FvH4_6g37810

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
29766089 .. 29769007
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37810.t1

Sequence Viewer

Length: 1482 bp
ATGGAGAGCCAGAAAGAGATTACGAGTCCTGACTTGTCATCATCCGCAGCAGTTGAAAAGTTTCTCGAGCAAAAAGAAGTGGCATTCAAATGGTTGCCTAGGCTTGTGGCATGGGAGTCGGGGATCCTATGGAGTTTATCAACTTCATCAATCATTATATCTATAGCCAACTATATGCTCAGCTTTGTCACTCTCATGTTTTGTGGCCATTTGAGTCCTTTGGAGCTTGCCGGAGCCTCCATTGCTTGCGTGGGAATTCAAGGCCTTGCTTATGGCATCATGTTGGGGATGGCAAGTGCTGTGCAAACAGTGTGTGGACAAGCATATGGAGCCAAACACTTGGGAGCAATGGGGATCATATGCCAAAGAGCAATCATCTTGCATTTGGGAGCAGCAGTCCTCCTTACATCTCTGTATTGGTGGTCAGGACCAATGCTTATAGCTATTGGACAATCACATATAATAGCAGAGAAGGGTCAAATATTTTCCAGGGGTTTAATCCTTCAACTCTATGCATTTGCCATAAACTGTCCCCAACAAAGGTTCCTTCAAGCACAGAACATAGTAAAACCTTTAGCATTCATGTCTATCGGAATTTTGCTTCTTCACACTCTCCTCACTTGGTTGGTGGTTGATGTTGTGAAATTTGGGCTATTGGGAGCTGCTCTTAGTCTCAGCTTTTCTTGGTGGTTGCTTGTGATTGCATCTGGGGTTTACATTGTTCTGAGCCCCAGGTGCAAGGAGACTTGGACTGGCTTCTCTAGCAAAGCCTTCAGGGGAGTTTGGCCGTATTTTAAGTTTACTGTTGCCTCTGCTTTCATGCTTTGTTTGGAGATATGGTACAGCCAAGGGCTAGTGCTTCTGTCAGGGCTCCTCCCCAACCCTACAATCTCCCTAGACTCCATTTCTATTTGCATGAATTACTTGAACTGGGATATAACATTTATGTTAGGCCTAGGTGCAGCTGCCAGTGTTCGAGTCGGTAATGAACTCGGAGCCGGTCATCCAAAGGTGGCCAGATTCTCAGTGTTTGTGGTGAATGTAACCAGCGTCCTGATTAGTGTGATCTTCAGTGTGATTGTACTATTCCTCCGAGTTCAGTTAAGCAAGCTATTTGCAAGCGATGCAGAGGTTATCAAGGCAGTGTCTGATTTAACTCCATTGCTCGCCATCTCTATTTTTTTAAATGGAATTCAACCTATACTCTCAGGTGTGGCAATTGGAAGTGGATGGCAAGGAGTTGTGGCTTATGTTAACTTGTTTTGTTACTATTTCATTGGTCTTCCAATTGGGTGTGTTCTTGGCTTTAAACTTAGAATGGGGGTGGCAGGTCTTTGGTGGGGGATGATTATTGGAGTTTTCTTACAAACAGTAGCTCTAGTTGTCCTCACGGCCAGAACAAATTGGAATGCTCAGGTTGAAAAAGCAGCTGAGCGCTTGAAGACATCTGCAAGTGAAGAAAACTGTACCTTACCACTATAG

Protein Analysis

494

Amino Acids

53.5

Weight (kDa)

8.8

Isoelectric Point (pI)

26.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 51 - 209 1.2e-24 MatE
MatE PF01554 271 - 431 5.5e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1319
AciI CCGC 1 cut(s) 45
AclWI GGATC 3 cut(s) 118, 131, 362
AcoI YGGCCR 4 cut(s) 205, 785, 1014, 1392
AcsI RAATTY 4 cut(s) 255, 594, 644, 1191
AcuI CTGAAG 2 cut(s) 757, 1054
AfaI GTAC 3 cut(s) 842, 1083, 1468
AfeI AGCGCT 1 cut(s) 1436
AfiI CCNNNNNNNGG 1 cut(s) 540
AgsI TTSAA 9 cut(s) 56, 88, 260, 506, 551, 928, 1196, 1421, 1441
AjnI CCWGG 2 cut(s) 488, 731
AluBI AGCT 9 cut(s) 183, 226, 443, 662, 678, 965, 1111, 1376, 1430
AluI AGCT 9 cut(s) 183, 226, 443, 662, 678, 965, 1111, 1376, 1430
Alw26I GTCTC 2 cut(s) 677, 737
AlwI GGATC 3 cut(s) 118, 131, 362
AlwNI CAGNNNCTG 1 cut(s) 1148
Ama87I CYCGRG 1 cut(s) 65
Aor51HI AGCGCT 1 cut(s) 1436
AoxI GGCC 6 cut(s) 205, 262, 785, 952, 1014, 1392
ApeKI GCWGC 6 cut(s) 47, 392, 662, 962, 965, 1427
ApoI RAATTY 4 cut(s) 255, 594, 644, 1191
Asp700I GAANNNNTTC 1 cut(s) 60
AspA2I CCTAGG 2 cut(s) 98, 955
AspLEI GCGC 1 cut(s) 1437
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 1048
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 1 cut(s) 428
AvrII CCTAGG 2 cut(s) 98, 955
BalI TGGCCA 2 cut(s) 207, 1016
BamHI GGATCC 1 cut(s) 123
BanII GRGCYC 2 cut(s) 731, 873
BbsI GAAGAC 2 cut(s) 1274, 1448
BbvI GCAGC 6 cut(s) 59, 404, 649, 952, 974, 1439
BccI CCATC 3 cut(s) 283, 1178, 1224
BceAI ACGGC 2 cut(s) 772, 1407
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 2 cut(s) 490, 733
BcoDI GTCTC 2 cut(s) 677, 737
BfaI CTAG 6 cut(s) 99, 762, 854, 896, 956, 1379
BfmI CTRYAG 2 cut(s) 162, 1478
BfoI RGCGCY 1 cut(s) 1438
BfuAI ACCTGC 1 cut(s) 1319
BisI GCNGC 6 cut(s) 48, 393, 663, 963, 966, 1428
BlnI CCTAGG 2 cut(s) 98, 955
BlpI GCTNAGC 2 cut(s) 179, 1431
BlsI GCNGC 6 cut(s) 49, 394, 664, 964, 967, 1429
Bme1390I CCNGG 2 cut(s) 490, 733
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 6 cut(s) 125, 235, 331, 545, 872, 997
BmrFI CCNGG 2 cut(s) 490, 733
BmrI ACTGGG 1 cut(s) 940
BmsI GCATC 3 cut(s) 285, 713, 1114
BmuI ACTGGG 1 cut(s) 940
BpiI GAAGAC 2 cut(s) 1274, 1448
Bpu10I CCTNAGC 1 cut(s) 1413
Bpu1102I GCTNAGC 2 cut(s) 179, 1431
BsaJI CCNNGG 5 cut(s) 98, 489, 731, 847, 955
BsaXI ACNNNNNCTCC 6 cut(s) 381, 411, 824, 854, 1074, 1104
Bsc4I CCNNNNNNNGG 1 cut(s) 540
Bse118I RCCGGY 1 cut(s) 998
Bse1I ACTGG 3 cut(s) 757, 935, 969
Bse3DI GCAATG 3 cut(s) 240, 354, 1160
BseBI CCWGG 2 cut(s) 490, 733
BseDI CCNNGG 5 cut(s) 98, 489, 731, 847, 955
BseGI GGATG 5 cut(s) 41, 294, 1003, 1235, 1350
BseLI CCNNNNNNNGG 1 cut(s) 540
BseMI GCAATG 3 cut(s) 240, 354, 1160
BseMII CTCAG 7 cut(s) 193, 688, 716, 1038, 1221, 1422, 1427
BseNI ACTGG 3 cut(s) 757, 935, 969
BseRI GAGGAG 2 cut(s) 605, 863
BseXI GCAGC 6 cut(s) 59, 404, 649, 952, 974, 1439
BsgI GTGCAG 1 cut(s) 981
BshFI GGCC 6 cut(s) 207, 264, 787, 954, 1016, 1394
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 2 cut(s) 231, 999
BslFI GGGAC 1 cut(s) 516
BslI CCNNNNNNNGG 1 cut(s) 540
BsmAI GTCTC 2 cut(s) 677, 737
BsmFI GGGAC 1 cut(s) 516
BsmI GAATGC 3 cut(s) 83, 578, 1414
BsnI GGCC 6 cut(s) 207, 264, 787, 954, 1016, 1394
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 731, 873
Bsp143I GATC 3 cut(s) 123, 354, 1065
Bsp1720I GCTNAGC 2 cut(s) 179, 1431
BspACI CCGC 1 cut(s) 45
BspANI GGCC 6 cut(s) 207, 264, 787, 954, 1016, 1394
BspCNI CTCAG 7 cut(s) 192, 687, 717, 1037, 1220, 1423, 1426
BspLI GGNNCC 6 cut(s) 125, 235, 331, 545, 872, 997
BspMI ACCTGC 1 cut(s) 1319
BspPI GGATC 3 cut(s) 118, 131, 362
BsrDI GCAATG 3 cut(s) 240, 354, 1160
BsrFI RCCGGY 1 cut(s) 998
BsrI ACTGG 3 cut(s) 757, 935, 969
BssAI RCCGGY 1 cut(s) 998
BssECI CCNNGG 5 cut(s) 98, 489, 731, 847, 955
BssMI GATC 3 cut(s) 123, 354, 1065
BssT1I CCWWGG 3 cut(s) 98, 847, 955
Bst2UI CCWGG 2 cut(s) 490, 733
Bst4CI ACNGT 5 cut(s) 310, 530, 805, 1372, 1466
BstAPI GCANNNNNTGC 1 cut(s) 1124
BstC8I GCNNGC 5 cut(s) 228, 247, 1109, 1120, 1167
BstDEI CTNAG 9 cut(s) 179, 668, 674, 725, 1024, 1207, 1313, 1413, 1431
BstF5I GGATG 5 cut(s) 41, 294, 1003, 1235, 1350
BstH2I RGCGCY 1 cut(s) 1438
BstHHI GCGC 1 cut(s) 1437
BstKTI GATC 3 cut(s) 126, 357, 1068
BstMAI GTCTC 2 cut(s) 677, 737
BstMBI GATC 3 cut(s) 123, 354, 1065
BstMWI GCNNNNNNNGC 5 cut(s) 242, 329, 735, 762, 1124
BstNI CCWGG 2 cut(s) 490, 733
BstSCI CCNGG 2 cut(s) 488, 731
BstSFI CTRYAG 2 cut(s) 162, 1478
BstV1I GCAGC 6 cut(s) 59, 404, 649, 952, 974, 1439
BstV2I GAAGAC 2 cut(s) 1274, 1448
BstX2I RGATCY 1 cut(s) 123
BstXI CCANNNNNNTGG 1 cut(s) 340
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 6 cut(s) 207, 264, 787, 954, 1016, 1394
BtgZI GCGATG 1 cut(s) 1137
BtsCI GGATG 5 cut(s) 41, 294, 1003, 1235, 1350
BtsI GCAGTG 1 cut(s) 1149
BtsIMutI CAGTG 5 cut(s) 315, 976, 1032, 1078, 1149
BveI ACCTGC 1 cut(s) 1319
Cac8I GCNNGC 5 cut(s) 228, 247, 1109, 1120, 1167
CaiI CAGNNNCTG 1 cut(s) 1148
CfoI GCGC 1 cut(s) 1437
Cfr10I RCCGGY 1 cut(s) 998
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 1 cut(s) 1039
Csp6I GTAC 3 cut(s) 841, 1082, 1467
CviAII CATG 6 cut(s) 111, 196, 280, 583, 820, 916
CviQI GTAC 3 cut(s) 841, 1082, 1467
DdeI CTNAG 9 cut(s) 179, 668, 674, 725, 1024, 1207, 1313, 1413, 1431
DpnI GATC 3 cut(s) 125, 356, 1067
DpnII GATC 3 cut(s) 123, 354, 1065
DraI TTTAAA 2 cut(s) 1185, 1309
EaeI YGGCCR 4 cut(s) 205, 785, 1014, 1392
Eco130I CCWWGG 3 cut(s) 98, 847, 955
Eco147I AGGCCT 2 cut(s) 264, 954
Eco24I GRGCYC 2 cut(s) 731, 873
Eco47I GGWCC 1 cut(s) 428
Eco47III AGCGCT 1 cut(s) 1436
Eco57I CTGAAG 2 cut(s) 757, 1054
Eco88I CYCGRG 1 cut(s) 65
EcoRI GAATTC 2 cut(s) 255, 1191
EcoRII CCWGG 2 cut(s) 488, 731
EcoT14I CCWWGG 3 cut(s) 98, 847, 955
EcoT22I ATGCAT 1 cut(s) 517
EcoT38I GRGCYC 2 cut(s) 731, 873
ErhI CCWWGG 3 cut(s) 98, 847, 955
FaeI CATG 6 cut(s) 114, 199, 283, 586, 823, 919
FaqI GGGAC 1 cut(s) 516
FatI CATG 6 cut(s) 110, 195, 279, 582, 819, 915
FauNDI CATATG 2 cut(s) 325, 359
Fnu4HI GCNGC 6 cut(s) 48, 393, 663, 963, 966, 1428
FokI GGATG 5 cut(s) 28, 301, 990, 1242, 1357
FriOI GRGCYC 2 cut(s) 731, 873
Fsp4HI GCNGC 6 cut(s) 48, 393, 663, 963, 966, 1428
FspBI CTAG 6 cut(s) 99, 762, 854, 896, 956, 1379
GlaI GCGC 1 cut(s) 1436
GluI GCNGC 6 cut(s) 48, 393, 663, 963, 966, 1428
HaeII RGCGCY 1 cut(s) 1438
HaeIII GGCC 6 cut(s) 207, 264, 787, 954, 1016, 1394
HapII CCGG 2 cut(s) 231, 999
HgaI GACGC 1 cut(s) 1039
HhaI GCGC 1 cut(s) 1437
Hin1II CATG 6 cut(s) 114, 199, 283, 586, 823, 919
Hin6I GCGC 1 cut(s) 1435
HinP1I GCGC 1 cut(s) 1435
HincII GTYRAC 1 cut(s) 1255
HindII GTYRAC 1 cut(s) 1255
HinfI GANTC 6 cut(s) 25, 116, 214, 899, 978, 1020
HpaI GTTAAC 1 cut(s) 1255
HpaII CCGG 2 cut(s) 231, 999
HphI GGTGA 1 cut(s) 1048
Hpy166II GTNNAC 4 cut(s) 317, 715, 801, 1255
Hpy188I TCNGA 5 cut(s) 593, 726, 995, 1094, 1150
Hpy188III TCNNGA 4 cut(s) 29, 65, 426, 1054
Hpy8I GTNNAC 4 cut(s) 317, 715, 801, 1255
HpyAV CCTTC 4 cut(s) 466, 512, 557, 781
HpyCH4III ACNGT 5 cut(s) 310, 530, 805, 1372, 1466
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 329, 735, 762, 1124
HpyF3I CTNAG 9 cut(s) 179, 668, 674, 725, 1024, 1207, 1313, 1413, 1431
Hsp92II CATG 6 cut(s) 114, 199, 283, 586, 823, 919
HspAI GCGC 1 cut(s) 1435
KspAI GTTAAC 1 cut(s) 1255
Kzo9I GATC 3 cut(s) 123, 354, 1065
LmnI GCTCC 8 cut(s) 223, 233, 329, 344, 389, 659, 876, 995
Lsp1109I GCAGC 6 cut(s) 59, 404, 649, 952, 974, 1439
LweI GCATC 3 cut(s) 285, 713, 1114
MaeI CTAG 6 cut(s) 99, 762, 854, 896, 956, 1379
MaeIII GTNAC 3 cut(s) 187, 1042, 1265
MalI GATC 3 cut(s) 125, 356, 1067
MboI GATC 3 cut(s) 123, 354, 1065
MboII GAAGA 5 cut(s) 596, 1060, 1274, 1453, 1469
MfeI CAATTG 2 cut(s) 1218, 1287
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 731, 873
MlsI TGGCCA 2 cut(s) 207, 1016
MluCI AATT 8 cut(s) 255, 594, 644, 919, 1191, 1218, 1287, 1402
MluNI TGGCCA 2 cut(s) 207, 1016
MlyI GAGTC 5 cut(s) 34, 125, 223, 893, 987
MnlI CCTC 8 cut(s) 247, 410, 626, 820, 884, 1100, 1123, 1397
Mox20I TGGCCA 2 cut(s) 207, 1016
Mph1103I ATGCAT 1 cut(s) 517
MroXI GAANNNNTTC 1 cut(s) 60
MscI TGGCCA 2 cut(s) 207, 1016
MseI TTAA 7 cut(s) 497, 795, 1103, 1154, 1184, 1254, 1308
MslI CAYNNNNRTG 2 cut(s) 88, 194
Msp20I TGGCCA 2 cut(s) 207, 1016
MspA1I CMGCKG 2 cut(s) 965, 1430
MspI CCGG 2 cut(s) 231, 999
MspR9I CCNGG 2 cut(s) 490, 733
MunI CAATTG 2 cut(s) 1218, 1287
Mva1269I GAATGC 3 cut(s) 83, 578, 1414
MvaI CCWGG 2 cut(s) 490, 733
MwoI GCNNNNNNNGC 5 cut(s) 242, 329, 735, 762, 1124
NdeI CATATG 2 cut(s) 325, 359
NdeII GATC 3 cut(s) 123, 354, 1065
NlaIII CATG 6 cut(s) 114, 199, 283, 586, 823, 919
NlaIV GGNNCC 6 cut(s) 125, 235, 331, 545, 872, 997
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 517
PaeR7I CTCGAG 1 cut(s) 65
PceI AGGCCT 2 cut(s) 264, 954
PctI GAATGC 3 cut(s) 83, 578, 1414
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 1020
PkrI GCNGC 6 cut(s) 49, 394, 664, 964, 967, 1429
PleI GAGTC 5 cut(s) 33, 124, 222, 893, 986
PpsI GAGTC 5 cut(s) 33, 124, 222, 893, 986
Psp6I CCWGG 2 cut(s) 488, 731
PspGI CCWGG 2 cut(s) 488, 731
PspN4I GGNNCC 6 cut(s) 125, 235, 331, 545, 872, 997
PspPI GGNCC 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 1148
PsuI RGATCY 1 cut(s) 123
PvuII CAGCTG 2 cut(s) 965, 1430
RsaI GTAC 3 cut(s) 842, 1083, 1468
RsaNI GTAC 3 cut(s) 841, 1082, 1467
RseI CAYNNNNRTG 2 cut(s) 88, 194
SaqAI TTAA 7 cut(s) 497, 795, 1103, 1154, 1184, 1254, 1308
SatI GCNGC 6 cut(s) 48, 393, 663, 963, 966, 1428
Sau3AI GATC 3 cut(s) 123, 354, 1065
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 5 cut(s) 34, 125, 223, 893, 987
ScrFI CCNGG 2 cut(s) 490, 733
SduI GDGCHC 2 cut(s) 731, 873
SfaNI GCATC 3 cut(s) 285, 713, 1114
SfcI CTRYAG 2 cut(s) 162, 1478
Sfr274I CTCGAG 1 cut(s) 65
SinI GGWCC 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 65
SmiMI CAYNNNNRTG 2 cut(s) 88, 194
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 8 cut(s) 255, 594, 644, 919, 1191, 1218, 1287, 1402
SseBI AGGCCT 2 cut(s) 264, 954
SsiI CCGC 1 cut(s) 45
SspI AATATT 1 cut(s) 483
SspMI CTAG 6 cut(s) 99, 762, 854, 896, 956, 1379
StuI AGGCCT 2 cut(s) 264, 954
StyD4I CCNGG 2 cut(s) 488, 731
StyI CCWWGG 3 cut(s) 98, 847, 955
TaaI ACNGT 5 cut(s) 310, 530, 805, 1372, 1466
TaqI TCGA 2 cut(s) 66, 976
TasI AATT 8 cut(s) 255, 594, 644, 919, 1191, 1218, 1287, 1402
TatI WGTACW 1 cut(s) 1081
TfiI GAWTC 1 cut(s) 1020
Tru1I TTAA 7 cut(s) 497, 795, 1103, 1154, 1184, 1254, 1308
Tru9I TTAA 7 cut(s) 497, 795, 1103, 1154, 1184, 1254, 1308
TscAI CASTG 5 cut(s) 315, 976, 1032, 1078, 1149
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 6 cut(s) 47, 392, 662, 962, 965, 1427
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 6 cut(s) 135, 571, 808, 932, 1002, 1264
TspRI CASTG 5 cut(s) 315, 976, 1032, 1078, 1149
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 4 cut(s) 255, 594, 644, 1191
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 65
XmaJI CCTAGG 2 cut(s) 98, 955
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 6 cut(s) 99, 762, 854, 896, 956, 1379
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.