MD17G1131800.v1.1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
11642497 .. 11645674
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1131800.v1.1.491

Sequence Viewer

Length: 1539 bp
ATGGGATCGGTGGAGGAGATCCAGCAGCCGCTGCTGCTCGGATTTGACACGCATTCTCGGCTTGCTGATTTGTCATCCCCTGCTGTTGAAGAGTTTCTAGGGCACCGGCCAGTGGCACTCTGGTGGTGGCCTAGGCTGGTGGTTTGGGAGTCAAGACTCCTATGGATTTTATCTGGTTCATCTATTATTGTTTCCGTATTCAACTATATGCTAAGCTTTGTCACCCTCATGTTTTGTGGGCATTTGAGTGCCTTGGAGCTTGCCGGAGCCTCTATCGCTAGTGTGGGAATTCAGGGTCTTGCTTATGGGATTATGTTGGGAATGGCAAGTGCTGTGCAAACTGTGTGTGGGCAAGCGTATGGGGCCAAACAATTGCCAGCAATGGGAATCATATGCCAAAGAGCAATCATCTTGCACTTGGGAGCAGCAATCCTCCTCTCATTTGTGTATTGGTGGTCAGGTCCTATCCTCGTAGCCATCGGGCAATCAGAAGAAATAGCAGAGCAAGGCCAAATCTTTGCAAGAGGAATTATTCCTCAGCTTTTTGCATTTGCCATAAACTGCCCCCAGCAGAGGTTCCTTCAAGCTCAAAACATAGTCAACCCTTTGGCTTACATGTCTGTTGGAGTTTTCATCCTTCACATTCTTCTCAATTGGGTGGTGGTTTTTGTTGTGGATTATGGCCTAATTGGGGCTGCTCTTACACTGAGCTTCTCTTGGTGGCTTCTTGTCATTATATATGGGCTTTACATTCTTTTGAGTCCCAAGTGCAAGGAGACTTGGACTGGCTTCTCTTGGAAAGCCTTCAAAGGGATGTGGCCTTATTTCAAGTTGACTGTTGCCTCTGCTACCATGCTCTGTTTGGAGATATGGTACAACCAAGGGCTAACACTAATATCAGGGCTCCTCCCCAACCCTACAATCTCACTAGACTCCATTTCTATTTGCATGAACTACTGGAACTTCAGTTTGCAATTTATGTTAGGCCTAAGCGCAGCGGCCAGTGTCCGAGTCAGTAACGAGTTAGGGGCTGGTCATCCAAGGGTGGCGAAATTTTCAGTGTTTGTAGTGAACGGAACAAGCATCCTGATTAGTATAATCTTCAGTGCGATTATATTAATATTCCGAGTTGGACTTAGCAAGCTATTTACAAGTGATGCTGATGTTGTTGAGGCGGTGTTGGATTTAACTCCATTACTAGTTGTTTCCGTTTTCTTGAATGGCATTCAACCAATACTCTCAGGTGTGGCAATTGGAAGCGGATGGCAAGATGTCGTGGCTTATGTCAACCTCGTTTGTTACTATATAATTGGTTTTCCAGTTGGATGTCTTCTTGGCTTCAAAGCTAGTATGGGAGTCGCGGGGATTTGGTGGGGGATGCTTATCGGAGTTTTTTTACAAACAGTAGTTCTAATTGTTCTAACTGCCAGAACAAATTGGGATGCCGAGGTTCTAAAAGCCGCTGATCGCTTGGACAAGTCTGCAAATGAAGAAAACACAGACATGGTGGTCTCCGAGCGCGTAAGCCCAAGGCCATGA

Protein Analysis

513

Amino Acids

56.02

Weight (kDa)

5.89

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 61 - 220 9.8e-31 MatE
MatE PF01554 283 - 442 3.3e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1508
AccB1I GGYRCC 1 cut(s) 102
AccII CGCG 2 cut(s) 1361, 1521
AciI CCGC 6 cut(s) 29, 998, 1175, 1260, 1361, 1461
AclWI GGATC 2 cut(s) 13, 13
AcoI YGGCCR 2 cut(s) 107, 999
AcsI RAATTY 2 cut(s) 288, 1052
AcuI CTGAAG 2 cut(s) 949, 1087
AfaI GTAC 1 cut(s) 875
AfiI CCNNNNNNNGG 5 cut(s) 112, 383, 573, 691, 810
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 8 cut(s) 89, 202, 584, 808, 829, 1219, 1229, 1342
AhlI ACTAGT 1 cut(s) 1198
AleI CACNNNNGTG 1 cut(s) 121
AluBI AGCT 7 cut(s) 216, 259, 541, 587, 711, 1144, 1346
AluI AGCT 7 cut(s) 216, 259, 541, 587, 711, 1144, 1346
Alw26I GTCTC 2 cut(s) 770, 1516
AlwI GGATC 2 cut(s) 13, 13
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 9 cut(s) 107, 128, 363, 508, 682, 818, 985, 999, 1532
ApeKI GCWGC 6 cut(s) 25, 31, 34, 425, 695, 995
ApoI RAATTY 2 cut(s) 288, 1052
AseI ATTAAT 1 cut(s) 1118
Asp700I GAANNNNTTC 2 cut(s) 93, 803
AspA2I CCTAGG 1 cut(s) 131
AspLEI GCGC 2 cut(s) 995, 1521
AspS9I GGNCC 2 cut(s) 363, 461
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 461
AvrII CCTAGG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 906
BbsI GAAGAC 1 cut(s) 1322
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 6 cut(s) 18, 21, 37, 437, 682, 1007
BccI CCATC 2 cut(s) 485, 1257
BcoDI GTCTC 2 cut(s) 770, 1516
BcuI ACTAGT 1 cut(s) 1198
BfaI CTAG 6 cut(s) 98, 132, 279, 929, 1199, 1347
BisI GCNGC 9 cut(s) 26, 29, 32, 35, 426, 696, 996, 999, 1461
BlnI CCTAGG 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 212
BlsI GCNGC 9 cut(s) 27, 30, 33, 36, 427, 697, 997, 1000, 1462
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 363, 461
BmiI GGNNCC 5 cut(s) 104, 268, 364, 578, 905
BmsI GCATC 4 cut(s) 1092, 1147, 1368, 1432
BpiI GAAGAC 1 cut(s) 1322
Bpu10I CCTNAGC 2 cut(s) 537, 989
Bpu1102I GCTNAGC 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 1382
BsaI GGTCTC 1 cut(s) 1516
BsaJI CCNNGG 6 cut(s) 131, 252, 880, 1040, 1446, 1529
BsaXI ACNNNNNCTCC 2 cut(s) 857, 887
Bsc4I CCNNNNNNNGG 5 cut(s) 112, 383, 573, 691, 810
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 5 cut(s) 110, 790, 962, 1002, 1319
Bse3DI GCAATG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 1382
BseDI CCNNGG 6 cut(s) 131, 252, 880, 1040, 1446, 1529
BseGI GGATG 9 cut(s) 74, 633, 819, 1036, 1083, 1268, 1331, 1383, 1447
BseJI GATNNNNATC 1 cut(s) 1382
BseLI CCNNNNNNNGG 5 cut(s) 112, 383, 573, 691, 810
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 3 cut(s) 551, 698, 1254
BseNI ACTGG 5 cut(s) 110, 790, 962, 1002, 1319
BseRI GAGGAG 3 cut(s) 29, 425, 896
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 6 cut(s) 18, 21, 37, 437, 682, 1007
BseYI CCCAGC 1 cut(s) 567
Bsh1236I CGCG 2 cut(s) 1361, 1521
BshFI GGCC 9 cut(s) 109, 130, 365, 510, 684, 820, 987, 1001, 1534
BshNI GGYRCC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 106, 264
BslFI GGGAC 1 cut(s) 747
BslI CCNNNNNNNGG 5 cut(s) 112, 383, 573, 691, 810
BsmAI GTCTC 2 cut(s) 770, 1516
BsmFI GGGAC 1 cut(s) 747
BsmI GAATGC 2 cut(s) 52, 1224
BsnI GGCC 9 cut(s) 109, 130, 365, 510, 684, 820, 987, 1001, 1534
Bso31I GGTCTC 1 cut(s) 1516
Bsp1286I GDGCHC 2 cut(s) 105, 906
Bsp143I GATC 3 cut(s) 5, 18, 1465
Bsp1720I GCTNAGC 1 cut(s) 212
BspACI CCGC 6 cut(s) 29, 998, 1175, 1260, 1361, 1461
BspANI GGCC 9 cut(s) 109, 130, 365, 510, 684, 820, 987, 1001, 1534
BspCNI CTCAG 3 cut(s) 550, 699, 1253
BspFNI CGCG 2 cut(s) 1361, 1521
BspLI GGNNCC 5 cut(s) 104, 268, 364, 578, 905
BspPI GGATC 2 cut(s) 13, 13
BspT107I GGYRCC 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 1516
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 5 cut(s) 110, 790, 962, 1002, 1319
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 6 cut(s) 131, 252, 880, 1040, 1446, 1529
BssMI GATC 3 cut(s) 5, 18, 1465
BssT1I CCWWGG 5 cut(s) 131, 252, 880, 1040, 1529
Bst4CI ACNGT 3 cut(s) 343, 838, 1405
Bst6I CTCTTC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 31
BstC8I GCNNGC 5 cut(s) 63, 261, 354, 378, 1142
BstDEI CTNAG 6 cut(s) 212, 537, 707, 989, 1136, 1240
BstF5I GGATG 9 cut(s) 74, 633, 819, 1036, 1083, 1268, 1331, 1383, 1447
BstFNI CGCG 2 cut(s) 1361, 1521
BstHHI GCGC 2 cut(s) 995, 1521
BstKTI GATC 3 cut(s) 8, 21, 1468
BstMAI GTCTC 2 cut(s) 770, 1516
BstMBI GATC 3 cut(s) 5, 18, 1465
BstMWI GCNNNNNNNGC 5 cut(s) 31, 34, 58, 275, 362
BstNSI RCATGY 1 cut(s) 619
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 2 cut(s) 1361, 1521
BstV1I GCAGC 6 cut(s) 18, 21, 37, 437, 682, 1007
BstV2I GAAGAC 1 cut(s) 1322
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 9 cut(s) 109, 130, 365, 510, 684, 820, 987, 1001, 1534
BtsCI GGATG 9 cut(s) 74, 633, 819, 1036, 1083, 1268, 1331, 1383, 1447
BtsIMutI CAGTG 5 cut(s) 117, 704, 1009, 1065, 1111
Cac8I GCNNGC 5 cut(s) 63, 261, 354, 378, 1142
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 2 cut(s) 995, 1521
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 363, 461
Csp6I GTAC 1 cut(s) 874
CviAII CATG 6 cut(s) 229, 616, 853, 949, 1504, 1536
CviQI GTAC 1 cut(s) 874
DdeI CTNAG 6 cut(s) 212, 537, 707, 989, 1136, 1240
DpnI GATC 3 cut(s) 7, 20, 1467
DpnII GATC 3 cut(s) 5, 18, 1465
DrdI GACNNNNNNGTC 1 cut(s) 1508
DseDI GACNNNNNNGTC 1 cut(s) 1508
EaeI YGGCCR 2 cut(s) 107, 999
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 5 cut(s) 131, 252, 880, 1040, 1529
Eco147I AGGCCT 1 cut(s) 987
Eco24I GRGCYC 1 cut(s) 906
Eco31I GGTCTC 1 cut(s) 1516
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 2 cut(s) 949, 1087
EcoO109I RGGNCCY 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 288
EcoT14I CCWWGG 5 cut(s) 131, 252, 880, 1040, 1529
EcoT38I GRGCYC 1 cut(s) 906
ErhI CCWWGG 5 cut(s) 131, 252, 880, 1040, 1529
FaeI CATG 6 cut(s) 232, 619, 856, 952, 1507, 1539
FaqI GGGAC 1 cut(s) 747
FatI CATG 6 cut(s) 228, 615, 852, 948, 1503, 1535
FauI CCCGC 1 cut(s) 1354
FauNDI CATATG 1 cut(s) 392
Fnu4HI GCNGC 9 cut(s) 26, 29, 32, 35, 426, 696, 996, 999, 1461
FokI GGATG 9 cut(s) 61, 620, 826, 1023, 1070, 1275, 1338, 1390, 1454
FriOI GRGCYC 1 cut(s) 906
Fsp4HI GCNGC 9 cut(s) 26, 29, 32, 35, 426, 696, 996, 999, 1461
FspBI CTAG 6 cut(s) 98, 132, 279, 929, 1199, 1347
GlaI GCGC 2 cut(s) 994, 1520
GluI GCNGC 9 cut(s) 26, 29, 32, 35, 426, 696, 996, 999, 1461
GsaI CCCAGC 1 cut(s) 571
HaeIII GGCC 9 cut(s) 109, 130, 365, 510, 684, 820, 987, 1001, 1534
HapII CCGG 2 cut(s) 106, 264
HhaI GCGC 2 cut(s) 995, 1521
Hin1II CATG 6 cut(s) 232, 619, 856, 952, 1507, 1539
Hin6I GCGC 2 cut(s) 993, 1519
HinP1I GCGC 2 cut(s) 993, 1519
HincII GTYRAC 3 cut(s) 601, 834, 1288
HindII GTYRAC 3 cut(s) 601, 834, 1288
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 7 cut(s) 149, 156, 387, 760, 932, 1011, 1356
HpaII CCGG 2 cut(s) 106, 264
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 4 cut(s) 601, 834, 1072, 1288
Hpy188I TCNGA 6 cut(s) 41, 490, 1010, 1127, 1388, 1516
Hpy188III TCNNGA 3 cut(s) 153, 1087, 1216
Hpy8I GTNNAC 4 cut(s) 601, 834, 1072, 1288
HpyAV CCTTC 3 cut(s) 590, 647, 814
HpyCH4III ACNGT 3 cut(s) 343, 838, 1405
HpyCH4V TGCA 8 cut(s) 337, 415, 521, 548, 771, 948, 973, 1484
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 34, 58, 275, 362
HpyF3I CTNAG 6 cut(s) 212, 537, 707, 989, 1136, 1240
Hsp92II CATG 6 cut(s) 232, 619, 856, 952, 1507, 1539
HspAI GCGC 2 cut(s) 993, 1519
Kzo9I GATC 3 cut(s) 5, 18, 1465
LmnI GCTCC 4 cut(s) 256, 266, 422, 909
Lsp1109I GCAGC 6 cut(s) 18, 21, 37, 437, 682, 1007
LweI GCATC 4 cut(s) 1092, 1147, 1368, 1432
MaeI CTAG 6 cut(s) 98, 132, 279, 929, 1199, 1347
MaeIII GTNAC 3 cut(s) 220, 1016, 1298
MalI GATC 3 cut(s) 7, 20, 1467
MboI GATC 3 cut(s) 5, 18, 1465
MboII GAAGA 6 cut(s) 101, 503, 638, 1093, 1322, 1502
MfeI CAATTG 3 cut(s) 371, 652, 1251
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 105, 906
MlyI GAGTC 6 cut(s) 150, 158, 769, 926, 1020, 1365
MmeI TCCRAC 4 cut(s) 604, 1111, 1161, 1303
MroXI GAANNNNTTC 2 cut(s) 93, 803
MseI TTAA 2 cut(s) 1118, 1187
MslI CAYNNNNRTG 4 cut(s) 121, 227, 246, 1502
MspA1I CMGCKG 3 cut(s) 31, 998, 1463
MspI CCGG 2 cut(s) 106, 264
MunI CAATTG 3 cut(s) 371, 652, 1251
Mva1269I GAATGC 2 cut(s) 52, 1224
MvnI CGCG 2 cut(s) 1361, 1521
MwoI GCNNNNNNNGC 5 cut(s) 31, 34, 58, 275, 362
NdeI CATATG 1 cut(s) 392
NdeII GATC 3 cut(s) 5, 18, 1465
NlaIII CATG 6 cut(s) 232, 619, 856, 952, 1507, 1539
NlaIV GGNNCC 5 cut(s) 104, 268, 364, 578, 905
NmeAIII GCCGAG 2 cut(s) 37, 1471
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 619
OliI CACNNNNGTG 1 cut(s) 121
PceI AGGCCT 1 cut(s) 987
PciI ACATGT 1 cut(s) 615
PctI GAATGC 2 cut(s) 52, 1224
PdmI GAANNNNTTC 2 cut(s) 93, 803
PfeI GAWTC 1 cut(s) 387
PkrI GCNGC 9 cut(s) 27, 30, 33, 36, 427, 697, 997, 1000, 1462
PleI GAGTC 6 cut(s) 150, 157, 768, 926, 1019, 1364
PpsI GAGTC 6 cut(s) 150, 157, 768, 926, 1019, 1364
PpuMI RGGWCCY 1 cut(s) 461
PscI ACATGT 1 cut(s) 615
PshBI ATTAAT 1 cut(s) 1118
Psp5II RGGWCCY 1 cut(s) 461
PspFI CCCAGC 1 cut(s) 567
PspN4I GGNNCC 5 cut(s) 104, 268, 364, 578, 905
PspPI GGNCC 2 cut(s) 363, 461
PspPPI RGGWCCY 1 cut(s) 461
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 18
RsaI GTAC 1 cut(s) 875
RsaNI GTAC 1 cut(s) 874
RseI CAYNNNNRTG 4 cut(s) 121, 227, 246, 1502
SaqAI TTAA 2 cut(s) 1118, 1187
SatI GCNGC 9 cut(s) 26, 29, 32, 35, 426, 696, 996, 999, 1461
Sau3AI GATC 3 cut(s) 5, 18, 1465
Sau96I GGNCC 2 cut(s) 363, 461
SchI GAGTC 6 cut(s) 150, 158, 769, 926, 1020, 1365
SduI GDGCHC 2 cut(s) 105, 906
SfaNI GCATC 4 cut(s) 1092, 1147, 1368, 1432
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 4 cut(s) 121, 227, 246, 1502
SpeI ACTAGT 1 cut(s) 1198
SseBI AGGCCT 1 cut(s) 987
SsiI CCGC 6 cut(s) 29, 998, 1175, 1260, 1361, 1461
SspI AATATT 1 cut(s) 1122
SspMI CTAG 6 cut(s) 98, 132, 279, 929, 1199, 1347
StuI AGGCCT 1 cut(s) 987
StyI CCWWGG 5 cut(s) 131, 252, 880, 1040, 1529
TaaI ACNGT 3 cut(s) 343, 838, 1405
TauI GCSGC 3 cut(s) 31, 1001, 1463
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 2 cut(s) 1118, 1187
Tru9I TTAA 2 cut(s) 1118, 1187
TscAI CASTG 5 cut(s) 117, 711, 1009, 1065, 1111
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 6 cut(s) 25, 31, 34, 425, 695, 995
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 4 cut(s) 168, 622, 965, 1503
TspGWI ACGGA 3 cut(s) 184, 1089, 1198
TspRI CASTG 5 cut(s) 117, 711, 1009, 1065, 1111
VpaK11BI GGWCC 1 cut(s) 461
VspI ATTAAT 1 cut(s) 1118
XapI RAATTY 2 cut(s) 288, 1052
XceI RCATGY 1 cut(s) 619
XcmI CCANNNNNNNNNTGG 2 cut(s) 117, 859
XmaJI CCTAGG 1 cut(s) 131
XmnI GAANNNNTTC 2 cut(s) 93, 803
XspI CTAG 6 cut(s) 98, 132, 279, 929, 1199, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.