Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Forward (+)

54427511 .. 54427984

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0423200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTCGACGACGTTTATGCACGCCTTGCTGCTGCTCTTGCTATCTCCGATAAGGGTCGAGTGTCATTTGGGGAGGCCGGAAAGTCGGCCATATCATCCCACCACTATGCTGTTGGCCATCTTTTGGGTATGAAGAGGGTTGATCCAAAGGCTTTCATGGGAACCATGTCCACTGTATGGGGTCTCAAACAACGCTTGTCTATCAAGGAGCATGGCAACCGCTTTGTCCTGCGTTTTACTATGATGGAAGAGAAAAACAAGATCGTCTCTGACGGCTCGTGGTTTTTTGGCAAAGCGATGTTTGCTATGTCAGACTATGATGGGCTGGGGGATGCTCTCCAGGTTCCCATTCTTTCGTTCCCTACCTGGGCAGAGATTCTTGGACTTCCGCCGGCCTTAATGACTGAGAAGGCGGTGGCTATGGTGGGTGCGACGCTGGGGAAAATTATGCAGCTGGATAAGACGAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

157

Amino Acids

17.2

Weight (kDa)

9.4

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	54 - 105	4e-08	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	124, 177
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	3 cut(s)	220, 389, 413
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	2 cut(s)	87, 115
AfiI	CCNNNNNNNGG	3 cut(s)	124, 177, 367
AjnI	CCWGG	2 cut(s)	339, 365
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
Alw26I	GTCTC	2 cut(s)	188, 271
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	4 cut(s)	75, 87, 115, 393
ApeKI	GCWGC	3 cut(s)	29, 32, 451
BalI	TGGCCA	1 cut(s)	117
BauI	CACGAG	1 cut(s)	277
BbvI	GCAGC	3 cut(s)	16, 19, 463
BccI	CCATC	3 cut(s)	126, 238, 314
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	341, 367
BcoDI	GTCTC	2 cut(s)	188, 271
BisI	GCNGC	3 cut(s)	30, 33, 452
BlsI	GCNGC	3 cut(s)	31, 34, 453
Bme1390I	CCNGG	2 cut(s)	341, 367
BmiI	GGNNCC	2 cut(s)	163, 345
BmrFI	CCNGG	2 cut(s)	341, 367
BmsI	GCATC	1 cut(s)	322
BpmI	CTGGAG	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 177, 367
Bse118I	RCCGGY	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	341, 367
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	95, 337
BseLI	CCNNNNNNNGG	3 cut(s)	124, 177, 367
BseMII	CTCAG	1 cut(s)	396
BseXI	GCAGC	3 cut(s)	16, 19, 463
BseYI	CCCAGC	2 cut(s)	325, 436
BshFI	GGCC	4 cut(s)	77, 89, 117, 395
BsiSI	CCGG	2 cut(s)	78, 392
BslI	CCNNNNNNNGG	3 cut(s)	124, 177, 367
BsmAI	GTCTC	2 cut(s)	188, 271
BsmBI	CGTCTC	1 cut(s)	271
BsnI	GGCC	4 cut(s)	77, 89, 117, 395
Bso31I	GGTCTC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	142, 261, 468
BspACI	CCGC	3 cut(s)	220, 389, 413
BspANI	GGCC	4 cut(s)	77, 89, 117, 395
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	163, 345
BspPI	GGATC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	142, 261, 468
BssSI	CACGAG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	341, 367
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	2 cut(s)	128, 243
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	22, 393
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	2 cut(s)	95, 337
BstKTI	GATC	3 cut(s)	145, 264, 471
BstMAI	GTCTC	2 cut(s)	188, 271
BstMBI	GATC	3 cut(s)	142, 261, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 38, 302
BstNI	CCWGG	2 cut(s)	341, 367
BstSCI	CCNGG	2 cut(s)	339, 365
BstV1I	GCAGC	3 cut(s)	16, 19, 463
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	77, 89, 117, 395
BtgZI	GCGATG	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	95, 337
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	22, 393
Cfr10I	RCCGGY	1 cut(s)	391
CseI	GACGC	1 cut(s)	442
CviAII	CATG	3 cut(s)	157, 166, 212
CviJI	RGCY	9 cut(s)	77, 89, 117, 152, 276, 325, 395, 419, 454
CviKI_1	RGCY	9 cut(s)	77, 89, 117, 152, 276, 325, 395, 419, 454
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	3 cut(s)	144, 263, 470
DpnII	GATC	3 cut(s)	142, 261, 468
EaeI	YGGCCR	2 cut(s)	87, 115
Eam1104I	CTCTTC	2 cut(s)	128, 243
EarI	CTCTTC	2 cut(s)	128, 243
EciI	GGCGGA	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	339, 365
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	3 cut(s)	160, 169, 215
FatI	CATG	3 cut(s)	156, 165, 211
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	30, 33, 452
FokI	GGATG	2 cut(s)	82, 344
Fsp4HI	GCNGC	3 cut(s)	30, 33, 452
GluI	GCNGC	3 cut(s)	30, 33, 452
GsaI	CCCAGC	2 cut(s)	329, 440
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	4 cut(s)	77, 89, 117, 395
HapII	CCGG	2 cut(s)	78, 392
HgaI	GACGC	1 cut(s)	442
Hin1II	CATG	3 cut(s)	160, 169, 215
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	2 cut(s)	78, 392
Hpy166II	GTNNAC	2 cut(s)	7, 171
Hpy188I	TCNGA	4 cut(s)	49, 271, 313, 473
Hpy8I	GTNNAC	2 cut(s)	7, 171
Hpy99I	CGWCG	3 cut(s)	11, 14, 436
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	20, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 38, 302
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	160, 169, 215
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	142, 261, 468
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	3 cut(s)	16, 19, 463
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	1 cut(s)	12
MalI	GATC	3 cut(s)	144, 263, 470
MboI	GATC	3 cut(s)	142, 261, 468
MboII	GAAGA	2 cut(s)	145, 260
MflI	RGATCY	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	1 cut(s)	444
MluNI	TGGCCA	1 cut(s)	117
MnlI	CCTC	3 cut(s)	67, 129, 459
Mox20I	TGGCCA	1 cut(s)	117
MroNI	GCCGGC	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	2 cut(s)	78, 392
MspR9I	CCNGG	2 cut(s)	341, 367
MvaI	CCWGG	2 cut(s)	341, 367
MwoI	GCNNNNNNNGC	3 cut(s)	26, 38, 302
NaeI	GCCGGC	1 cut(s)	393
NdeII	GATC	3 cut(s)	142, 261, 468
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	3 cut(s)	160, 169, 215
NlaIV	GGNNCC	2 cut(s)	163, 345
PdiI	GCCGGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	376
PflMI	CCANNNNNTGG	2 cut(s)	124, 177
PkrI	GCNGC	3 cut(s)	31, 34, 453
Psp6I	CCWGG	2 cut(s)	339, 365
PspFI	CCCAGC	2 cut(s)	325, 436
PspGI	CCWGG	2 cut(s)	339, 365
PspN4I	GGNNCC	2 cut(s)	163, 345
PsuI	RGATCY	1 cut(s)	468
PvuII	CAGCTG	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	105
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	3 cut(s)	30, 33, 452
Sau3AI	GATC	3 cut(s)	142, 261, 468
ScrFI	CCNGG	2 cut(s)	341, 367
SetI	ASST	4 cut(s)	15, 345, 368, 456
SfaNI	GCATC	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	444
SsiI	CCGC	3 cut(s)	220, 389, 413
StyD4I	CCNGG	2 cut(s)	339, 365
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	6, 58
TasI	AATT	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	3 cut(s)	29, 32, 451
TspDTI	ATGAA	2 cut(s)	145, 146
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	2 cut(s)	124, 177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.