Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000233.1

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Reverse (-)

123358 .. 125809

Gene Structure 2452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000233.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atggcaagtgctgtacaaacagtttgtgggcaagcctatggagcaaaacgcttgccagcaatggggatcatatgccaaagagcaatcattttgcacttgggagctgcaatcctcctcacacctgtgtactggtgggcaggcccaatactcgtcgccatcgggcaatcagaggacatatcagtgcagggtcaaatctttgcacgcggcctgatccctcaactctatgcatttgctataaactgcccacaacagaggttccttcaagcacagaacatagtgaaccctttggcatacatctctacgggagttttcacccttcacattcttctcagctggctagtggtatatgttgctgactatggactaactggtgctgcccttacactgagtttttcttggtggttgcttgttttaatatgtgggatttacattcttgtaagccccaactgcaaggaaacttggaccggcttctcttggaaagctttcaatggaatttggccttattttaagttgactatcgcctctgccgtcatgctgtgtttggagatatggtacaaccaaggactaaccctgatatctgggctcctccccaaccctacaatatctctagattccctttcaatttgtatgaattactggtgctggagtctgcagtttatgttaggattaagtgcagcagccagtgttagagtgagtaatgagctaggggctggtaatccaaaggtggccaaattttcggtttttgtagtgaccggtacaagcatcctgattagtgtagtcttcactgcaatcattttgatattccaaaatggattaactaagctgtttacaagcgaccccgaggttatccaagcagtaattgagttaattccgatgctgtctatctctgtttttttgaatggcatccaacctatactctcaggtgtggcaattggaagcgggtggcaagacatcgtggcttatgtcaacgttatttgtttctatatcattggactcccaattggatgtgttcttggcttcaaaactgatatgggagtagcgggcatttggtgggggatgattacgggcgttggtttacaaacaataactctaattattctcactgccagaacaaattggaatgctgaggttgtgaaagctgctgatcgcttgaaaagatctgcaagtgaagaagccttgaacttggtgggggctatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

399

Amino Acids

43.25

Weight (kDa)

7.99

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AciI	CCGC	3 cut(s)	204, 939, 1040
AclI	AACGTT	1 cut(s)	969
AclWI	GGATC	2 cut(s)	74, 205
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	2 cut(s)	492, 731
AfaI	GTAC	4 cut(s)	15, 128, 554, 757
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgeI	ACCGGT	1 cut(s)	752
AgsI	TTSAA	7 cut(s)	263, 487, 621, 898, 1021, 1153, 1180
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	6 cut(s)	104, 333, 482, 703, 823, 1139
AluI	AGCT	6 cut(s)	104, 333, 482, 703, 823, 1139
AlwI	GGATC	2 cut(s)	74, 205
Ama87I	CYCGRG	1 cut(s)	839
AoxI	GGCC	4 cut(s)	139, 205, 497, 726
ApeKI	GCWGC	5 cut(s)	104, 374, 674, 677, 1139
ApoI	RAATTY	2 cut(s)	492, 731
AsiGI	ACCGGT	1 cut(s)	752
Asp700I	GAANNNNTTC	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	140, 462
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	839
AvaII	GGWCC	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	772
BbvCI	CCTCAGC	1 cut(s)	1125
BbvI	GCAGC	5 cut(s)	91, 361, 686, 689, 1126
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	512
BfaI	CTAG	3 cut(s)	338, 608, 704
BfmI	CTRYAG	1 cut(s)	650
BglII	AGATCT	1 cut(s)	1157
BisI	GCNGC	6 cut(s)	105, 205, 375, 675, 678, 1140
BlsI	GCNGC	6 cut(s)	106, 206, 376, 676, 679, 1141
Bme18I	GGWCC	1 cut(s)	462
BmeT110I	CYCGRG	1 cut(s)	839
BmgT120I	GGNCC	2 cut(s)	140, 462
BmiI	GGNNCC	2 cut(s)	257, 584
BmsI	GCATC	3 cut(s)	771, 864, 912
BpiI	GAAGAC	1 cut(s)	772
BpmI	CTGGAG	1 cut(s)	664
Bpu10I	CCTNAGC	1 cut(s)	1125
BsaJI	CCNNGG	2 cut(s)	559, 840
BsaWI	WCCGGW	1 cut(s)	752
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	2 cut(s)	464, 752
Bse1I	ACTGG	4 cut(s)	134, 373, 641, 681
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	559, 840
BseGI	GGATG	4 cut(s)	762, 903, 1010, 1062
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	4 cut(s)	343, 377, 933, 1116
BseNI	ACTGG	4 cut(s)	134, 373, 641, 681
BseRI	GAGGAG	2 cut(s)	104, 575
BseXI	GCAGC	5 cut(s)	91, 361, 686, 689, 1126
BsgI	GTGCAG	2 cut(s)	203, 693
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	4 cut(s)	141, 207, 499, 728
BshTI	ACCGGT	1 cut(s)	752
BsiHKCI	CYCGRG	1 cut(s)	839
BsiSI	CCGG	2 cut(s)	465, 753
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	1126
BsnI	GGCC	4 cut(s)	141, 207, 499, 728
BsoBI	CYCGRG	1 cut(s)	839
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	66, 210, 1144, 1157
BspACI	CCGC	3 cut(s)	204, 939, 1040
BspANI	GGCC	4 cut(s)	141, 207, 499, 728
BspCNI	CTCAG	4 cut(s)	342, 378, 932, 1117
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	257, 584
BspMAI	CTGCAG	1 cut(s)	654
BspPI	GGATC	2 cut(s)	74, 205
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	464, 752
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	4 cut(s)	134, 373, 641, 681
BssAI	RCCGGY	2 cut(s)	464, 752
BssECI	CCNNGG	2 cut(s)	559, 840
BssMI	GATC	4 cut(s)	66, 210, 1144, 1157
BssT1I	CCWWGG	1 cut(s)	559
Bst4CI	ACNGT	1 cut(s)	22
BstAUI	TGTACA	1 cut(s)	13
BstC8I	GCNNGC	7 cut(s)	33, 53, 57, 139, 202, 335, 1042
BstDEI	CTNAG	5 cut(s)	329, 386, 819, 919, 1125
BstF5I	GGATG	4 cut(s)	762, 903, 1010, 1062
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	4 cut(s)	69, 213, 1147, 1160
BstMBI	GATC	4 cut(s)	66, 210, 1144, 1157
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 447
BstSFI	CTRYAG	1 cut(s)	650
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	5 cut(s)	91, 361, 686, 689, 1126
BstV2I	GAAGAC	1 cut(s)	772
BstX2I	RGATCY	1 cut(s)	1157
BstYI	RGATCY	1 cut(s)	1157
BsuRI	GGCC	4 cut(s)	141, 207, 499, 728
BtsCI	GGATG	4 cut(s)	762, 903, 1010, 1062
BtsI	GCAGTG	2 cut(s)	783, 1101
BtsIMutI	CAGTG	5 cut(s)	186, 383, 688, 783, 1101
Cac8I	GCNNGC	7 cut(s)	33, 53, 57, 139, 202, 335, 1042
Cfr10I	RCCGGY	2 cut(s)	464, 752
Cfr13I	GGNCC	2 cut(s)	140, 462
Csp6I	GTAC	4 cut(s)	14, 127, 553, 756
CspAI	ACCGGT	1 cut(s)	752
CviAII	CATG	1 cut(s)	532
CviQI	GTAC	4 cut(s)	14, 127, 553, 756
DdeI	CTNAG	5 cut(s)	329, 386, 819, 919, 1125
DpnI	GATC	4 cut(s)	68, 212, 1146, 1159
DpnII	GATC	4 cut(s)	66, 210, 1144, 1157
EaeI	YGGCCR	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	559
Eco24I	GRGCYC	1 cut(s)	585
Eco32I	GATATC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	839
EcoRV	GATATC	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	1 cut(s)	535
FatI	CATG	1 cut(s)	531
FauI	CCCGC	2 cut(s)	932, 1033
FauNDI	CATATG	1 cut(s)	71
Fnu4HI	GCNGC	6 cut(s)	105, 205, 375, 675, 678, 1140
FokI	GGATG	4 cut(s)	749, 890, 1017, 1069
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	6 cut(s)	105, 205, 375, 675, 678, 1140
FspBI	CTAG	3 cut(s)	338, 608, 704
GluI	GCNGC	6 cut(s)	105, 205, 375, 675, 678, 1140
GsuI	CTGGAG	1 cut(s)	664
HaeIII	GGCC	4 cut(s)	141, 207, 499, 728
HapII	CCGG	2 cut(s)	465, 753
Hin1II	CATG	1 cut(s)	535
HincII	GTYRAC	2 cut(s)	513, 967
HindII	GTYRAC	2 cut(s)	513, 967
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	3 cut(s)	611, 646, 993
HpaII	CCGG	2 cut(s)	465, 753
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	6 cut(s)	127, 280, 513, 828, 967, 1076
Hpy188I	TCNGA	2 cut(s)	169, 873
Hpy188III	TCNNGA	2 cut(s)	608, 766
Hpy8I	GTNNAC	6 cut(s)	127, 280, 513, 828, 967, 1076
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	269, 326
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	969
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 447
HpyF3I	CTNAG	5 cut(s)	329, 386, 819, 919, 1125
HpySE526I	ACGT	1 cut(s)	969
Hsp92II	CATG	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	66, 210, 1144, 1157
LmnI	GCTCC	3 cut(s)	41, 101, 588
Lsp1109I	GCAGC	5 cut(s)	91, 361, 686, 689, 1126
LweI	GCATC	3 cut(s)	771, 864, 912
MaeI	CTAG	3 cut(s)	338, 608, 704
MaeII	ACGT	1 cut(s)	969
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	4 cut(s)	68, 212, 1146, 1159
MboI	GATC	4 cut(s)	66, 210, 1144, 1157
MboII	GAAGA	3 cut(s)	317, 772, 1181
MfeI	CAATTG	2 cut(s)	930, 999
MflI	RGATCY	1 cut(s)	1157
MhlI	GDGCHC	1 cut(s)	585
MlsI	TGGCCA	1 cut(s)	728
MluNI	TGGCCA	1 cut(s)	728
MlyI	GAGTC	2 cut(s)	655, 987
MmeI	TCCRAC	1 cut(s)	931
MnlI	CCTC	9 cut(s)	122, 125, 163, 225, 246, 532, 596, 835, 1120
Mox20I	TGGCCA	1 cut(s)	728
Mph1103I	ATGCAT	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	5 cut(s)	413, 507, 668, 815, 866
MslI	CAYNNNNRTG	2 cut(s)	122, 179
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	2 cut(s)	465, 753
MunI	CAATTG	2 cut(s)	930, 999
Mva1269I	GAATGC	1 cut(s)	1126
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	41, 447
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	4 cut(s)	66, 210, 1144, 1157
NlaIII	CATG	1 cut(s)	535
NlaIV	GGNNCC	2 cut(s)	257, 584
NmuCI	GTSAC	1 cut(s)	748
NsiI	ATGCAT	1 cut(s)	229
OliI	CACNNNNGTG	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PctI	GAATGC	1 cut(s)	1126
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	611
PinAI	ACCGGT	1 cut(s)	752
PkrI	GCNGC	6 cut(s)	106, 206, 376, 676, 679, 1141
PleI	GAGTC	2 cut(s)	654, 987
PpsI	GAGTC	2 cut(s)	654, 987
Psp1406I	AACGTT	1 cut(s)	969
PspN4I	GGNNCC	2 cut(s)	257, 584
PspPI	GGNCC	2 cut(s)	140, 462
PstI	CTGCAG	1 cut(s)	654
PsuI	RGATCY	1 cut(s)	1157
PvuII	CAGCTG	1 cut(s)	333
RsaI	GTAC	4 cut(s)	15, 128, 554, 757
RsaNI	GTAC	4 cut(s)	14, 127, 553, 756
RseI	CAYNNNNRTG	2 cut(s)	122, 179
SaqAI	TTAA	5 cut(s)	413, 507, 668, 815, 866
SatI	GCNGC	6 cut(s)	105, 205, 375, 675, 678, 1140
Sau3AI	GATC	4 cut(s)	66, 210, 1144, 1157
Sau96I	GGNCC	2 cut(s)	140, 462
SchI	GAGTC	2 cut(s)	655, 987
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	3 cut(s)	771, 864, 912
SfcI	CTRYAG	1 cut(s)	650
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	2 cut(s)	122, 179
SsiI	CCGC	3 cut(s)	204, 939, 1040
SspMI	CTAG	3 cut(s)	338, 608, 704
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	972
TatI	WGTACW	2 cut(s)	13, 126
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	5 cut(s)	413, 507, 668, 815, 866
Tru9I	TTAA	5 cut(s)	413, 507, 668, 815, 866
TscAI	CASTG	5 cut(s)	186, 390, 688, 790, 1108
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	5 cut(s)	104, 374, 674, 677, 1139
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	1 cut(s)	644
TspRI	CASTG	5 cut(s)	186, 390, 688, 790, 1108
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	2 cut(s)	492, 731
XbaI	TCTAGA	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	3 cut(s)	338, 608, 704
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.