Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8487657.1

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1497

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8487657.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 961 bp

cccacaacagaggttccttcaggcacagaacatagtgaaccctttggcatacatgtccattggagttttcctccttcacactactctcacttggttggtggtttatgttgtggactatggactaataggtgctgctcttacactgagtttttcttggtttttgcttgtgattacgtatgggatttacattttagtaagccccaactgcaaggaaacttggactggtttctcatggaaagccttttcgggactttggccttactttaagctaactcttgcttctgccatcatgttgtgtttggagatttggtacaatcaaggtttagtgcttatatcagggctcctagccaaccctacaatctcattggactccatttctatctgcatgaactacttgaactgggacatgcaatttatgctaggcctcgctgctgcagcaagcgttcgagtgagtaatgagctaggtgctggtcatccaaaggtggccaaattttctgtgtttgtagtgaatgggaccagcatcctgattagcatagtgttcagtgctattgtgctgatattcaaagtgggattgagcaagctatttacaagtgacgccgatgttattgaggcagtatctgaattgacccccttgctagccatctctgttttcttgaatggcattcaacctatactctcaggtgtggcaattggaagtggatggcaagctgttgtagcttatgtgaacctgacttgttattatattatcggtcttccaattgggtgtgttcttggcttcaaaactagtatgggagtagcaggtatttggtgggggatgattattggagtatctttacagacagcaactctaattgttctcactgccagaaccaactgggatgctgaggttgtgaacgcggctgagagattgaagagatctgcaagtgtagaacaattgctcttggaggaaaacggcgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

319

Amino Acids

34.68

Weight (kDa)

5.69

Isoelectric Point (pI)

19.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	789
AccII	CGCG	1 cut(s)	897
AciI	CCGC	1 cut(s)	897
AcoI	YGGCCR	1 cut(s)	484
AcsI	RAATTY	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	595
AfaI	GTAC	1 cut(s)	312
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	6 cut(s)	398, 563, 656, 666, 779, 911
AhlI	ACTAGT	1 cut(s)	783
AluBI	AGCT	5 cut(s)	269, 461, 581, 708, 717
AluI	AGCT	5 cut(s)	269, 461, 581, 708, 717
AlwNI	CAGNNNCTG	1 cut(s)	618
AoxI	GGCC	3 cut(s)	255, 422, 484
ApeKI	GCWGC	4 cut(s)	132, 429, 432, 435
ApoI	RAATTY	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	514
AsuNHI	GCTAGC	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	744
BbvCI	CCTCAGC	1 cut(s)	883
BbvI	GCAGC	4 cut(s)	119, 416, 419, 447
BccI	CCATC	3 cut(s)	294, 648, 694
BcuI	ACTAGT	1 cut(s)	783
BfaI	CTAG	5 cut(s)	345, 420, 462, 636, 784
BfmI	CTRYAG	1 cut(s)	433
BfuAI	ACCTGC	1 cut(s)	789
BglII	AGATCT	1 cut(s)	915
BisI	GCNGC	5 cut(s)	133, 430, 433, 436, 898
BlsI	GCNGC	5 cut(s)	134, 431, 434, 437, 899
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	3 cut(s)	15, 342, 515
BmrI	ACTGGG	2 cut(s)	410, 884
BmsI	GCATC	2 cut(s)	529, 869
BmtI	GCTAGC	1 cut(s)	639
BmuI	ACTGGG	2 cut(s)	410, 884
BpiI	GAAGAC	1 cut(s)	744
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
Bpu10I	CCTNAGC	1 cut(s)	883
BsaAI	YACGTR	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bse1I	ACTGG	3 cut(s)	227, 405, 879
BseGI	GGATG	5 cut(s)	473, 520, 705, 820, 884
BseMII	CTCAG	4 cut(s)	135, 691, 874, 892
BseNI	ACTGG	3 cut(s)	227, 405, 879
BseXI	GCAGC	4 cut(s)	119, 416, 419, 447
Bsh1236I	CGCG	1 cut(s)	897
BshFI	GGCC	3 cut(s)	257, 424, 486
BslFI	GGGAC	3 cut(s)	262, 417, 527
BsmFI	GGGAC	3 cut(s)	262, 417, 527
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	3 cut(s)	257, 424, 486
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	915
BspACI	CCGC	1 cut(s)	897
BspANI	GGCC	3 cut(s)	257, 424, 486
BspCNI	CTCAG	4 cut(s)	136, 690, 875, 893
BspFNI	CGCG	1 cut(s)	897
BspLI	GGNNCC	3 cut(s)	15, 342, 515
BspMAI	CTGCAG	1 cut(s)	437
BspMI	ACCTGC	1 cut(s)	789
BspOI	GCTAGC	1 cut(s)	639
BsrI	ACTGG	3 cut(s)	227, 405, 879
BssMI	GATC	1 cut(s)	915
BssNI	GRCGYC	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	906
BstACI	GRCGYC	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	4 cut(s)	440, 579, 637, 706
BstDEI	CTNAG	4 cut(s)	144, 677, 883, 901
BstF5I	GGATG	5 cut(s)	473, 520, 705, 820, 884
BstFNI	CGCG	1 cut(s)	897
BstKTI	GATC	1 cut(s)	918
BstMBI	GATC	1 cut(s)	915
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 416, 435, 714
BstNSI	RCATGY	2 cut(s)	56, 410
BstSFI	CTRYAG	1 cut(s)	433
BstSNI	TACGTA	1 cut(s)	175
BstUI	CGCG	1 cut(s)	897
BstV1I	GCAGC	4 cut(s)	119, 416, 419, 447
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	1 cut(s)	915
BstYI	RGATCY	1 cut(s)	915
BsuRI	GGCC	3 cut(s)	257, 424, 486
BtsCI	GGATG	5 cut(s)	473, 520, 705, 820, 884
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	3 cut(s)	141, 548, 859
BveI	ACCTGC	1 cut(s)	789
Cac8I	GCNNGC	4 cut(s)	440, 579, 637, 706
CaiI	CAGNNNCTG	1 cut(s)	618
Cfr13I	GGNCC	1 cut(s)	514
CseI	GACGC	1 cut(s)	603
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	5 cut(s)	53, 232, 290, 386, 407
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	4 cut(s)	144, 677, 883, 901
DpnI	GATC	1 cut(s)	917
DpnII	GATC	1 cut(s)	915
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
Eco105I	TACGTA	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	343
FaeI	CATG	5 cut(s)	56, 235, 293, 389, 410
FaqI	GGGAC	3 cut(s)	262, 417, 527
FatI	CATG	5 cut(s)	52, 231, 289, 385, 406
Fnu4HI	GCNGC	5 cut(s)	133, 430, 433, 436, 898
FokI	GGATG	5 cut(s)	460, 507, 712, 827, 891
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	5 cut(s)	133, 430, 433, 436, 898
FspBI	CTAG	5 cut(s)	345, 420, 462, 636, 784
GluI	GCNGC	5 cut(s)	133, 430, 433, 436, 898
HaeIII	GGCC	3 cut(s)	257, 424, 486
HgaI	GACGC	1 cut(s)	603
Hin1I	GRCGYC	1 cut(s)	595
Hin1II	CATG	5 cut(s)	56, 235, 293, 389, 410
HinfI	GANTC	1 cut(s)	369
Hpy166II	GTNNAC	4 cut(s)	38, 113, 725, 893
Hpy188I	TCNGA	1 cut(s)	620
Hpy188III	TCNNGA	3 cut(s)	247, 524, 653
Hpy8I	GTNNAC	4 cut(s)	38, 113, 725, 893
HpyAV	CCTTC	2 cut(s)	27, 84
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	5 cut(s)	208, 385, 410, 435, 921
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 416, 435, 714
HpyF3I	CTNAG	4 cut(s)	144, 677, 883, 901
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	595
Hsp92II	CATG	5 cut(s)	56, 235, 293, 389, 410
Kzo9I	GATC	1 cut(s)	915
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	4 cut(s)	119, 416, 419, 447
LweI	GCATC	2 cut(s)	529, 869
MaeI	CTAG	5 cut(s)	345, 420, 462, 636, 784
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	591
MalI	GATC	1 cut(s)	917
MboI	GATC	1 cut(s)	915
MboII	GAAGA	2 cut(s)	744, 923
MfeI	CAATTG	3 cut(s)	688, 757, 933
MflI	RGATCY	1 cut(s)	915
MhlI	GDGCHC	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	7 cut(s)	411, 489, 621, 688, 757, 850, 933
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	363
MnlI	CCTC	6 cut(s)	4, 81, 435, 602, 878, 938
Mox20I	TGGCCA	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	1 cut(s)	265
Msp20I	TGGCCA	1 cut(s)	486
MunI	CAATTG	3 cut(s)	688, 757, 933
Mva1269I	GAATGC	1 cut(s)	661
MvnI	CGCG	1 cut(s)	897
MwoI	GCNNNNNNNGC	4 cut(s)	205, 416, 435, 714
NdeII	GATC	1 cut(s)	915
NheI	GCTAGC	1 cut(s)	635
NlaIII	CATG	5 cut(s)	56, 235, 293, 389, 410
NlaIV	GGNNCC	3 cut(s)	15, 342, 515
NmuCI	GTSAC	1 cut(s)	591
NspI	RCATGY	2 cut(s)	56, 410
PceI	AGGCCT	1 cut(s)	424
PciI	ACATGT	1 cut(s)	52
PctI	GAATGC	1 cut(s)	661
PkrI	GCNGC	5 cut(s)	134, 431, 434, 437, 899
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	1 cut(s)	175
PscI	ACATGT	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	15, 342, 515
PspPI	GGNCC	1 cut(s)	514
PstI	CTGCAG	1 cut(s)	437
PstNI	CAGNNNCTG	1 cut(s)	618
PsuI	RGATCY	1 cut(s)	915
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	265
SatI	GCNGC	5 cut(s)	133, 430, 433, 436, 898
Sau3AI	GATC	1 cut(s)	915
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	2 cut(s)	529, 869
SfcI	CTRYAG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	514
SnaBI	TACGTA	1 cut(s)	175
SpeI	ACTAGT	1 cut(s)	783
Sse9I	AATT	7 cut(s)	411, 489, 621, 688, 757, 850, 933
SseBI	AGGCCT	1 cut(s)	424
SsiI	CCGC	1 cut(s)	897
SspMI	CTAG	5 cut(s)	345, 420, 462, 636, 784
StuI	AGGCCT	1 cut(s)	424
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	446
TaqII	GACCGA	1 cut(s)	738
TasI	AATT	7 cut(s)	411, 489, 621, 688, 757, 850, 933
TauI	GCSGC	1 cut(s)	900
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TscAI	CASTG	3 cut(s)	148, 548, 866
TseFI	GTSAC	1 cut(s)	591
TseI	GCWGC	4 cut(s)	132, 429, 432, 435
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	3 cut(s)	148, 548, 866
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	1 cut(s)	489
XceI	RCATGY	2 cut(s)	56, 410
XspI	CTAG	5 cut(s)	345, 420, 462, 636, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.