Prupe.3G180900_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
19674423 .. 19677769
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G180900.1

Sequence Viewer

Length: 1530 bp
ATGGGATCGGCAGAGGAGTACCAGCAGCCGCTACTACTCAGGCTTGATGACCAGCAGTCTCGGATTGCTGACTTGTCATCCACTTCCATTGAAGAGTTTCTGGGGCAACGGCAGCGGCCAGTTGAACTTCGATGGTGGTCTAGGCTAGTTGTTTGGGAGTCAAGGCTCCTCTGGACATTATCTGGTTCATCTATCACCGTTTCCGTATTCAACTACATGCTTAGCTTTGTCACCCTTATGTTTTGTGGGCATTTGAATGCCTTGGAGCTTGCTGGAGCCTCTATTGCTAGTGTTGGAATTCAGGGTCTTGCTTATGGCATTATGTTAGGAATGGCGAGTGCTGTGCAAACTGTTTGTGGGCAAGCATATGGAGCCAAACACTTACCAGCAATGGGAATTATATGCCAAAGGGCAATCATCTTGCACTTGGGAGCAGCAGTCCTCCTTACCTTTGTGTATTGGTGGTCAGGTCCAATACTTATAGCCATAGGCCAATCAGACGAAATAGCAGAGCAGGGCCAAATCTTTGCAAGGGGCATAATCCCTCAACTTTATGCCTTTGCCATAAACTGCCCTCAGCAGAGGTTCCTTCAAGCACAGAACATAGTCAACCCTCTGGCCTACATATCTGTTGCAGTTTTCGTACTACACATTATTCTCACTTGGGTGGTGGTTTTTGTTGTGGACTATGGCCTACTGGGGGCTGCTCTTATGCTGAGCTTCTCTTGGTGGCTTCTTGTCGTTATATATGGGCTTTATATTCGTCTAAGCCCCAGTTGCAAGGAAACTTGGACTGGCTTGTCTTGGAAAGCCTTCAAAGGAATGTGGCCTTACTTTAAGTTGACTGTTGCCTCTGCTATCATGCTATGTTTGGAGATATGGTACAACCAAGGGTTAACGCTCATATCAGGGCTCCTCCCCAACCCTACAGTCTCACTAGACTCGATCTCGATTTCGATGAACTACTGGAACTTCAGTTTGCAATTTATGTTAGGCCTAAGTGCGGCAGCCAGTGTTCGAGTCAGTAATGAGCTAGGGGCTGGTAATCCAAGAGTGGCCAAATTTTCGGTGTTTGTAGTTACCGGAACAAGCATCCTGATTAGTATAATATTCAGTGCAATTATATTGATATTCCGAACCGGATTGAGCAAGCTATTTACAAGTGATCCCGAGGTTGTCAAGGCAGTGTCTGATTTAACTCCATTGCTAGCCATCTCTGTTTTCTTGAATGGCATTCAACCTATACTCTCAGGTGTGGCAATTGGAAGTGGATGGCAAGCTGTTGTGGCATATGTTAACCTGACTTGTTACTACATTATCGGTCTTCCAATTGGATGTGTTCTTGGGTTTAAAACCAGTATGGGAGTGGCAGGAATTTGGTGGGGGATGCTTCTTGGAGTTTTTTTACAAACAGTAGCTCTAATTGTTCTCACTGCCAGAACAAATTGGGATGCCGAGGTTGTAAATGCGGCTGATCGCCTGAAGAGATCTGCAGATGCTGAACACTCAGACTTGGTGGTCTATGTCTGA

Protein Analysis

510

Amino Acids

55.72

Weight (kDa)

6.94

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 799, 1517
AciI CCGC 4 cut(s) 29, 115, 1004, 1469
AclWI GGATC 2 cut(s) 13, 1160
AcoI YGGCCR 2 cut(s) 116, 1056
AcsI RAATTY 3 cut(s) 297, 1061, 1374
AcuI CTGAAG 2 cut(s) 958, 1502
AfaI GTAC 3 cut(s) 20, 645, 884
AfiI CCNNNNNNNGG 3 cut(s) 392, 700, 1003
AgsI TTSAA 8 cut(s) 92, 125, 211, 256, 593, 817, 1228, 1238
AhdI GACNNNNNGTC 1 cut(s) 55
AleI CACNNNNGTG 1 cut(s) 665
AluBI AGCT 7 cut(s) 225, 268, 720, 1033, 1153, 1280, 1418
AluI AGCT 7 cut(s) 225, 268, 720, 1033, 1153, 1280, 1418
Alw26I GTCTC 2 cut(s) 63, 937
AlwI GGATC 2 cut(s) 13, 1160
AlwNI CAGNNNCTG 2 cut(s) 1190, 1499
Ama87I CYCGRG 1 cut(s) 1169
AoxI GGCC 8 cut(s) 116, 490, 517, 618, 691, 827, 994, 1056
ApeKI GCWGC 5 cut(s) 25, 112, 434, 704, 1007
ApoI RAATTY 3 cut(s) 297, 1061, 1374
Asp700I GAANNNNTTC 2 cut(s) 96, 812
AspS9I GGNCC 2 cut(s) 470, 517
AsuHPI GGTGA 2 cut(s) 187, 223
AsuNHI GCTAGC 1 cut(s) 1207
AvaI CYCGRG 1 cut(s) 1169
AvaII GGWCC 1 cut(s) 470
BalI TGGCCA 1 cut(s) 1058
BanII GRGCYC 1 cut(s) 915
BbsI GAAGAC 1 cut(s) 1316
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 5 cut(s) 37, 124, 446, 691, 1019
BccI CCATC 3 cut(s) 126, 1220, 1266
BceAI ACGGC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BcoDI GTCTC 2 cut(s) 63, 937
BfaI CTAG 6 cut(s) 141, 146, 288, 938, 1034, 1208
BfmI CTRYAG 2 cut(s) 927, 1491
BglII AGATCT 1 cut(s) 1487
BisI GCNGC 9 cut(s) 26, 29, 113, 116, 435, 705, 1005, 1008, 1470
BlpI GCTNAGC 2 cut(s) 221, 716
BlsI GCNGC 9 cut(s) 27, 30, 114, 117, 436, 706, 1006, 1009, 1471
Bme18I GGWCC 1 cut(s) 470
BmeRI GACNNNNNGTC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 1169
BmgT120I GGNCC 2 cut(s) 470, 517
BmiI GGNNCC 5 cut(s) 167, 277, 373, 587, 914
BmrI ACTGGG 2 cut(s) 707, 768
BmsI GCATC 4 cut(s) 1101, 1377, 1441, 1486
BmtI GCTAGC 1 cut(s) 1211
BmuI ACTGGG 2 cut(s) 707, 768
BpiI GAAGAC 1 cut(s) 1316
BpmI CTGGAG 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 576
Bpu1102I GCTNAGC 2 cut(s) 221, 716
BsaJI CCNNGG 4 cut(s) 261, 889, 1170, 1455
BsaWI WCCGGW 2 cut(s) 1082, 1139
BsaXI ACNNNNNCTCC 4 cut(s) 423, 453, 866, 896
Bsc4I CCNNNNNNNGG 3 cut(s) 392, 700, 1003
Bse1I ACTGG 7 cut(s) 119, 702, 774, 799, 971, 1011, 1356
Bse3DI GCAATG 2 cut(s) 396, 1202
BseDI CCNNGG 4 cut(s) 261, 889, 1170, 1455
BseGI GGATG 6 cut(s) 77, 1092, 1277, 1340, 1392, 1456
BseLI CCNNNNNNNGG 3 cut(s) 392, 700, 1003
BseMI GCAATG 2 cut(s) 396, 1202
BseMII CTCAG 5 cut(s) 52, 590, 707, 1263, 1521
BseNI ACTGG 7 cut(s) 119, 702, 774, 799, 971, 1011, 1356
BseRI GAGGAG 3 cut(s) 29, 158, 905
BseXI GCAGC 5 cut(s) 37, 124, 446, 691, 1019
BshFI GGCC 8 cut(s) 118, 492, 519, 620, 693, 829, 996, 1058
BsiHKCI CYCGRG 1 cut(s) 1169
BsiSI CCGG 2 cut(s) 1083, 1140
BslI CCNNNNNNNGG 3 cut(s) 392, 700, 1003
BsmAI GTCTC 2 cut(s) 63, 937
BsmI GAATGC 2 cut(s) 262, 1233
BsnI GGCC 8 cut(s) 118, 492, 519, 620, 693, 829, 996, 1058
BsoBI CYCGRG 1 cut(s) 1169
Bsp1286I GDGCHC 1 cut(s) 915
Bsp143I GATC 5 cut(s) 5, 945, 1165, 1474, 1487
Bsp1720I GCTNAGC 2 cut(s) 221, 716
BspACI CCGC 4 cut(s) 29, 115, 1004, 1469
BspANI GGCC 8 cut(s) 118, 492, 519, 620, 693, 829, 996, 1058
BspCNI CTCAG 5 cut(s) 51, 589, 708, 1262, 1520
BspLI GGNNCC 5 cut(s) 167, 277, 373, 587, 914
BspMAI CTGCAG 1 cut(s) 1495
BspOI GCTAGC 1 cut(s) 1211
BspPI GGATC 2 cut(s) 13, 1160
BsrDI GCAATG 2 cut(s) 396, 1202
BsrI ACTGG 7 cut(s) 119, 702, 774, 799, 971, 1011, 1356
BssECI CCNNGG 4 cut(s) 261, 889, 1170, 1455
BssMI GATC 5 cut(s) 5, 945, 1165, 1474, 1487
BssT1I CCWWGG 2 cut(s) 261, 889
Bst4CI ACNGT 5 cut(s) 199, 352, 847, 931, 1414
Bst6I CTCTTC 2 cut(s) 87, 1478
BstC8I GCNNGC 5 cut(s) 270, 363, 1151, 1209, 1278
BstDEI CTNAG 8 cut(s) 38, 221, 576, 716, 767, 998, 1249, 1507
BstF5I GGATG 6 cut(s) 77, 1092, 1277, 1340, 1392, 1456
BstKTI GATC 5 cut(s) 8, 948, 1168, 1477, 1490
BstMAI GTCTC 2 cut(s) 63, 937
BstMBI GATC 5 cut(s) 5, 945, 1165, 1474, 1487
BstMWI GCNNNNNNNGC 5 cut(s) 112, 284, 371, 777, 1286
BstNSI RCATGY 1 cut(s) 220
BstSFI CTRYAG 2 cut(s) 927, 1491
BstV1I GCAGC 5 cut(s) 37, 124, 446, 691, 1019
BstV2I GAAGAC 1 cut(s) 1316
BstX2I RGATCY 1 cut(s) 1487
BstYI RGATCY 1 cut(s) 1487
BsuRI GGCC 8 cut(s) 118, 492, 519, 620, 693, 829, 996, 1058
BtsCI GGATG 6 cut(s) 77, 1092, 1277, 1340, 1392, 1456
BtsI GCAGTG 2 cut(s) 1191, 1431
BtsIMutI CAGTG 4 cut(s) 1018, 1120, 1191, 1431
Cac8I GCNNGC 5 cut(s) 270, 363, 1151, 1209, 1278
CaiI CAGNNNCTG 2 cut(s) 1190, 1499
Cfr13I GGNCC 2 cut(s) 470, 517
Csp6I GTAC 3 cut(s) 19, 644, 883
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 2 cut(s) 217, 862
CviQI GTAC 3 cut(s) 19, 644, 883
DdeI CTNAG 8 cut(s) 38, 221, 576, 716, 767, 998, 1249, 1507
DpnI GATC 5 cut(s) 7, 947, 1167, 1476, 1489
DpnII GATC 5 cut(s) 5, 945, 1165, 1474, 1487
DraI TTTAAA 1 cut(s) 1351
DrdI GACNNNNNNGTC 2 cut(s) 799, 1517
DriI GACNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 2 cut(s) 799, 1517
EaeI YGGCCR 2 cut(s) 116, 1056
Eam1104I CTCTTC 2 cut(s) 87, 1478
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 2 cut(s) 87, 1478
Eco130I CCWWGG 2 cut(s) 261, 889
Eco147I AGGCCT 1 cut(s) 996
Eco24I GRGCYC 1 cut(s) 915
Eco47I GGWCC 1 cut(s) 470
Eco57I CTGAAG 2 cut(s) 958, 1502
Eco88I CYCGRG 1 cut(s) 1169
EcoRI GAATTC 1 cut(s) 297
EcoT14I CCWWGG 2 cut(s) 261, 889
EcoT38I GRGCYC 1 cut(s) 915
ErhI CCWWGG 2 cut(s) 261, 889
FaeI CATG 2 cut(s) 220, 865
FatI CATG 2 cut(s) 216, 861
FauNDI CATATG 2 cut(s) 367, 1291
Fnu4HI GCNGC 9 cut(s) 26, 29, 113, 116, 435, 705, 1005, 1008, 1470
FokI GGATG 6 cut(s) 64, 1079, 1284, 1347, 1399, 1463
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 9 cut(s) 26, 29, 113, 116, 435, 705, 1005, 1008, 1470
FspBI CTAG 6 cut(s) 141, 146, 288, 938, 1034, 1208
GluI GCNGC 9 cut(s) 26, 29, 113, 116, 435, 705, 1005, 1008, 1470
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 8 cut(s) 118, 492, 519, 620, 693, 829, 996, 1058
HapII CCGG 2 cut(s) 1083, 1140
Hin1II CATG 2 cut(s) 220, 865
HincII GTYRAC 4 cut(s) 610, 843, 897, 1297
HindII GTYRAC 4 cut(s) 610, 843, 897, 1297
HinfI GANTC 3 cut(s) 158, 941, 1020
HpaI GTTAAC 2 cut(s) 897, 1297
HpaII CCGG 2 cut(s) 1083, 1140
HphI GGTGA 2 cut(s) 187, 223
Hpy166II GTNNAC 5 cut(s) 610, 685, 843, 897, 1297
Hpy188I TCNGA 6 cut(s) 63, 499, 1136, 1192, 1510, 1529
Hpy188III TCNNGA 5 cut(s) 172, 949, 1096, 1169, 1225
Hpy8I GTNNAC 5 cut(s) 610, 685, 843, 897, 1297
HpyAV CCTTC 2 cut(s) 599, 823
HpyCH4III ACNGT 5 cut(s) 199, 352, 847, 931, 1414
HpyCH4V TGCA 8 cut(s) 346, 424, 530, 635, 780, 982, 1118, 1493
HpyF10VI GCNNNNNNNGC 5 cut(s) 112, 284, 371, 777, 1286
HpyF3I CTNAG 8 cut(s) 38, 221, 576, 716, 767, 998, 1249, 1507
Hsp92II CATG 2 cut(s) 220, 865
KspAI GTTAAC 2 cut(s) 897, 1297
Kzo9I GATC 5 cut(s) 5, 945, 1165, 1474, 1487
LmnI GCTCC 6 cut(s) 171, 265, 275, 371, 431, 918
Lsp1109I GCAGC 5 cut(s) 37, 124, 446, 691, 1019
LweI GCATC 4 cut(s) 1101, 1377, 1441, 1486
MaeI CTAG 6 cut(s) 141, 146, 288, 938, 1034, 1208
MaeIII GTNAC 3 cut(s) 229, 1078, 1307
MalI GATC 5 cut(s) 7, 947, 1167, 1476, 1489
MboI GATC 5 cut(s) 5, 945, 1165, 1474, 1487
MboII GAAGA 3 cut(s) 104, 1316, 1495
MfeI CAATTG 2 cut(s) 1260, 1329
MflI RGATCY 1 cut(s) 1487
MhlI GDGCHC 1 cut(s) 915
MlsI TGGCCA 1 cut(s) 1058
MluNI TGGCCA 1 cut(s) 1058
MlyI GAGTC 3 cut(s) 167, 935, 1029
MmeI TCCRAC 1 cut(s) 274
Mox20I TGGCCA 1 cut(s) 1058
MroXI GAANNNNTTC 2 cut(s) 96, 812
MscI TGGCCA 1 cut(s) 1058
MseI TTAA 5 cut(s) 837, 896, 1196, 1296, 1350
MslI CAYNNNNRTG 3 cut(s) 236, 255, 665
Msp20I TGGCCA 1 cut(s) 1058
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 2 cut(s) 1083, 1140
MunI CAATTG 2 cut(s) 1260, 1329
Mva1269I GAATGC 2 cut(s) 262, 1233
MwoI GCNNNNNNNGC 5 cut(s) 112, 284, 371, 777, 1286
NdeI CATATG 2 cut(s) 367, 1291
NdeII GATC 5 cut(s) 5, 945, 1165, 1474, 1487
NheI GCTAGC 1 cut(s) 1207
NlaIII CATG 2 cut(s) 220, 865
NlaIV GGNNCC 5 cut(s) 167, 277, 373, 587, 914
NmeAIII GCCGAG 1 cut(s) 1480
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 220
OliI CACNNNNGTG 1 cut(s) 665
PceI AGGCCT 1 cut(s) 996
PctI GAATGC 2 cut(s) 262, 1233
PdmI GAANNNNTTC 2 cut(s) 96, 812
PkrI GCNGC 9 cut(s) 27, 30, 114, 117, 436, 706, 1006, 1009, 1471
PleI GAGTC 3 cut(s) 166, 935, 1028
PpsI GAGTC 3 cut(s) 166, 935, 1028
PspN4I GGNNCC 5 cut(s) 167, 277, 373, 587, 914
PspPI GGNCC 2 cut(s) 470, 517
PstI CTGCAG 1 cut(s) 1495
PstNI CAGNNNCTG 2 cut(s) 1190, 1499
PsuI RGATCY 1 cut(s) 1487
RsaI GTAC 3 cut(s) 20, 645, 884
RsaNI GTAC 3 cut(s) 19, 644, 883
RseI CAYNNNNRTG 3 cut(s) 236, 255, 665
SaqAI TTAA 5 cut(s) 837, 896, 1196, 1296, 1350
SatI GCNGC 9 cut(s) 26, 29, 113, 116, 435, 705, 1005, 1008, 1470
Sau3AI GATC 5 cut(s) 5, 945, 1165, 1474, 1487
Sau96I GGNCC 2 cut(s) 470, 517
SchI GAGTC 3 cut(s) 167, 935, 1029
SduI GDGCHC 1 cut(s) 915
SfaNI GCATC 4 cut(s) 1101, 1377, 1441, 1486
SfcI CTRYAG 2 cut(s) 927, 1491
SinI GGWCC 1 cut(s) 470
SmiMI CAYNNNNRTG 3 cut(s) 236, 255, 665
SseBI AGGCCT 1 cut(s) 996
SsiI CCGC 4 cut(s) 29, 115, 1004, 1469
SspI AATATT 1 cut(s) 1110
SspMI CTAG 6 cut(s) 141, 146, 288, 938, 1034, 1208
StuI AGGCCT 1 cut(s) 996
StyI CCWWGG 2 cut(s) 261, 889
TaaI ACNGT 5 cut(s) 199, 352, 847, 931, 1414
TaqI TCGA 5 cut(s) 130, 944, 950, 956, 1018
TaqII GACCGA 1 cut(s) 1310
TauI GCSGC 4 cut(s) 31, 118, 1007, 1472
Tru1I TTAA 5 cut(s) 837, 896, 1196, 1296, 1350
Tru9I TTAA 5 cut(s) 837, 896, 1196, 1296, 1350
TscAI CASTG 4 cut(s) 1018, 1120, 1191, 1438
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 5 cut(s) 25, 112, 434, 704, 1007
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 177, 974
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 4 cut(s) 1018, 1120, 1191, 1438
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 3 cut(s) 297, 1061, 1374
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 1363
XmnI GAANNNNTTC 2 cut(s) 96, 812
XspI CTAG 6 cut(s) 141, 146, 288, 938, 1034, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.