Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Forward (+)

70438626 .. 70441484

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG483600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCAAGTGCTGTGCAAACAGTATGTGGACAAGCATATGGAGCCAAACACTTGGGAGCAATGGGGATCATATGCCAAAGAGCGTTCATTTTACACTTGGGAGCGGCAATCCTCCTTACACCTCTGTATTGGTGGTCAGAACCAATGCTCATAGCCGTTGGACAATCACATATGATAGCAGAGAAGGGCCAAATCTTTTCCAGGGGTTTACTCCCTCAACTCTATGCATTTGCCATAAACTGTCCCCAGCAAAGCCTCTGCTTTCATGTTGTGTTTGGAGATATGGTACAGCCAAGGGCTAGTGCTTCTGTCAGGGCTCCTCCCCAACCCTACAACCTCCCTAGACTCCATTTCTATTTGCATGAATTACTTGAACTAGGACATGACATTTATGTTAGGCCTAAGTGCAGCTGCCAGTGTTCGAGTCGTGTGATTGTATTGATCCTCCGAGTTCAGTTAAGCAAGCTATTTGCAAGTGATTCCGAGGTTATCAAGGCAGTGTCTGATTTAACTCCACTGCTCGCCATCTCTATTTTCTTGAATGGCATTCAACCTATACTCTCAGGTGTGGCAATTGGAAGTGGATGGCAAGGTGTTGTGGCTTATGTTAACTTGTTTTGTTACTATTTCATTGGTCTTCCAATTGGGTGTGTTCTTGGCTTCAAACTTAAAATAGGAGTAGCAGGTATTTGGTGGGGGATGATTATTGGAGTTTTCTTACAGACGGTAGCTCTAGTTGTCCTCACTGCCAGAACAAATTGGAATGCTCAGGTTGAAAAAGCAGCTGAGCGGTTGAAGAAATCTGCAAGTGAAGAAAACTTAAGCTTAACACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

278

Amino Acids

30.41

Weight (kDa)

8.97

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 82	4.2e-11	MatE
MatE	PF01554	144 - 216	3.4e-10	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	674
AccBSI	CCGCTC	2 cut(s)	104, 790
AciI	CCGC	2 cut(s)	104, 790
AclWI	GGATC	2 cut(s)	74, 436
AfaI	GTAC	1 cut(s)	288
AflII	CTTAAG	1 cut(s)	820
AgsI	TTSAA	6 cut(s)	374, 541, 551, 664, 776, 796
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	5 cut(s)	411, 466, 731, 785, 825
AluI	AGCT	5 cut(s)	411, 466, 731, 785, 825
AlwI	GGATC	2 cut(s)	74, 436
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	2 cut(s)	187, 398
ApeKI	GCWGC	3 cut(s)	408, 411, 782
AspS9I	GGNCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	629
BbvI	GCAGC	3 cut(s)	398, 420, 794
BccI	CCATC	2 cut(s)	533, 579
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	202
BfaI	CTAG	4 cut(s)	300, 342, 377, 734
BfmI	CTRYAG	1 cut(s)	833
BfrI	CTTAAG	1 cut(s)	820
BfuAI	ACCTGC	1 cut(s)	674
BisI	GCNGC	4 cut(s)	105, 409, 412, 783
BlpI	GCTNAGC	1 cut(s)	786
BlsI	GCNGC	4 cut(s)	106, 410, 413, 784
Bme1390I	CCNGG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	43, 318
BmrFI	CCNGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	768
Bpu1102I	GCTNAGC	1 cut(s)	786
BsaJI	CCNNGG	3 cut(s)	201, 293, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	3 cut(s)	201, 293, 483
BseGI	GGATG	2 cut(s)	590, 705
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	576, 777, 782
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	398, 420, 794
BseYI	CCCAGC	1 cut(s)	246
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	189, 400
BslFI	GGGAC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	228
BsmI	GAATGC	2 cut(s)	546, 769
BsnI	GGCC	2 cut(s)	189, 400
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	66, 441
Bsp1720I	GCTNAGC	1 cut(s)	786
BspACI	CCGC	2 cut(s)	104, 790
BspANI	GGCC	2 cut(s)	189, 400
BspCNI	CTCAG	3 cut(s)	575, 778, 781
BspLI	GGNNCC	2 cut(s)	43, 318
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	2 cut(s)	74, 436
BspTI	CTTAAG	1 cut(s)	820
BsrBI	CCGCTC	2 cut(s)	104, 790
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	3 cut(s)	201, 293, 483
BssMI	GATC	2 cut(s)	66, 441
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	22, 242, 727
BstAFI	CTTAAG	1 cut(s)	820
BstC8I	GCNNGC	2 cut(s)	464, 522
BstDEI	CTNAG	4 cut(s)	402, 562, 768, 786
BstF5I	GGATG	2 cut(s)	590, 705
BstKTI	GATC	2 cut(s)	69, 444
BstMBI	GATC	2 cut(s)	66, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	833
BstV1I	GCAGC	3 cut(s)	398, 420, 794
BstV2I	GAAGAC	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	189, 400
BtsCI	GGATG	2 cut(s)	590, 705
BtsI	GCAGTG	3 cut(s)	504, 515, 744
BtsIMutI	CAGTG	4 cut(s)	422, 504, 515, 744
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	2 cut(s)	464, 522
CaiI	CAGNNNCTG	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	3 cut(s)	266, 362, 383
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	4 cut(s)	402, 562, 768, 786
DpnI	GATC	2 cut(s)	68, 443
DpnII	GATC	2 cut(s)	66, 441
Eco130I	CCWWGG	1 cut(s)	293
Eco147I	AGGCCT	1 cut(s)	400
Eco24I	GRGCYC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	3 cut(s)	269, 365, 386
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	3 cut(s)	265, 361, 382
FauNDI	CATATG	3 cut(s)	37, 71, 171
Fnu4HI	GCNGC	4 cut(s)	105, 409, 412, 783
FokI	GGATG	2 cut(s)	597, 712
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	4 cut(s)	105, 409, 412, 783
FspBI	CTAG	4 cut(s)	300, 342, 377, 734
GluI	GCNGC	4 cut(s)	105, 409, 412, 783
GsaI	CCCAGC	1 cut(s)	250
HaeIII	GGCC	2 cut(s)	189, 400
Hin1II	CATG	3 cut(s)	269, 365, 386
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	3 cut(s)	345, 424, 479
HpaI	GTTAAC	1 cut(s)	610
Hpy166II	GTNNAC	3 cut(s)	29, 209, 610
Hpy188I	TCNGA	4 cut(s)	139, 449, 484, 505
Hpy188III	TCNNGA	1 cut(s)	538
Hpy8I	GTNNAC	3 cut(s)	29, 209, 610
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	3 cut(s)	22, 242, 727
HpyCH4V	TGCA	6 cut(s)	16, 227, 361, 408, 473, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	4 cut(s)	402, 562, 768, 786
Hsp92II	CATG	3 cut(s)	269, 365, 386
KspAI	GTTAAC	1 cut(s)	610
Kzo9I	GATC	2 cut(s)	66, 441
LmnI	GCTCC	4 cut(s)	41, 56, 101, 322
LpnPI	CCDG	9 cut(s)	187, 214, 260, 298, 428, 549, 669, 755, 763
Lsp1109I	GCAGC	3 cut(s)	398, 420, 794
MaeI	CTAG	4 cut(s)	300, 342, 377, 734
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	2 cut(s)	68, 443
MbiI	CCGCTC	2 cut(s)	104, 790
MboI	GATC	2 cut(s)	66, 441
MboII	GAAGA	3 cut(s)	629, 808, 824
MfeI	CAATTG	2 cut(s)	573, 642
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	4 cut(s)	365, 573, 642, 757
MlyI	GAGTC	2 cut(s)	339, 433
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	9 cut(s)	122, 132, 225, 266, 330, 347, 455, 478, 752
Mph1103I	ATGCAT	1 cut(s)	229
MseI	TTAA	6 cut(s)	458, 509, 609, 669, 821, 827
MspA1I	CMGCKG	2 cut(s)	411, 785
MspCI	CTTAAG	1 cut(s)	820
MspR9I	CCNGG	1 cut(s)	202
MunI	CAATTG	2 cut(s)	573, 642
Mva1269I	GAATGC	2 cut(s)	546, 769
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeI	CATATG	3 cut(s)	37, 71, 171
NdeII	GATC	2 cut(s)	66, 441
NlaIII	CATG	3 cut(s)	269, 365, 386
NlaIV	GGNNCC	2 cut(s)	43, 318
NsiI	ATGCAT	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	400
PctI	GAATGC	2 cut(s)	546, 769
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	4 cut(s)	106, 410, 413, 784
PleI	GAGTC	2 cut(s)	339, 432
PpsI	GAGTC	2 cut(s)	339, 432
Psp6I	CCWGG	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	43, 318
PspPI	GGNCC	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	503
PvuII	CAGCTG	2 cut(s)	411, 785
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SaqAI	TTAA	6 cut(s)	458, 509, 609, 669, 821, 827
SatI	GCNGC	4 cut(s)	105, 409, 412, 783
Sau3AI	GATC	2 cut(s)	66, 441
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	2 cut(s)	339, 433
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	833
SmlI	CTYRAG	1 cut(s)	820
SmoI	CTYRAG	1 cut(s)	820
Sse9I	AATT	4 cut(s)	365, 573, 642, 757
SseBI	AGGCCT	1 cut(s)	400
SsiI	CCGC	2 cut(s)	104, 790
SspMI	CTAG	4 cut(s)	300, 342, 377, 734
StuI	AGGCCT	1 cut(s)	400
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	3 cut(s)	22, 242, 727
TaqI	TCGA	1 cut(s)	422
TasI	AATT	4 cut(s)	365, 573, 642, 757
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	6 cut(s)	458, 509, 609, 669, 821, 827
Tru9I	TTAA	6 cut(s)	458, 509, 609, 669, 821, 827
TscAI	CASTG	4 cut(s)	422, 504, 522, 751
TseI	GCWGC	3 cut(s)	408, 411, 782
TspDTI	ATGAA	4 cut(s)	76, 254, 378, 619
TspRI	CASTG	4 cut(s)	422, 504, 522, 751
Vha464I	CTTAAG	1 cut(s)	820
XspI	CTAG	4 cut(s)	300, 342, 377, 734
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.