RLG00000020647

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
67108041 .. 67110363
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020647

Sequence Viewer

Length: 1518 bp
ATGGGGTCGGAGCAGTACCAGCCGCTACTCCTCGGACCTGACTCATATTCCCGGATTCCTGACTTGTCATCCGCTGAGATTGAAGAATTTTTGGAGCGAAGGCCTATAGCACTAAGGTGGTGGCCTAGGCTAGTGGCATGGGAGTCGAGGCTGCTATGGATTTTATCTGGTTCATCTATCGTGGTTTCGCTTTTCAATTACATGCTCAGCTTTGTCACATTGATGTTTTGTGGCCATCTGAGTGCATTGGAGCTTGCTGGAGCCTCTATTGCAAGTGTGGGAATCCAAGGTCTTGCTTATGGGATTATGCTGGGCATGGCGAGTGCTGTACAAACTGTTTGTGGGCAAGCCTATGGAGCCAAACACTACGGAGCATTGGGGATAATATGCCAAAGAGCAATCGTCTTGCACTTGGGAGCAGCAATCCTGCTTACATTTTTGTACTGGTGGTCAGGTCCATTACTCGTAGCCATGGGACAATCAGAAAGTATAGCAGAACAGGGTCAGATCTTTGCGCGCGGCTTAATCCCTCAACTCTATGCATTTGCCATAAACTGCCCACAACAGAGGTTCCTTCAGGCACAGAACATAGTGAACCCTTTGGCATACATGTCCATTGGAGTTTTCCTCCTTCACACTACTCTCACTTGGTTGGTGGTTTATGTTGTGGACTATGGACTAATAGGTGCTGCTCTTACACTGAGTTTTTCTTGGTTTTTGCTTGTGATTACGTATGGGATTTACATTTTAGTAAGCCCCAACTGCAAGGAAACTTGGACTGGTTTCTCATGGAAAGCCTTTTCGGGAATTTGGCCTTATTTTAAGCTAACTCTTGCTTCTGCCATCATGTTGTGTTTGGAGATTTGGTACAATCAAGGTTTAGTGCTTATATCAGGGCTCCTAGCCAACCCTACAATCTCATTGGACTCCATTTCTATCTGCATGAACTACTTGAACTGGGACATGCAATTTATGCTAGGCCTCGCTGCTGCAGCAAGCGTTCGAGTGAGTAATGAGCTAGGTGCTGGTCATCCAAAGGTGGCCAAATTTTCTGTGTTTGTAGTGAATGGGACCAGCATCCTGATTAGCATGGTGTTCAGTGCTATTGTGCTGACATTCAAAGTGGGATTGAGCAAGCTATTTACAAGTGACGCCGATGTTATTGAGGCAGTATCTGAATTGACCCCCTTGCTAGCCATCTCTGTTTTCTTGAATGGCATTCAACCTATACTCTCAGGTGTGGCAATTGGAAGTGGATGGCAAGCTGTTGTAGCTTATGTGAACCTGACTTGTTATTATATTATCGGTCTTCCAATTGGGTGTGTTCTTGGCTTCAAAACTAGTATGGGAGTAGCAGGTATTTGGTGGGGGATGATTATCGGAGTATTTTTACAGACAGCAACTCTAATTGTTCTCACTGCCAGAACCAACTGGGATGCTGAGGTTGTGAACGCGGCTGAGAGATTGAAAAGATCTGCAAGCGTAGAACAATTGCTCTTGGAGGAAAACGGTGTATGA

Protein Analysis

506

Amino Acids

55.03

Weight (kDa)

5.78

Isoelectric Point (pI)

27.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 59 - 218 8.8e-29 MatE
MatE PF01554 280 - 440 3.4e-25 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1346
AccII CGCG 3 cut(s) 517, 519, 1454
AciI CCGC 4 cut(s) 23, 72, 519, 1454
AcoI YGGCCR 2 cut(s) 232, 1041
AcsI RAATTY 3 cut(s) 86, 807, 1046
AcuI CTGAAG 1 cut(s) 560
AcyI GRCGYC 1 cut(s) 1152
AfaI GTAC 4 cut(s) 17, 330, 443, 869
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 8 cut(s) 83, 196, 955, 1120, 1213, 1223, 1336, 1468
AhlI ACTAGT 1 cut(s) 1340
AleI CACNNNNGTG 1 cut(s) 115
AluBI AGCT 7 cut(s) 210, 253, 826, 1018, 1138, 1265, 1274
AluI AGCT 7 cut(s) 210, 253, 826, 1018, 1138, 1265, 1274
AlwNI CAGNNNCTG 1 cut(s) 1175
AoxI GGCC 6 cut(s) 101, 122, 232, 812, 979, 1041
ApeKI GCWGC 6 cut(s) 151, 419, 689, 986, 989, 992
ApoI RAATTY 3 cut(s) 86, 807, 1046
AspA2I CCTAGG 1 cut(s) 125
AspLEI GCGC 2 cut(s) 517, 519
AspS9I GGNCC 3 cut(s) 35, 455, 1071
AsuC2I CCSGG 1 cut(s) 52
AsuNHI GCTAGC 1 cut(s) 1192
AvaII GGWCC 3 cut(s) 35, 455, 1071
AvrII CCTAGG 1 cut(s) 125
BalI TGGCCA 2 cut(s) 234, 1043
BanII GRGCYC 1 cut(s) 900
BbsI GAAGAC 1 cut(s) 1301
BbvCI CCTCAGC 1 cut(s) 1440
BbvI GCAGC 6 cut(s) 138, 431, 676, 973, 976, 1004
BccI CCATC 4 cut(s) 243, 851, 1205, 1251
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BcnI CCSGG 1 cut(s) 52
BcuI ACTAGT 1 cut(s) 1340
BfaI CTAG 7 cut(s) 126, 131, 902, 977, 1019, 1193, 1341
BfmI CTRYAG 2 cut(s) 105, 990
BfuAI ACCTGC 1 cut(s) 1346
BglII AGATCT 2 cut(s) 507, 1472
BisI GCNGC 9 cut(s) 23, 152, 420, 520, 690, 987, 990, 993, 1455
BlnI CCTAGG 1 cut(s) 125
BlpI GCTNAGC 1 cut(s) 206
BlsI GCNGC 9 cut(s) 24, 153, 421, 521, 691, 988, 991, 994, 1456
Bme1390I CCNGG 1 cut(s) 52
Bme18I GGWCC 3 cut(s) 35, 455, 1071
BmgT120I GGNCC 3 cut(s) 35, 455, 1071
BmiI GGNNCC 5 cut(s) 262, 358, 572, 899, 1072
BmrFI CCNGG 1 cut(s) 52
BmrI ACTGGG 2 cut(s) 967, 1441
BmsI GCATC 2 cut(s) 1086, 1426
BmtI GCTAGC 1 cut(s) 1196
BmuI ACTGGG 2 cut(s) 967, 1441
BpiI GAAGAC 1 cut(s) 1301
BplI GAGNNNNNCTC 2 cut(s) 612, 644
BpmI CTGGAG 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 1440
Bpu1102I GCTNAGC 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 52
BsaAI YACGTR 1 cut(s) 732
BsaBI GATNNNNATC 1 cut(s) 1376
BsaHI GRCGYC 1 cut(s) 1152
BsaJI CCNNGG 4 cut(s) 31, 125, 286, 471
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bse1I ACTGG 4 cut(s) 449, 784, 962, 1436
Bse8I GATNNNNATC 1 cut(s) 1376
BseDI CCNNGG 4 cut(s) 31, 125, 286, 471
BseGI GGATG 6 cut(s) 68, 1030, 1077, 1262, 1377, 1441
BseJI GATNNNNATC 1 cut(s) 1376
BseMII CTCAG 7 cut(s) 66, 220, 230, 692, 1248, 1431, 1449
BseNI ACTGG 4 cut(s) 449, 784, 962, 1436
BsePI GCGCGC 1 cut(s) 515
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 6 cut(s) 138, 431, 676, 973, 976, 1004
BseYI CCCAGC 1 cut(s) 310
Bsh1236I CGCG 3 cut(s) 517, 519, 1454
BshFI GGCC 6 cut(s) 103, 124, 234, 814, 981, 1043
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 3 cut(s) 489, 974, 1084
BsmFI GGGAC 3 cut(s) 489, 974, 1084
BsmI GAATGC 1 cut(s) 1218
BsnI GGCC 6 cut(s) 103, 124, 234, 814, 981, 1043
Bsp1286I GDGCHC 1 cut(s) 900
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 2 cut(s) 507, 1472
Bsp1720I GCTNAGC 1 cut(s) 206
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 4 cut(s) 23, 72, 519, 1454
BspANI GGCC 6 cut(s) 103, 124, 234, 814, 981, 1043
BspCNI CTCAG 7 cut(s) 67, 219, 231, 693, 1247, 1432, 1450
BspFNI CGCG 3 cut(s) 517, 519, 1454
BspLI GGNNCC 5 cut(s) 262, 358, 572, 899, 1072
BspMAI CTGCAG 1 cut(s) 994
BspMI ACCTGC 1 cut(s) 1346
BspOI GCTAGC 1 cut(s) 1196
BsrGI TGTACA 1 cut(s) 328
BsrI ACTGG 4 cut(s) 449, 784, 962, 1436
BssECI CCNNGG 4 cut(s) 31, 125, 286, 471
BssHII GCGCGC 1 cut(s) 515
BssMI GATC 2 cut(s) 507, 1472
BssNI GRCGYC 1 cut(s) 1152
BssT1I CCWWGG 3 cut(s) 125, 286, 471
Bst4CI ACNGT 2 cut(s) 337, 1511
BstACI GRCGYC 1 cut(s) 1152
BstAPI GCANNNNNTGC 1 cut(s) 973
BstAUI TGTACA 1 cut(s) 328
BstBAI YACGTR 1 cut(s) 732
BstC8I GCNNGC 8 cut(s) 255, 348, 517, 997, 1136, 1194, 1263, 1480
BstDEI CTNAG 8 cut(s) 75, 113, 206, 239, 701, 1234, 1440, 1458
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 6 cut(s) 68, 1030, 1077, 1262, 1377, 1441
BstFNI CGCG 3 cut(s) 517, 519, 1454
BstHHI GCGC 2 cut(s) 517, 519
BstKTI GATC 2 cut(s) 510, 1475
BstMBI GATC 2 cut(s) 507, 1472
BstMWI GCNNNNNNNGC 7 cut(s) 19, 269, 356, 762, 973, 992, 1271
BstNSI RCATGY 3 cut(s) 205, 613, 967
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 2 cut(s) 105, 990
BstSNI TACGTA 1 cut(s) 732
BstUI CGCG 3 cut(s) 517, 519, 1454
BstV1I GCAGC 6 cut(s) 138, 431, 676, 973, 976, 1004
BstV2I GAAGAC 1 cut(s) 1301
BstX2I RGATCY 2 cut(s) 507, 1472
BstYI RGATCY 2 cut(s) 507, 1472
BsuRI GGCC 6 cut(s) 103, 124, 234, 814, 981, 1043
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 6 cut(s) 68, 1030, 1077, 1262, 1377, 1441
BtsI GCAGTG 1 cut(s) 1416
BtsIMutI CAGTG 3 cut(s) 698, 1105, 1416
BveI ACCTGC 1 cut(s) 1346
Cac8I GCNNGC 8 cut(s) 255, 348, 517, 997, 1136, 1194, 1263, 1480
CaiI CAGNNNCTG 1 cut(s) 1175
CfoI GCGC 2 cut(s) 517, 519
Cfr13I GGNCC 3 cut(s) 35, 455, 1071
CseI GACGC 1 cut(s) 1160
Csp6I GTAC 4 cut(s) 16, 329, 442, 868
CviQI GTAC 4 cut(s) 16, 329, 442, 868
DdeI CTNAG 8 cut(s) 75, 113, 206, 239, 701, 1234, 1440, 1458
DpnI GATC 2 cut(s) 509, 1474
DpnII GATC 2 cut(s) 507, 1472
EaeI YGGCCR 2 cut(s) 232, 1041
Eco105I TACGTA 1 cut(s) 732
Eco130I CCWWGG 3 cut(s) 125, 286, 471
Eco147I AGGCCT 2 cut(s) 103, 981
Eco24I GRGCYC 1 cut(s) 900
Eco47I GGWCC 3 cut(s) 35, 455, 1071
Eco57I CTGAAG 1 cut(s) 560
EcoT14I CCWWGG 3 cut(s) 125, 286, 471
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 3 cut(s) 125, 286, 471
FaqI GGGAC 3 cut(s) 489, 974, 1084
Fnu4HI GCNGC 9 cut(s) 23, 152, 420, 520, 690, 987, 990, 993, 1455
FokI GGATG 6 cut(s) 55, 1017, 1064, 1269, 1384, 1448
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 9 cut(s) 23, 152, 420, 520, 690, 987, 990, 993, 1455
FspBI CTAG 7 cut(s) 126, 131, 902, 977, 1019, 1193, 1341
GlaI GCGC 2 cut(s) 516, 518
GluI GCNGC 9 cut(s) 23, 152, 420, 520, 690, 987, 990, 993, 1455
GsaI CCCAGC 1 cut(s) 314
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 6 cut(s) 103, 124, 234, 814, 981, 1043
HapII CCGG 1 cut(s) 52
HgaI GACGC 1 cut(s) 1160
HhaI GCGC 2 cut(s) 517, 519
Hin1I GRCGYC 1 cut(s) 1152
Hin6I GCGC 2 cut(s) 515, 517
HinP1I GCGC 2 cut(s) 515, 517
HinfI GANTC 5 cut(s) 41, 55, 143, 282, 926
HpaII CCGG 1 cut(s) 52
Hpy166II GTNNAC 4 cut(s) 595, 670, 1282, 1450
Hpy188I TCNGA 7 cut(s) 10, 35, 240, 484, 507, 1177, 1382
Hpy188III TCNNGA 4 cut(s) 59, 804, 1081, 1210
Hpy8I GTNNAC 4 cut(s) 595, 670, 1282, 1450
HpyAV CCTTC 3 cut(s) 93, 584, 641
HpyCH4III ACNGT 2 cut(s) 337, 1511
HpyCH4IV ACGT 1 cut(s) 731
HpyCH4V TGCA 9 cut(s) 245, 272, 409, 542, 765, 942, 967, 992, 1478
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 269, 356, 762, 973, 992, 1271
HpyF3I CTNAG 8 cut(s) 75, 113, 206, 239, 701, 1234, 1440, 1458
HpySE526I ACGT 1 cut(s) 731
Hsp92I GRCGYC 1 cut(s) 1152
HspAI GCGC 2 cut(s) 515, 517
Kzo9I GATC 2 cut(s) 507, 1472
LmnI GCTCC 8 cut(s) 10, 94, 250, 260, 356, 371, 416, 903
Lsp1109I GCAGC 6 cut(s) 138, 431, 676, 973, 976, 1004
LweI GCATC 2 cut(s) 1086, 1426
MaeI CTAG 7 cut(s) 126, 131, 902, 977, 1019, 1193, 1341
MaeII ACGT 1 cut(s) 731
MaeIII GTNAC 2 cut(s) 214, 1148
MalI GATC 2 cut(s) 509, 1474
MboI GATC 2 cut(s) 507, 1472
MboII GAAGA 2 cut(s) 95, 1301
MfeI CAATTG 3 cut(s) 1245, 1314, 1490
MflI RGATCY 2 cut(s) 507, 1472
MhlI GDGCHC 1 cut(s) 900
MlsI TGGCCA 2 cut(s) 234, 1043
MluNI TGGCCA 2 cut(s) 234, 1043
MlyI GAGTC 3 cut(s) 35, 152, 920
Mox20I TGGCCA 2 cut(s) 234, 1043
Mph1103I ATGCAT 1 cut(s) 544
MscI TGGCCA 2 cut(s) 234, 1043
MseI TTAA 2 cut(s) 524, 822
MslI CAYNNNNRTG 3 cut(s) 115, 221, 240
Msp20I TGGCCA 2 cut(s) 234, 1043
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 52
MunI CAATTG 3 cut(s) 1245, 1314, 1490
Mva1269I GAATGC 1 cut(s) 1218
MvnI CGCG 3 cut(s) 517, 519, 1454
MwoI GCNNNNNNNGC 7 cut(s) 19, 269, 356, 762, 973, 992, 1271
NciI CCSGG 1 cut(s) 52
NcoI CCATGG 1 cut(s) 471
NdeII GATC 2 cut(s) 507, 1472
NheI GCTAGC 1 cut(s) 1192
NlaIV GGNNCC 5 cut(s) 262, 358, 572, 899, 1072
NmuCI GTSAC 2 cut(s) 214, 1148
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 3 cut(s) 205, 613, 967
OliI CACNNNNGTG 1 cut(s) 115
PauI GCGCGC 1 cut(s) 515
PceI AGGCCT 2 cut(s) 103, 981
PciI ACATGT 1 cut(s) 609
PctI GAATGC 1 cut(s) 1218
PfeI GAWTC 2 cut(s) 55, 282
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 9 cut(s) 24, 153, 421, 521, 691, 988, 991, 994, 1456
PleI GAGTC 3 cut(s) 35, 151, 920
PpsI GAGTC 3 cut(s) 35, 151, 920
Ppu21I YACGTR 1 cut(s) 732
PscI ACATGT 1 cut(s) 609
PspFI CCCAGC 1 cut(s) 310
PspN4I GGNNCC 5 cut(s) 262, 358, 572, 899, 1072
PspPI GGNCC 3 cut(s) 35, 455, 1071
PstI CTGCAG 1 cut(s) 994
PstNI CAGNNNCTG 1 cut(s) 1175
PsuI RGATCY 2 cut(s) 507, 1472
PteI GCGCGC 1 cut(s) 515
RsaI GTAC 4 cut(s) 17, 330, 443, 869
RsaNI GTAC 4 cut(s) 16, 329, 442, 868
RseI CAYNNNNRTG 3 cut(s) 115, 221, 240
SaqAI TTAA 2 cut(s) 524, 822
SatI GCNGC 9 cut(s) 23, 152, 420, 520, 690, 987, 990, 993, 1455
Sau3AI GATC 2 cut(s) 507, 1472
Sau96I GGNCC 3 cut(s) 35, 455, 1071
SchI GAGTC 3 cut(s) 35, 152, 920
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 1 cut(s) 900
SfaNI GCATC 2 cut(s) 1086, 1426
SfcI CTRYAG 2 cut(s) 105, 990
SinI GGWCC 3 cut(s) 35, 455, 1071
SmiMI CAYNNNNRTG 3 cut(s) 115, 221, 240
SnaBI TACGTA 1 cut(s) 732
SpeI ACTAGT 1 cut(s) 1340
SseBI AGGCCT 2 cut(s) 103, 981
SsiI CCGC 4 cut(s) 23, 72, 519, 1454
SspMI CTAG 7 cut(s) 126, 131, 902, 977, 1019, 1193, 1341
StuI AGGCCT 2 cut(s) 103, 981
StyD4I CCNGG 1 cut(s) 50
StyI CCWWGG 3 cut(s) 125, 286, 471
TaaI ACNGT 2 cut(s) 337, 1511
TaiI ACGT 1 cut(s) 734
TaqI TCGA 2 cut(s) 146, 1003
TaqII GACCGA 1 cut(s) 1295
TatI WGTACW 2 cut(s) 328, 441
TauI GCSGC 3 cut(s) 25, 522, 1457
TfiI GAWTC 2 cut(s) 55, 282
Tru1I TTAA 2 cut(s) 524, 822
Tru9I TTAA 2 cut(s) 524, 822
TscAI CASTG 3 cut(s) 705, 1105, 1423
TseFI GTSAC 2 cut(s) 214, 1148
TseI GCWGC 6 cut(s) 151, 419, 689, 986, 989, 992
Tsp45I GTSAC 2 cut(s) 214, 1148
TspDTI ATGAA 2 cut(s) 162, 959
TspGWI ACGGA 1 cut(s) 384
TspRI CASTG 3 cut(s) 705, 1105, 1423
VpaK11BI GGWCC 3 cut(s) 35, 455, 1071
XapI RAATTY 3 cut(s) 86, 807, 1046
XceI RCATGY 3 cut(s) 205, 613, 967
XmaJI CCTAGG 1 cut(s) 125
XspI CTAG 7 cut(s) 126, 131, 902, 977, 1019, 1193, 1341
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.