Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Forward (+)

10190077 .. 10192597

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g12460.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGGATCGGTGGAGGAGATCCAGCAGCCGTTGCTGCTCGGATTTGACACGCATTCTCAGCTTGCTGATTTGTCATCCCTTGCTGTTGAAGAGTTTCTAGGGCACCGGCCAGTGTCACTCCGATGGTGGCCTAGGCTGGTGGTTTGGGAGTCAAGACTCCTATGGATTTTATCTGGTTCATCTATTATTGTTTCCGTATTCAACTATATGCTCAGCTTTGTCACCCTCATGTTTTGTGGGCATTTGAGTGCCTTGGAGCTTGCCGGAGCCTCTATCGCTAGTGTGGGAATTCAGGGTCTGGCTTATGGGATTATGTTGGGAATGGCAAGTGCTGTGCAAACTGTGTGTGGGCAAGCATATGGGGCCAAGCAATTGCCAGCAATGGGAATCATATGCCAAAGAGCAATCATCTTGCACTTGGGAGCAGCAATCCTCCTCTCATTTGTGTATTGGTGGTCAGGTCCTATCCTCGTAGCCATTGGGCAATCAGAAGAAATAGCAGAGCAAGGCCAAATCTTTGCAAGAGGAATTATTCCTCAGCTTTTTGCATTTGCCATAAACTGCCCCCAGCAGAGGTTCCTTCAAGCTCAAAACATAGTCAACCCCTTGGCTTACATGTCGGTTGGAGTTTTCATCCTTCACATTCTTCTCAATTGGGTGGTGGTTTTTGTTGTGGATTATGGCCTAACTGGGGCTGCTCTTACACTAAGCTTCTCTTGGTGGCTTCTTGTCATTATATATGGGCTTTACATTCTTTTGAGTCCCAAGTGCAAGGAGACTTGGACTGGCTTCTCTTGGAAAGCCTTCAAAGGGATGTGGCCTTATTTCAAGTTGACTGTTGCCTCTGCTATTATGCTCTGTGTCCGAGTCAGTAACGAGTTAGGGGCTGGTCATCCAAGGGTGGCGAAATTTTCAGTGTTTGTAGTGAACGGAACTAGCATCCTGATTAGTATAATCTTCAGTGCGATTATATTAATATTCCGAGTTGGACTTAGCAAGCTATTTACAAGTGATGCTGATGTTGTTGAGGCGGTGTTGGATTTAACTCCATTGCTAGTTGTTTCCGTTTTCTTGAATGGCATTCAACCAATACTCTCAGGTGTGGCAATTGGAAGCGGATGGCAAGATGTGGTGGCTTATGTCAACCTCGTTTGTTACTATATAATTGGTTTTCCAGTTGGATGTCTTCTTGGCTTCAAAGCTAGTATGGGAGTCGCGGGGATTTGGTGGGGGATGCTTATCGGAGTTTTTTTACAAACAGTAGTGCTAATTGTTCTCACTGCCAGAACAAATTGGGATGCCGAGGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

438

Amino Acids

47.71

Weight (kDa)

6.58

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	102
AccII	CGCG	1 cut(s)	1217
AciI	CCGC	3 cut(s)	1031, 1116, 1217
AclWI	GGATC	2 cut(s)	13, 13
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	2 cut(s)	288, 908
AcuI	CTGAAG	1 cut(s)	943
AfiI	CCNNNNNNNGG	4 cut(s)	383, 573, 691, 810
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	8 cut(s)	89, 202, 584, 808, 829, 1075, 1085, 1198
AluBI	AGCT	8 cut(s)	61, 216, 259, 541, 587, 711, 1000, 1202
AluI	AGCT	8 cut(s)	61, 216, 259, 541, 587, 711, 1000, 1202
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	2 cut(s)	13, 13
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	6 cut(s)	107, 128, 363, 508, 682, 818
ApeKI	GCWGC	4 cut(s)	25, 34, 425, 695
ApoI	RAATTY	2 cut(s)	288, 908
AseI	ATTAAT	1 cut(s)	974
Asp700I	GAANNNNTTC	2 cut(s)	93, 803
AspA2I	CCTAGG	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	363, 461
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	461
AvrII	CCTAGG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	1178
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	21, 37, 437, 682
BccI	CCATC	2 cut(s)	117, 1113
BceAI	ACGGC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	6 cut(s)	98, 132, 279, 936, 1055, 1203
BisI	GCNGC	4 cut(s)	26, 35, 426, 696
BlnI	CCTAGG	1 cut(s)	131
BlpI	GCTNAGC	1 cut(s)	212
BlsI	GCNGC	4 cut(s)	27, 36, 427, 697
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	363, 461
BmiI	GGNNCC	4 cut(s)	104, 268, 364, 578
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	4 cut(s)	948, 1003, 1224, 1288
BmuI	ACTGGG	1 cut(s)	699
BpiI	GAAGAC	1 cut(s)	1178
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	1238
BsaJI	CCNNGG	5 cut(s)	131, 252, 606, 896, 1302
Bsc4I	CCNNNNNNNGG	4 cut(s)	383, 573, 691, 810
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	4 cut(s)	110, 694, 790, 1175
Bse3DI	GCAATG	2 cut(s)	387, 1049
Bse8I	GATNNNNATC	1 cut(s)	1238
BseDI	CCNNGG	5 cut(s)	131, 252, 606, 896, 1302
BseGI	GGATG	9 cut(s)	74, 633, 819, 892, 939, 1124, 1187, 1239, 1303
BseJI	GATNNNNATC	1 cut(s)	1238
BseLI	CCNNNNNNNGG	4 cut(s)	383, 573, 691, 810
BseMI	GCAATG	2 cut(s)	387, 1049
BseMII	CTCAG	4 cut(s)	71, 226, 551, 1110
BseNI	ACTGG	4 cut(s)	110, 694, 790, 1175
BseRI	GAGGAG	2 cut(s)	29, 425
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	4 cut(s)	21, 37, 437, 682
BseYI	CCCAGC	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	1217
BshFI	GGCC	6 cut(s)	109, 130, 365, 510, 684, 820
BshNI	GGYRCC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	106, 264
BslFI	GGGAC	1 cut(s)	747
BslI	CCNNNNNNNGG	4 cut(s)	383, 573, 691, 810
BsmAI	GTCTC	1 cut(s)	770
BsmFI	GGGAC	1 cut(s)	747
BsmI	GAATGC	2 cut(s)	52, 1080
BsnI	GGCC	6 cut(s)	109, 130, 365, 510, 684, 820
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	5, 18
Bsp1720I	GCTNAGC	1 cut(s)	212
BspACI	CCGC	3 cut(s)	1031, 1116, 1217
BspANI	GGCC	6 cut(s)	109, 130, 365, 510, 684, 820
BspCNI	CTCAG	4 cut(s)	70, 225, 550, 1109
BspFNI	CGCG	1 cut(s)	1217
BspLI	GGNNCC	4 cut(s)	104, 268, 364, 578
BspPI	GGATC	2 cut(s)	13, 13
BspT107I	GGYRCC	1 cut(s)	102
BsrDI	GCAATG	2 cut(s)	387, 1049
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	4 cut(s)	110, 694, 790, 1175
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	5 cut(s)	131, 252, 606, 896, 1302
BssMI	GATC	2 cut(s)	5, 18
BssT1I	CCWWGG	4 cut(s)	131, 252, 606, 896
Bst4CI	ACNGT	3 cut(s)	343, 838, 1261
Bst6I	CTCTTC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstC8I	GCNNGC	5 cut(s)	63, 261, 354, 378, 998
BstDEI	CTNAG	6 cut(s)	57, 212, 537, 707, 992, 1096
BstF5I	GGATG	9 cut(s)	74, 633, 819, 892, 939, 1124, 1187, 1239, 1303
BstFNI	CGCG	1 cut(s)	1217
BstKTI	GATC	2 cut(s)	8, 21
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	2 cut(s)	5, 18
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 34, 58, 275, 362
BstNSI	RCATGY	1 cut(s)	619
BstSLI	GKGCMC	1 cut(s)	105
BstUI	CGCG	1 cut(s)	1217
BstV1I	GCAGC	4 cut(s)	21, 37, 437, 682
BstV2I	GAAGAC	1 cut(s)	1178
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	6 cut(s)	109, 130, 365, 510, 684, 820
BtsCI	GGATG	9 cut(s)	74, 633, 819, 892, 939, 1124, 1187, 1239, 1303
BtsI	GCAGTG	1 cut(s)	1278
BtsIMutI	CAGTG	4 cut(s)	117, 921, 967, 1278
Cac8I	GCNNGC	5 cut(s)	63, 261, 354, 378, 998
CaiI	CAGNNNCTG	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	363, 461
CviAII	CATG	2 cut(s)	229, 616
DdeI	CTNAG	6 cut(s)	57, 212, 537, 707, 992, 1096
DpnI	GATC	2 cut(s)	7, 20
DpnII	GATC	2 cut(s)	5, 18
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	4 cut(s)	131, 252, 606, 896
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	943
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	288
EcoT14I	CCWWGG	4 cut(s)	131, 252, 606, 896
ErhI	CCWWGG	4 cut(s)	131, 252, 606, 896
FaeI	CATG	2 cut(s)	232, 619
FalI	AAGNNNNNCTT	2 cut(s)	700, 732
FaqI	GGGAC	1 cut(s)	747
FatI	CATG	2 cut(s)	228, 615
FauI	CCCGC	1 cut(s)	1210
FauNDI	CATATG	2 cut(s)	358, 392
Fnu4HI	GCNGC	4 cut(s)	26, 35, 426, 696
FokI	GGATG	9 cut(s)	61, 620, 826, 879, 926, 1131, 1194, 1246, 1310
Fsp4HI	GCNGC	4 cut(s)	26, 35, 426, 696
FspBI	CTAG	6 cut(s)	98, 132, 279, 936, 1055, 1203
GluI	GCNGC	4 cut(s)	26, 35, 426, 696
GsaI	CCCAGC	1 cut(s)	571
HaeIII	GGCC	6 cut(s)	109, 130, 365, 510, 684, 820
HapII	CCGG	2 cut(s)	106, 264
Hin1II	CATG	2 cut(s)	232, 619
HincII	GTYRAC	3 cut(s)	601, 834, 1144
HindII	GTYRAC	3 cut(s)	601, 834, 1144
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	6 cut(s)	149, 156, 387, 760, 867, 1212
HpaII	CCGG	2 cut(s)	106, 264
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	4 cut(s)	601, 834, 928, 1144
Hpy188I	TCNGA	6 cut(s)	41, 122, 490, 866, 983, 1244
Hpy188III	TCNNGA	3 cut(s)	153, 943, 1072
Hpy8I	GTNNAC	4 cut(s)	601, 834, 928, 1144
HpyAV	CCTTC	3 cut(s)	590, 647, 814
HpyCH4III	ACNGT	3 cut(s)	343, 838, 1261
HpyCH4V	TGCA	5 cut(s)	337, 415, 521, 548, 771
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 34, 58, 275, 362
HpyF3I	CTNAG	6 cut(s)	57, 212, 537, 707, 992, 1096
Hsp92II	CATG	2 cut(s)	232, 619
Kzo9I	GATC	2 cut(s)	5, 18
LmnI	GCTCC	3 cut(s)	256, 266, 422
Lsp1109I	GCAGC	4 cut(s)	21, 37, 437, 682
LweI	GCATC	4 cut(s)	948, 1003, 1224, 1288
MaeI	CTAG	6 cut(s)	98, 132, 279, 936, 1055, 1203
MaeIII	GTNAC	4 cut(s)	114, 220, 872, 1154
MalI	GATC	2 cut(s)	7, 20
MboI	GATC	2 cut(s)	5, 18
MboII	GAAGA	5 cut(s)	101, 503, 638, 949, 1178
MfeI	CAATTG	3 cut(s)	371, 652, 1107
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	9 cut(s)	288, 371, 528, 652, 908, 1107, 1164, 1269, 1291
MlyI	GAGTC	5 cut(s)	150, 158, 769, 876, 1221
MmeI	TCCRAC	4 cut(s)	604, 967, 1017, 1159
MroXI	GAANNNNTTC	2 cut(s)	93, 803
MseI	TTAA	3 cut(s)	974, 1043, 1312
MslI	CAYNNNNRTG	3 cut(s)	121, 227, 246
MspI	CCGG	2 cut(s)	106, 264
MunI	CAATTG	3 cut(s)	371, 652, 1107
Mva1269I	GAATGC	2 cut(s)	52, 1080
MvnI	CGCG	1 cut(s)	1217
MwoI	GCNNNNNNNGC	5 cut(s)	31, 34, 58, 275, 362
NdeI	CATATG	2 cut(s)	358, 392
NdeII	GATC	2 cut(s)	5, 18
NlaIII	CATG	2 cut(s)	232, 619
NlaIV	GGNNCC	4 cut(s)	104, 268, 364, 578
NmuCI	GTSAC	2 cut(s)	114, 220
NspI	RCATGY	1 cut(s)	619
PciI	ACATGT	1 cut(s)	615
PctI	GAATGC	2 cut(s)	52, 1080
PdmI	GAANNNNTTC	2 cut(s)	93, 803
PfeI	GAWTC	1 cut(s)	387
PkrI	GCNGC	4 cut(s)	27, 36, 427, 697
PleI	GAGTC	5 cut(s)	150, 157, 768, 875, 1220
PpsI	GAGTC	5 cut(s)	150, 157, 768, 875, 1220
PpuMI	RGGWCCY	1 cut(s)	461
PscI	ACATGT	1 cut(s)	615
PshBI	ATTAAT	1 cut(s)	974
Psp5II	RGGWCCY	1 cut(s)	461
PspFI	CCCAGC	1 cut(s)	567
PspN4I	GGNNCC	4 cut(s)	104, 268, 364, 578
PspPI	GGNCC	2 cut(s)	363, 461
PspPPI	RGGWCCY	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	18
RseI	CAYNNNNRTG	3 cut(s)	121, 227, 246
SaqAI	TTAA	3 cut(s)	974, 1043, 1312
SatI	GCNGC	4 cut(s)	26, 35, 426, 696
Sau3AI	GATC	2 cut(s)	5, 18
Sau96I	GGNCC	2 cut(s)	363, 461
SchI	GAGTC	5 cut(s)	150, 158, 769, 876, 1221
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	4 cut(s)	948, 1003, 1224, 1288
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	3 cut(s)	121, 227, 246
Sse9I	AATT	9 cut(s)	288, 371, 528, 652, 908, 1107, 1164, 1269, 1291
SsiI	CCGC	3 cut(s)	1031, 1116, 1217
SspI	AATATT	1 cut(s)	978
SspMI	CTAG	6 cut(s)	98, 132, 279, 936, 1055, 1203
StyI	CCWWGG	4 cut(s)	131, 252, 606, 896
TaaI	ACNGT	3 cut(s)	343, 838, 1261
TasI	AATT	9 cut(s)	288, 371, 528, 652, 908, 1107, 1164, 1269, 1291
TfiI	GAWTC	1 cut(s)	387
Tru1I	TTAA	3 cut(s)	974, 1043, 1312
Tru9I	TTAA	3 cut(s)	974, 1043, 1312
TscAI	CASTG	4 cut(s)	117, 921, 967, 1285
TseFI	GTSAC	2 cut(s)	114, 220
TseI	GCWGC	4 cut(s)	25, 34, 425, 695
Tsp45I	GTSAC	2 cut(s)	114, 220
TspDTI	ATGAA	2 cut(s)	168, 622
TspGWI	ACGGA	3 cut(s)	184, 945, 1054
TspRI	CASTG	4 cut(s)	117, 921, 967, 1285
VpaK11BI	GGWCC	1 cut(s)	461
VspI	ATTAAT	1 cut(s)	974
XapI	RAATTY	2 cut(s)	288, 908
XceI	RCATGY	1 cut(s)	619
XmaJI	CCTAGG	1 cut(s)	131
XmnI	GAANNNNTTC	2 cut(s)	93, 803
XspI	CTAG	6 cut(s)	98, 132, 279, 936, 1055, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.