RLG00000011817

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
12933846 .. 12936511
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011817

Sequence Viewer

Length: 1521 bp
ATGGGGTCATCGGAACAGTACCGGCCGCTACTCCTCGGACTCGACTCACATTCCCGGATTCCTGACTTGTCATCCGTCGCGATTGAAGAATTTTTGGAGCAAAGGCCTGTAGCATTGAGGTGGTGGCCTAGGCTAGTGGCATGGGAGTCGAGACTGCTATGGCTTTTATCCGGTGCGTCTATTGCAGTTTCGGTTTTCAATTACATGCTCAGCTTTGTCACGCTTATGTTCTGTGGCCATCTGGGTTCATTGGAGCTTGCTGGAGCGTCTATTGCTAGTGTGGGAATCCAAGGTCTTGCTTATGGGATTATGTTGGGCATGGCGAGTGCTGTACAAACTGTTTGTGGGCAAGCCTATGGAGCCAAACACTTGGGAGCAATGGGAATTATATGCCAAAGAGCAATCGTCTTGCACTTGGGAGCAGCAGTCCTCCTTACATTTTTGTACTGGTGGTCAGGTCCATTACTCGTAGCCATGGGGCAATCAGAAAGCATAGCAGAACAGGGTCAAATCTTTGCGCGTGGTTTAATCCCTCAACTCTATGCCTTTGCCATAAACTGCCCACAACAGAGGTTCCTCCAGGCACAGAACATAGTGAACCCTTTGGCATACATGTCCATTGGAGTTTTCCTCCTTCACACTCTTCTCACCTGGTTGGTGGTTTATGTAGTGGACTATGGACTGATAGGTGCTGCTCTTACACTGAGCTTTTCTTGGTATTTACTTGTGATTACAAATGGGATTTACATTCTCGTAAGCCCCAACTGCAAGGAAACTTGGACTGGTTTCTCATGGAAAGCCTTTTCCGGAATTTGGCCTTATTTTAAGCTAACTATTGCTTCTGCTGTCATGTTGTGTTTGGAAATTTGGTACTCTCAAGGGTTAGTGCTTATCTCAGGGCTCCTACCCAACCCTACAATCTCACTGGACTCCATTTCTATCTGCATGAACTACTTGAACTGGGACATGCAATTTATGCTAGGTCTTGCTGCTGCAGCAAGTGTTCGGGTTAGTAATGAACTAGGGGCTGGTCATCCAAAGGTGGCCAAATTTTCGGTGTTTGTAGTGAACGGGACCAGCATCCTTATTAGCATAGTGTTCAGTGCTATTGTGCTGATATTCAAAGTTGGATTGAGCAAGCTGTTTACAAGTGACGACGATGTTATTGATGCAGTGTCTAGTTTGACCCCCTTGCTAGCCATCTCTGTTTTCTTGAATGGCATTCAACCTATACTCTCAGGTGTGGCAATTGGAAGTGGATGGCAAGCTATTGTAGCTTATGTGAACCTGTCTTGTTACTACGTTATCGGTCTTCCAATTGCGTGTGTTCTTGGCTTCAAAACTAGTATGGGAGTAAATGGTATTTGGTGGGGGATGGTTATTGGAGTATTTTTACAGACAATAACTCTAATTGTTCTCACTGCCAGAACCAATTGGGATGCTGAGGTTGTAAAGGCGGTTGAGAGATTGAGGTCATCTGCAAATGTAGAACAGTTGCTCTTGGTGGATGACGACGTATGA

Protein Analysis

507

Amino Acids

55.0

Weight (kDa)

5.87

Isoelectric Point (pI)

24.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 61 - 219 2.8e-28 MatE
MatE PF01554 281 - 441 9.2e-27 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 80, 520
AccIII TCCGGA 1 cut(s) 806
AciI CCGC 2 cut(s) 26, 1457
AcoI YGGCCR 3 cut(s) 23, 235, 1044
AcsI RAATTY 4 cut(s) 89, 810, 864, 1049
AfaI GTAC 4 cut(s) 20, 333, 446, 872
AfiI CCNNNNNNNGG 1 cut(s) 813
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 7 cut(s) 86, 199, 958, 1123, 1216, 1226, 1339
AhlI ACTAGT 1 cut(s) 1343
AjnI CCWGG 2 cut(s) 579, 650
AluBI AGCT 7 cut(s) 213, 256, 708, 829, 1141, 1268, 1277
AluI AGCT 7 cut(s) 213, 256, 708, 829, 1141, 1268, 1277
Alw26I GTCTC 1 cut(s) 145
Aor13HI TCCGGA 1 cut(s) 806
AoxI GGCC 6 cut(s) 23, 104, 125, 235, 815, 1044
ApeKI GCWGC 5 cut(s) 422, 692, 989, 992, 995
ApoI RAATTY 4 cut(s) 89, 810, 864, 1049
AspA2I CCTAGG 1 cut(s) 128
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 2 cut(s) 458, 1074
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 640
AsuNHI GCTAGC 1 cut(s) 1195
AvaII GGWCC 2 cut(s) 458, 1074
AvrII CCTAGG 1 cut(s) 128
BalI TGGCCA 2 cut(s) 237, 1046
BanII GRGCYC 1 cut(s) 903
BbsI GAAGAC 1 cut(s) 1304
BbvCI CCTCAGC 1 cut(s) 1443
BbvI GCAGC 5 cut(s) 434, 679, 976, 979, 1007
BccI CCATC 4 cut(s) 246, 1208, 1254, 1369
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 2 cut(s) 581, 652
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 145
BcuI ACTAGT 1 cut(s) 1343
BfaI CTAG 8 cut(s) 129, 134, 276, 980, 1022, 1179, 1196, 1344
BfmI CTRYAG 2 cut(s) 108, 993
BisI GCNGC 6 cut(s) 26, 423, 693, 990, 993, 996
BlnI CCTAGG 1 cut(s) 128
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 6 cut(s) 27, 424, 694, 991, 994, 997
Bme1390I CCNGG 3 cut(s) 55, 581, 652
Bme18I GGWCC 2 cut(s) 458, 1074
BmgT120I GGNCC 2 cut(s) 458, 1074
BmiI GGNNCC 4 cut(s) 361, 575, 902, 1075
BmrFI CCNGG 3 cut(s) 55, 581, 652
BmrI ACTGGG 1 cut(s) 970
BmsI GCATC 3 cut(s) 1089, 1159, 1429
BmtI GCTAGC 1 cut(s) 1199
BmuI ACTGGG 1 cut(s) 970
BpiI GAAGAC 1 cut(s) 1304
BplI GAGNNNNNCTC 2 cut(s) 615, 647
BpmI CTGGAG 2 cut(s) 282, 563
Bpu10I CCTNAGC 1 cut(s) 1443
Bpu1102I GCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 4 cut(s) 34, 128, 289, 474
BsaWI WCCGGW 2 cut(s) 170, 806
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 813
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 4 cut(s) 452, 787, 930, 965
Bse3DI GCAATG 1 cut(s) 384
BseAI TCCGGA 1 cut(s) 806
BseBI CCWGG 2 cut(s) 581, 652
BseDI CCNNGG 4 cut(s) 34, 128, 289, 474
BseGI GGATG 7 cut(s) 71, 1033, 1080, 1265, 1380, 1444, 1513
BseLI CCNNNNNNNGG 1 cut(s) 813
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 5 cut(s) 223, 695, 909, 1251, 1434
BseNI ACTGG 4 cut(s) 452, 787, 930, 965
BseRI GAGGAG 1 cut(s) 23
BseX3I CGGCCG 1 cut(s) 23
BseXI GCAGC 5 cut(s) 434, 679, 976, 979, 1007
Bsh1236I CGCG 2 cut(s) 80, 520
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 6 cut(s) 25, 106, 127, 237, 817, 1046
BsiEI CGRYCG 1 cut(s) 26
BsiSI CCGG 4 cut(s) 22, 55, 171, 807
BslFI GGGAC 2 cut(s) 977, 1087
BslI CCNNNNNNNGG 1 cut(s) 813
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 2 cut(s) 977, 1087
BsmI GAATGC 1 cut(s) 1221
BsnI GGCC 6 cut(s) 25, 106, 127, 237, 817, 1046
Bsp1286I GDGCHC 1 cut(s) 903
Bsp13I TCCGGA 1 cut(s) 806
Bsp1407I TGTACA 1 cut(s) 331
Bsp1720I GCTNAGC 1 cut(s) 209
Bsp19I CCATGG 1 cut(s) 474
Bsp68I TCGCGA 1 cut(s) 80
BspACI CCGC 2 cut(s) 26, 1457
BspANI GGCC 6 cut(s) 25, 106, 127, 237, 817, 1046
BspCNI CTCAG 5 cut(s) 222, 696, 908, 1250, 1435
BspEI TCCGGA 1 cut(s) 806
BspFNI CGCG 2 cut(s) 80, 520
BspLI GGNNCC 4 cut(s) 361, 575, 902, 1075
BspMAI CTGCAG 1 cut(s) 997
BspOI GCTAGC 1 cut(s) 1199
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 4 cut(s) 452, 787, 930, 965
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 4 cut(s) 34, 128, 289, 474
BssT1I CCWWGG 3 cut(s) 128, 289, 474
Bst2UI CCWGG 2 cut(s) 581, 652
Bst4CI ACNGT 3 cut(s) 18, 340, 1494
Bst6I CTCTTC 1 cut(s) 648
BstAPI GCANNNNNTGC 1 cut(s) 976
BstAUI TGTACA 1 cut(s) 331
BstC8I GCNNGC 5 cut(s) 258, 351, 1139, 1197, 1266
BstDEI CTNAG 5 cut(s) 209, 704, 895, 1237, 1443
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 7 cut(s) 71, 1033, 1080, 1265, 1380, 1444, 1513
BstFNI CGCG 2 cut(s) 80, 520
BstHHI GCGC 1 cut(s) 520
BstMAI GTCTC 1 cut(s) 145
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 7 cut(s) 182, 272, 359, 765, 976, 995, 1274
BstNI CCWGG 2 cut(s) 581, 652
BstNSI RCATGY 3 cut(s) 208, 616, 970
BstSCI CCNGG 3 cut(s) 53, 579, 650
BstSFI CTRYAG 2 cut(s) 108, 993
BstUI CGCG 2 cut(s) 80, 520
BstV1I GCAGC 5 cut(s) 434, 679, 976, 979, 1007
BstV2I GAAGAC 1 cut(s) 1304
BstXI CCANNNNNNTGG 1 cut(s) 370
BstZI CGGCCG 1 cut(s) 23
BsuRI GGCC 6 cut(s) 25, 106, 127, 237, 817, 1046
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 7 cut(s) 71, 1033, 1080, 1265, 1380, 1444, 1513
BtsI GCAGTG 2 cut(s) 1179, 1419
BtsIMutI CAGTG 5 cut(s) 701, 923, 1108, 1179, 1419
BtuMI TCGCGA 1 cut(s) 80
Cac8I GCNNGC 5 cut(s) 258, 351, 1139, 1197, 1266
CfoI GCGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 458, 1074
CseI GACGC 2 cut(s) 165, 255
CsiI ACCWGGT 1 cut(s) 650
Csp6I GTAC 4 cut(s) 19, 332, 445, 871
CviAII CATG 9 cut(s) 141, 205, 319, 475, 613, 792, 850, 946, 967
CviQI GTAC 4 cut(s) 19, 332, 445, 871
DdeI CTNAG 5 cut(s) 209, 704, 895, 1237, 1443
EaeI YGGCCR 3 cut(s) 23, 235, 1044
EagI CGGCCG 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
EclXI CGGCCG 1 cut(s) 23
Eco130I CCWWGG 3 cut(s) 128, 289, 474
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 903
Eco47I GGWCC 2 cut(s) 458, 1074
Eco52I CGGCCG 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 579, 650
EcoT14I CCWWGG 3 cut(s) 128, 289, 474
EcoT38I GRGCYC 1 cut(s) 903
ErhI CCWWGG 3 cut(s) 128, 289, 474
FaeI CATG 9 cut(s) 144, 208, 322, 478, 616, 795, 853, 949, 970
FaqI GGGAC 2 cut(s) 977, 1087
FatI CATG 9 cut(s) 140, 204, 318, 474, 612, 791, 849, 945, 966
Fnu4HI GCNGC 6 cut(s) 26, 423, 693, 990, 993, 996
FokI GGATG 6 cut(s) 58, 1020, 1067, 1272, 1387, 1451
FriOI GRGCYC 1 cut(s) 903
Fsp4HI GCNGC 6 cut(s) 26, 423, 693, 990, 993, 996
FspBI CTAG 8 cut(s) 129, 134, 276, 980, 1022, 1179, 1196, 1344
GlaI GCGC 1 cut(s) 519
GluI GCNGC 6 cut(s) 26, 423, 693, 990, 993, 996
GsuI CTGGAG 2 cut(s) 282, 563
HaeIII GGCC 6 cut(s) 25, 106, 127, 237, 817, 1046
HapII CCGG 4 cut(s) 22, 55, 171, 807
HgaI GACGC 2 cut(s) 165, 255
HhaI GCGC 1 cut(s) 520
Hin1II CATG 9 cut(s) 144, 208, 322, 478, 616, 795, 853, 949, 970
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HinfI GANTC 6 cut(s) 39, 44, 58, 146, 285, 929
HpaII CCGG 4 cut(s) 22, 55, 171, 807
HphI GGTGA 1 cut(s) 640
Hpy166II GTNNAC 5 cut(s) 598, 673, 1069, 1146, 1285
Hpy188I TCNGA 3 cut(s) 13, 38, 487
Hpy188III TCNNGA 5 cut(s) 62, 79, 150, 807, 1213
Hpy8I GTNNAC 5 cut(s) 598, 673, 1069, 1146, 1285
Hpy99I CGWCG 3 cut(s) 80, 1160, 1517
HpyAV CCTTC 1 cut(s) 644
HpyCH4III ACNGT 3 cut(s) 18, 340, 1494
HpyCH4IV ACGT 2 cut(s) 1302, 1515
HpyCH4V TGCA 8 cut(s) 185, 412, 768, 945, 970, 995, 1172, 1481
HpyF10VI GCNNNNNNNGC 7 cut(s) 182, 272, 359, 765, 976, 995, 1274
HpyF3I CTNAG 5 cut(s) 209, 704, 895, 1237, 1443
HpySE526I ACGT 2 cut(s) 1302, 1515
Hsp92II CATG 9 cut(s) 144, 208, 322, 478, 616, 795, 853, 949, 970
HspAI GCGC 1 cut(s) 518
Kpn2I TCCGGA 1 cut(s) 806
LmnI GCTCC 7 cut(s) 97, 253, 263, 359, 374, 419, 906
Lsp1109I GCAGC 5 cut(s) 434, 679, 976, 979, 1007
LweI GCATC 3 cut(s) 1089, 1159, 1429
MabI ACCWGGT 1 cut(s) 650
MaeI CTAG 8 cut(s) 129, 134, 276, 980, 1022, 1179, 1196, 1344
MaeII ACGT 2 cut(s) 1302, 1515
MaeIII GTNAC 3 cut(s) 217, 1151, 1295
MboII GAAGA 3 cut(s) 98, 635, 1304
MfeI CAATTG 3 cut(s) 1248, 1317, 1432
MhlI GDGCHC 1 cut(s) 903
MlsI TGGCCA 2 cut(s) 237, 1046
MluNI TGGCCA 2 cut(s) 237, 1046
MlyI GAGTC 4 cut(s) 33, 38, 155, 923
MmeI TCCRAC 1 cut(s) 1108
MnlI CCTC 9 cut(s) 44, 111, 440, 543, 564, 587, 641, 1438, 1464
Mox20I TGGCCA 2 cut(s) 237, 1046
MroI TCCGGA 1 cut(s) 806
MscI TGGCCA 2 cut(s) 237, 1046
MseI TTAA 2 cut(s) 527, 825
MslI CAYNNNNRTG 2 cut(s) 118, 224
Msp20I TGGCCA 2 cut(s) 237, 1046
MspI CCGG 4 cut(s) 22, 55, 171, 807
MspR9I CCNGG 3 cut(s) 55, 581, 652
MunI CAATTG 3 cut(s) 1248, 1317, 1432
Mva1269I GAATGC 1 cut(s) 1221
MvaI CCWGG 2 cut(s) 581, 652
MvnI CGCG 2 cut(s) 80, 520
MwoI GCNNNNNNNGC 7 cut(s) 182, 272, 359, 765, 976, 995, 1274
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 474
NheI GCTAGC 1 cut(s) 1195
NlaIII CATG 9 cut(s) 144, 208, 322, 478, 616, 795, 853, 949, 970
NlaIV GGNNCC 4 cut(s) 361, 575, 902, 1075
NmuCI GTSAC 2 cut(s) 217, 1151
NruI TCGCGA 1 cut(s) 80
NspI RCATGY 3 cut(s) 208, 616, 970
PceI AGGCCT 1 cut(s) 106
PciI ACATGT 1 cut(s) 612
PctI GAATGC 1 cut(s) 1221
PfeI GAWTC 2 cut(s) 58, 285
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 6 cut(s) 27, 424, 694, 991, 994, 997
PleI GAGTC 4 cut(s) 33, 38, 154, 923
PpsI GAGTC 4 cut(s) 33, 38, 154, 923
PscI ACATGT 1 cut(s) 612
Psp6I CCWGG 2 cut(s) 579, 650
PspGI CCWGG 2 cut(s) 579, 650
PspN4I GGNNCC 4 cut(s) 361, 575, 902, 1075
PspPI GGNCC 2 cut(s) 458, 1074
PstI CTGCAG 1 cut(s) 997
RruI TCGCGA 1 cut(s) 80
RsaI GTAC 4 cut(s) 20, 333, 446, 872
RsaNI GTAC 4 cut(s) 19, 332, 445, 871
RseI CAYNNNNRTG 2 cut(s) 118, 224
SaqAI TTAA 2 cut(s) 527, 825
SatI GCNGC 6 cut(s) 26, 423, 693, 990, 993, 996
Sau96I GGNCC 2 cut(s) 458, 1074
SchI GAGTC 4 cut(s) 33, 38, 155, 923
ScrFI CCNGG 3 cut(s) 55, 581, 652
SduI GDGCHC 1 cut(s) 903
SexAI ACCWGGT 1 cut(s) 650
SfaNI GCATC 3 cut(s) 1089, 1159, 1429
SfcI CTRYAG 2 cut(s) 108, 993
SinI GGWCC 2 cut(s) 458, 1074
SmiMI CAYNNNNRTG 2 cut(s) 118, 224
SmlI CTYRAG 1 cut(s) 876
SmoI CTYRAG 1 cut(s) 876
SpeI ACTAGT 1 cut(s) 1343
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 2 cut(s) 26, 1457
SspMI CTAG 8 cut(s) 129, 134, 276, 980, 1022, 1179, 1196, 1344
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 3 cut(s) 53, 579, 650
StyI CCWWGG 3 cut(s) 128, 289, 474
TaaI ACNGT 3 cut(s) 18, 340, 1494
TaiI ACGT 2 cut(s) 1305, 1518
TaqI TCGA 2 cut(s) 42, 149
TaqII GACCGA 1 cut(s) 1298
TatI WGTACW 2 cut(s) 331, 444
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 2 cut(s) 58, 285
Tru1I TTAA 2 cut(s) 527, 825
Tru9I TTAA 2 cut(s) 527, 825
TscAI CASTG 5 cut(s) 708, 930, 1108, 1179, 1426
TseFI GTSAC 2 cut(s) 217, 1151
TseI GCWGC 5 cut(s) 422, 692, 989, 992, 995
Tsp45I GTSAC 2 cut(s) 217, 1151
TspDTI ATGAA 3 cut(s) 237, 962, 1032
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 5 cut(s) 708, 930, 1108, 1179, 1426
VpaK11BI GGWCC 2 cut(s) 458, 1074
XapI RAATTY 4 cut(s) 89, 810, 864, 1049
XceI RCATGY 3 cut(s) 208, 616, 970
XmaJI CCTAGG 1 cut(s) 128
XspI CTAG 8 cut(s) 129, 134, 276, 980, 1022, 1179, 1196, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.