Prupe.3G180400_v2.0.a1

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
19631306 .. 19633924
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G180400.1

Sequence Viewer

Length: 1512 bp
ATGGGGTCGACGGGGGAGTACCAGCCTCTGCTGCTCGGACTTGACTCACATTCCCAGATACCTGGCTTGTCGTCCGCTGCCGTCGAAGATTTTCTGGAGCACCGGCCTGTGGCTGCCCGATGGTGGCCTAGACTGGTGGCATGGGAGTCAAGGCTCCTCTGGATTTTATCTGGTTCATCTATCATTGTCTCCATATTTAATTTTATGCTCAGCTTTGTCACCCTCATGTTTTGTGGCCATTTGAGTGCCTTGGAGCTGGCTGGAGCCTCTATTGCTAATGTGGGAATTCAAGGTCTTGCTTATGGGATTATGTTGGGAATGGCTAGTGCTGTGCAAACTGTGTGTGGGCAAGCATTTGGAGCCAGAAAATTGCGAGAAATGGGCATCATATGCCAAAGAGCAATCATCTTGCACTTGGGAGCAGCAGTCCTCCTTACATTTCTGTATTGGTGGTCAGGTCCAATACTTAGAGCCATAGGCCAGGCAGAAGACATAGCATTGGAGGGCCAAGTGTTTGCAAGGGGCCTAATTCCTCAACTTTATGCATTTGCAATAAACTGCCCCCAACAGAGGTTCCTTCAAGCACAAAACATTGTGAACCCTTTGGCCTATATGTCTTTTGGGGTTTTCCTCATCCACATTCTTCTCACTTGGTTGGTGGTTTATGTTGTGGAATATGGCCTACTGGGGGCTGCTCTTACTCTCAGCCTCTCTTGGTGGCTTCTTGTCATTACATATGGACTTTACATTATTCTAAGCCCCAAGTGCAAGGAAACTTGGACTGGCTTCTCTTGGAATGCCTTCAAAGGAATTTGGCCTTATTTTAAGTTGACTCTTTCCTCTGCTGTCATGCTCTGCTTGGAGATATGGTACAGCCAGGGGCTGGTGCTGATATCTGGGCTTCTCTCCAATCCTACAGTTGCTCTAGACTCCATTTCTATTTGCATGAACTACTTGAACTGGGACTTGCAATTTATGTTAGGCCTAAGTGCAGGAGCCAGTGTTCGAGTCAGTAATGAGCTAGGTGCTGGTAATGCAAAGGTGACCAAATTTTCTGTGTTTGTTGTGAACGGGACCAGCATACTGATTAGCATAGTCTTCAGTGCAATTGTATTGATTTTTAAAGTTGGATTAAGCAAGCTTTTTACGAGTGATTCCGTAGTTATCGCAGCAGTATCTGATTTAACCCCATTGCTGGCCATCTCTGTTTTCTTGAATGGCATTCAACCTATACTCTCAGGGGTGGCAATTGGAAGTGGATGGCAAGCTATTGTGGCCTATGTTAACCTGACTTGCTACTACGTTATCGGTCTTCCGATCGGATGTGTTCTTGGCTTCAAAACCAACATGGGAGTATCAGGGATTTGGTGGGGGATGATTATTGGAGTTTTTCTACAAACAGTAACTCTAATTATTCTCACCGCCAGAACAAATTGGGATGCTGAGGTCGAAAAAGCAGCTGAGCGATTGAAGAAAGCTGCAGAAATACAAGACTCGCTGACCGATGTATAA

Protein Analysis

504

Amino Acids

54.73

Weight (kDa)

6.94

Isoelectric Point (pI)

22.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 883
AccI GTMKAC 1 cut(s) 8
AciI CCGC 2 cut(s) 75, 1422
AcoI YGGCCR 2 cut(s) 235, 1197
AcsI RAATTY 3 cut(s) 285, 810, 1049
AcuI CTGAAG 1 cut(s) 1084
AfaI GTAC 2 cut(s) 20, 872
AfiI CCNNNNNNNGG 6 cut(s) 109, 123, 570, 688, 883, 1195
AgsI TTSAA 8 cut(s) 290, 581, 805, 958, 1216, 1226, 1339, 1471
AjnI CCWGG 3 cut(s) 61, 480, 876
AloI GAACNNNNNNTCC 2 cut(s) 987, 1019
AluBI AGCT 7 cut(s) 213, 256, 1021, 1141, 1268, 1460, 1478
AluI AGCT 7 cut(s) 213, 256, 1021, 1141, 1268, 1460, 1478
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 193
AlwNI CAGNNNCTG 3 cut(s) 28, 883, 1178
ApeKI GCWGC 8 cut(s) 31, 77, 113, 422, 692, 1169, 1457, 1478
ApoI RAATTY 3 cut(s) 285, 810, 1049
Asp700I GAANNNNTTC 2 cut(s) 90, 800
AspS9I GGNCC 4 cut(s) 458, 505, 523, 1074
AsuHPI GGTGA 3 cut(s) 211, 1054, 1411
AvaII GGWCC 2 cut(s) 458, 1074
BalI TGGCCA 2 cut(s) 237, 1199
BbsI GAAGAC 3 cut(s) 495, 1090, 1304
Bbv12I GWGCWC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 1443
BbvI GCAGC 8 cut(s) 18, 64, 100, 434, 679, 1181, 1465, 1469
BccI CCATC 3 cut(s) 114, 1208, 1254
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 3 cut(s) 63, 482, 878
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 4 cut(s) 129, 324, 926, 1022
BfmI CTRYAG 2 cut(s) 915, 1479
BisI GCNGC 8 cut(s) 32, 78, 114, 423, 693, 1170, 1458, 1479
BlpI GCTNAGC 2 cut(s) 209, 1461
BlsI GCNGC 8 cut(s) 33, 79, 115, 424, 694, 1171, 1459, 1480
Bme1390I CCNGG 3 cut(s) 63, 482, 878
Bme18I GGWCC 2 cut(s) 458, 1074
BmgT120I GGNCC 4 cut(s) 458, 505, 523, 1074
BmiI GGNNCC 7 cut(s) 155, 265, 361, 524, 575, 997, 1075
BmrFI CCNGG 3 cut(s) 63, 482, 878
BmrI ACTGGG 2 cut(s) 695, 970
BmsI GCATC 2 cut(s) 393, 1429
BmuI ACTGGG 2 cut(s) 695, 970
BpiI GAAGAC 3 cut(s) 495, 1090, 1304
BpmI CTGGAG 2 cut(s) 116, 282
Bpu10I CCTNAGC 1 cut(s) 1443
Bpu1102I GCTNAGC 2 cut(s) 209, 1461
BsaJI CCNNGG 2 cut(s) 249, 877
BsaXI ACNNNNNCTCC 6 cut(s) 411, 441, 854, 884, 987, 1017
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 123, 570, 688, 883, 1195
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 5 cut(s) 138, 690, 787, 965, 999
Bse3DI GCAATG 1 cut(s) 1190
BseBI CCWGG 3 cut(s) 63, 482, 878
BseDI CCNNGG 2 cut(s) 249, 877
BseGI GGATG 5 cut(s) 633, 1265, 1328, 1380, 1444
BseLI CCNNNNNNNGG 6 cut(s) 109, 123, 570, 688, 883, 1195
BseMI GCAATG 1 cut(s) 1190
BseMII CTCAG 5 cut(s) 223, 718, 1251, 1434, 1452
BseNI ACTGG 5 cut(s) 138, 690, 787, 965, 999
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 8 cut(s) 18, 64, 100, 434, 679, 1181, 1465, 1469
BsgI GTGCAG 1 cut(s) 1011
Bsh1285I CGRYCG 1 cut(s) 1320
BsiEI CGRYCG 1 cut(s) 1320
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 2 cut(s) 977, 1087
BslI CCNNNNNNNGG 6 cut(s) 109, 123, 570, 688, 883, 1195
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 2 cut(s) 977, 1087
BsmI GAATGC 2 cut(s) 802, 1221
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 1317
Bsp1720I GCTNAGC 2 cut(s) 209, 1461
BspACI CCGC 2 cut(s) 75, 1422
BspCNI CTCAG 5 cut(s) 222, 717, 1250, 1435, 1453
BspLI GGNNCC 7 cut(s) 155, 265, 361, 524, 575, 997, 1075
BspMAI CTGCAG 1 cut(s) 1483
BsrDI GCAATG 1 cut(s) 1190
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 5 cut(s) 138, 690, 787, 965, 999
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 249, 877
BssMI GATC 1 cut(s) 1317
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 3 cut(s) 63, 482, 878
Bst4CI ACNGT 3 cut(s) 340, 919, 1402
BstAPI GCANNNNNTGC 1 cut(s) 390
BstC8I GCNNGC 5 cut(s) 258, 351, 1139, 1197, 1266
BstDEI CTNAG 8 cut(s) 209, 467, 704, 755, 986, 1237, 1443, 1461
BstEII GGTNACC 1 cut(s) 1042
BstF5I GGATG 5 cut(s) 633, 1265, 1328, 1380, 1444
BstKTI GATC 1 cut(s) 1320
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 1317
BstMCI CGRYCG 1 cut(s) 1320
BstMWI GCNNNNNNNGC 7 cut(s) 31, 272, 359, 390, 765, 1034, 1274
BstNI CCWGG 3 cut(s) 63, 482, 878
BstPI GGTNACC 1 cut(s) 1042
BstSCI CCNGG 3 cut(s) 61, 480, 876
BstSFI CTRYAG 2 cut(s) 915, 1479
BstV1I GCAGC 8 cut(s) 18, 64, 100, 434, 679, 1181, 1465, 1469
BstV2I GAAGAC 3 cut(s) 495, 1090, 1304
BstXI CCANNNNNNTGG 1 cut(s) 62
BtsCI GGATG 5 cut(s) 633, 1265, 1328, 1380, 1444
BtsIMutI CAGTG 2 cut(s) 1006, 1108
Cac8I GCNNGC 5 cut(s) 258, 351, 1139, 1197, 1266
CaiI CAGNNNCTG 3 cut(s) 28, 883, 1178
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 4 cut(s) 458, 505, 523, 1074
Csp6I GTAC 2 cut(s) 19, 871
CviAII CATG 5 cut(s) 141, 226, 850, 946, 1348
CviQI GTAC 2 cut(s) 19, 871
DdeI CTNAG 8 cut(s) 209, 467, 704, 755, 986, 1237, 1443, 1461
DpnI GATC 1 cut(s) 1319
DpnII GATC 1 cut(s) 1317
DraI TTTAAA 1 cut(s) 1123
EaeI YGGCCR 2 cut(s) 235, 1197
Eco130I CCWWGG 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 984
Eco32I GATATC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 458, 1074
Eco57I CTGAAG 1 cut(s) 1084
Eco91I GGTNACC 1 cut(s) 1042
EcoO109I RGGNCCY 1 cut(s) 523
EcoO65I GGTNACC 1 cut(s) 1042
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 3 cut(s) 61, 480, 876
EcoRV GATATC 1 cut(s) 894
EcoT14I CCWWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 5 cut(s) 144, 229, 853, 949, 1351
FaqI GGGAC 2 cut(s) 977, 1087
FatI CATG 5 cut(s) 140, 225, 849, 945, 1347
FauNDI CATATG 2 cut(s) 389, 736
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 8 cut(s) 32, 78, 114, 423, 693, 1170, 1458, 1479
FokI GGATG 5 cut(s) 620, 1272, 1335, 1387, 1451
Fsp4HI GCNGC 8 cut(s) 32, 78, 114, 423, 693, 1170, 1458, 1479
FspBI CTAG 4 cut(s) 129, 324, 926, 1022
GluI GCNGC 8 cut(s) 32, 78, 114, 423, 693, 1170, 1458, 1479
GsuI CTGGAG 2 cut(s) 116, 282
HapII CCGG 1 cut(s) 103
Hin1II CATG 5 cut(s) 144, 229, 853, 949, 1351
HincII GTYRAC 3 cut(s) 9, 831, 1285
HindII GTYRAC 3 cut(s) 9, 831, 1285
HindIII AAGCTT 1 cut(s) 1139
HinfI GANTC 7 cut(s) 44, 146, 832, 929, 1008, 1154, 1493
HpaI GTTAAC 1 cut(s) 1285
HpaII CCGG 1 cut(s) 103
HphI GGTGA 3 cut(s) 211, 1054, 1411
Hpy166II GTNNAC 5 cut(s) 9, 598, 831, 1069, 1285
Hpy188I TCNGA 4 cut(s) 38, 1180, 1317, 1322
Hpy188III TCNNGA 4 cut(s) 95, 160, 926, 1213
Hpy8I GTNNAC 5 cut(s) 9, 598, 831, 1069, 1285
Hpy99I CGWCG 2 cut(s) 13, 86
HpyAV CCTTC 2 cut(s) 587, 811
HpyCH4III ACNGT 3 cut(s) 340, 919, 1402
HpyCH4IV ACGT 1 cut(s) 1302
HpyF10VI GCNNNNNNNGC 7 cut(s) 31, 272, 359, 390, 765, 1034, 1274
HpyF3I CTNAG 8 cut(s) 209, 467, 704, 755, 986, 1237, 1443, 1461
HpySE526I ACGT 1 cut(s) 1302
Hsp92II CATG 5 cut(s) 144, 229, 853, 949, 1351
KspAI GTTAAC 1 cut(s) 1285
Kzo9I GATC 1 cut(s) 1317
LmnI GCTCC 7 cut(s) 97, 159, 253, 263, 359, 419, 995
Lsp1109I GCAGC 8 cut(s) 18, 64, 100, 434, 679, 1181, 1465, 1469
LweI GCATC 2 cut(s) 393, 1429
MaeI CTAG 4 cut(s) 129, 324, 926, 1022
MaeII ACGT 1 cut(s) 1302
MaeIII GTNAC 3 cut(s) 217, 1042, 1402
MalI GATC 1 cut(s) 1319
MboI GATC 1 cut(s) 1317
MboII GAAGA 6 cut(s) 98, 500, 635, 1090, 1304, 1483
MfeI CAATTG 2 cut(s) 1107, 1248
MhlI GDGCHC 1 cut(s) 102
MlsI TGGCCA 2 cut(s) 237, 1199
MluNI TGGCCA 2 cut(s) 237, 1199
MlyI GAGTC 6 cut(s) 38, 155, 826, 923, 1017, 1487
MmeI TCCRAC 1 cut(s) 1108
Mox20I TGGCCA 2 cut(s) 237, 1199
Mph1103I ATGCAT 1 cut(s) 547
MroXI GAANNNNTTC 2 cut(s) 90, 800
MscI TGGCCA 2 cut(s) 237, 1199
MseI TTAA 6 cut(s) 198, 825, 1122, 1133, 1184, 1284
MslI CAYNNNNRTG 2 cut(s) 224, 243
Msp20I TGGCCA 2 cut(s) 237, 1199
MspA1I CMGCKG 2 cut(s) 77, 1460
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 3 cut(s) 63, 482, 878
MunI CAATTG 2 cut(s) 1107, 1248
Mva1269I GAATGC 2 cut(s) 802, 1221
MvaI CCWGG 3 cut(s) 63, 482, 878
MwoI GCNNNNNNNGC 7 cut(s) 31, 272, 359, 390, 765, 1034, 1274
NdeI CATATG 2 cut(s) 389, 736
NdeII GATC 1 cut(s) 1317
NlaIII CATG 5 cut(s) 144, 229, 853, 949, 1351
NlaIV GGNNCC 7 cut(s) 155, 265, 361, 524, 575, 997, 1075
NmuCI GTSAC 2 cut(s) 217, 1042
NsiI ATGCAT 1 cut(s) 547
PceI AGGCCT 1 cut(s) 984
PctI GAATGC 2 cut(s) 802, 1221
PdmI GAANNNNTTC 2 cut(s) 90, 800
PfeI GAWTC 1 cut(s) 1154
PflMI CCANNNNNTGG 1 cut(s) 883
PkrI GCNGC 8 cut(s) 33, 79, 115, 424, 694, 1171, 1459, 1480
Ple19I CGATCG 1 cut(s) 1320
PleI GAGTC 6 cut(s) 38, 154, 826, 923, 1016, 1487
PpsI GAGTC 6 cut(s) 38, 154, 826, 923, 1016, 1487
Psp6I CCWGG 3 cut(s) 61, 480, 876
PspEI GGTNACC 1 cut(s) 1042
PspGI CCWGG 3 cut(s) 61, 480, 876
PspN4I GGNNCC 7 cut(s) 155, 265, 361, 524, 575, 997, 1075
PspPI GGNCC 4 cut(s) 458, 505, 523, 1074
PstI CTGCAG 1 cut(s) 1483
PstNI CAGNNNCTG 3 cut(s) 28, 883, 1178
PvuI CGATCG 1 cut(s) 1320
PvuII CAGCTG 1 cut(s) 1460
RsaI GTAC 2 cut(s) 20, 872
RsaNI GTAC 2 cut(s) 19, 871
RseI CAYNNNNRTG 2 cut(s) 224, 243
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 6 cut(s) 198, 825, 1122, 1133, 1184, 1284
SatI GCNGC 8 cut(s) 32, 78, 114, 423, 693, 1170, 1458, 1479
Sau3AI GATC 1 cut(s) 1317
Sau96I GGNCC 4 cut(s) 458, 505, 523, 1074
SchI GAGTC 6 cut(s) 38, 155, 826, 923, 1017, 1487
ScrFI CCNGG 3 cut(s) 63, 482, 878
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 2 cut(s) 393, 1429
SfcI CTRYAG 2 cut(s) 915, 1479
SinI GGWCC 2 cut(s) 458, 1074
SmiMI CAYNNNNRTG 2 cut(s) 224, 243
SseBI AGGCCT 1 cut(s) 984
SsiI CCGC 2 cut(s) 75, 1422
SspMI CTAG 4 cut(s) 129, 324, 926, 1022
StuI AGGCCT 1 cut(s) 984
StyD4I CCNGG 3 cut(s) 61, 480, 876
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 3 cut(s) 340, 919, 1402
TaiI ACGT 1 cut(s) 1305
TaqI TCGA 4 cut(s) 8, 84, 1006, 1449
TaqII GACCGA 1 cut(s) 1298
TfiI GAWTC 1 cut(s) 1154
Tru1I TTAA 6 cut(s) 198, 825, 1122, 1133, 1184, 1284
Tru9I TTAA 6 cut(s) 198, 825, 1122, 1133, 1184, 1284
TscAI CASTG 2 cut(s) 1006, 1108
TseFI GTSAC 2 cut(s) 217, 1042
TseI GCWGC 8 cut(s) 31, 77, 113, 422, 692, 1169, 1457, 1478
Tsp45I GTSAC 2 cut(s) 217, 1042
TspDTI ATGAA 2 cut(s) 165, 962
TspGWI ACGGA 1 cut(s) 1147
TspRI CASTG 2 cut(s) 1006, 1108
Van91I CCANNNNNTGG 1 cut(s) 883
VpaK11BI GGWCC 2 cut(s) 458, 1074
XapI RAATTY 3 cut(s) 285, 810, 1049
XbaI TCTAGA 1 cut(s) 925
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 2 cut(s) 90, 800
XspI CTAG 4 cut(s) 129, 324, 926, 1022
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.