Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Reverse (-)

66408306 .. 66410494

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G040800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGATTATGGTCCAATACTCGTAGCCATGGGACAATCAGAAAGTATAGCAGAACAGGGTCAAATCTTTGCGCGCGCTTAATCCCTCAACTCTATGCATTTGCCATAAACTGCCCACAACAGAGGTTCCTTCAGGCACAGAACATAGTGAACCCTTTGGCATACATGTCCATTGGAGTTTTCCTCCTTCACACTACTCTCACTTGGTTGGTGGTTTATGTTGTGGACTATGGACTAATAGGGCTCCTAGCCAACCCTACAATCTCATTGGACTCCATTTCTATCTGCATGAACTACTTGAACTGGGACATGCAATTTATGCTAGGCCTCGCTGCTGCAGCAAGCGTTCGAGTGAGTAATGAGCTAGGTGCTGGTCATCCAAAGGTGGCCAAATTTTCTGTGTTTGTAGTGAATGGGACCAGCATCCTGATTAGCATAGTGTTCAGTGCTATTGTGCTGATATTCAAAGTGGGATTGAGCAAGCTATTTACAAGTGACGCCGATGTTATTGAGGCAGTATCTGAATTGACCCCCTTGCTAGCCATCTCTGTTTTCTTGAATGGCATTCAACCTATACTCTCAGGTGTGGCAATTGGAAGTGGATGGCAAGCTGTTGTAGCTTATGTGAACCTGACTTGTTATTATATTATCGGTCTTCCAATTGGGTGTGTTCTTGGCTTCAAAACTAGTATGGGAGTAGCAGGTATTTGGTGGGGGATGATTATTGGAGTATCTTTACAGACAGCAACTCTAATTGTTCTCACTGCCAGAACCAACTGGGATGCTGAGGTTGTGAACGCGGCTGAGAGATTGAAGAGATCTGCAAGTGTAGAACAATTGCTCTTGGAGGAAAACGGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

287

Amino Acids

31.02

Weight (kDa)

8.27

Isoelectric Point (pI)

23.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	71 - 222	5.8e-25	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	692
AccII	CGCG	3 cut(s)	74, 76, 800
AciI	CCGC	1 cut(s)	800
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	498
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	6 cut(s)	301, 466, 559, 569, 682, 814
AhlI	ACTAGT	1 cut(s)	686
AluBI	AGCT	4 cut(s)	364, 484, 611, 620
AluI	AGCT	4 cut(s)	364, 484, 611, 620
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	325, 387
ApeKI	GCWGC	3 cut(s)	332, 335, 338
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	3 cut(s)	74, 76, 78
AspS9I	GGNCC	2 cut(s)	12, 417
AsuNHI	GCTAGC	1 cut(s)	538
AvaII	GGWCC	2 cut(s)	12, 417
BalI	TGGCCA	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	647
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	3 cut(s)	319, 322, 350
BccI	CCATC	2 cut(s)	551, 597
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	5 cut(s)	248, 323, 365, 539, 687
BfmI	CTRYAG	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	692
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	4 cut(s)	333, 336, 339, 801
BlsI	GCNGC	4 cut(s)	334, 337, 340, 802
Bme18I	GGWCC	2 cut(s)	12, 417
BmgT120I	GGNCC	2 cut(s)	12, 417
BmiI	GGNNCC	3 cut(s)	128, 245, 418
BmrI	ACTGGG	2 cut(s)	313, 787
BmsI	GCATC	2 cut(s)	432, 772
BmtI	GCTAGC	1 cut(s)	542
BmuI	ACTGGG	2 cut(s)	313, 787
BpiI	GAAGAC	1 cut(s)	647
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
Bpu10I	CCTNAGC	1 cut(s)	786
BsaHI	GRCGYC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	308, 782
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	5 cut(s)	376, 423, 608, 723, 787
BseMII	CTCAG	3 cut(s)	594, 777, 795
BseNI	ACTGG	2 cut(s)	308, 782
BsePI	GCGCGC	2 cut(s)	72, 74
BseXI	GCAGC	3 cut(s)	319, 322, 350
Bsh1236I	CGCG	3 cut(s)	74, 76, 800
BshFI	GGCC	2 cut(s)	327, 389
BslFI	GGGAC	3 cut(s)	46, 320, 430
BsmFI	GGGAC	3 cut(s)	46, 320, 430
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	2 cut(s)	327, 389
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	818
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	1 cut(s)	800
BspANI	GGCC	2 cut(s)	327, 389
BspCNI	CTCAG	3 cut(s)	593, 778, 796
BspFNI	CGCG	3 cut(s)	74, 76, 800
BspLI	GGNNCC	3 cut(s)	128, 245, 418
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	692
BspOI	GCTAGC	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	308, 782
BssECI	CCNNGG	1 cut(s)	28
BssHII	GCGCGC	2 cut(s)	72, 74
BssMI	GATC	1 cut(s)	818
BssNI	GRCGYC	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	809
BstACI	GRCGYC	1 cut(s)	498
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstC8I	GCNNGC	6 cut(s)	74, 76, 343, 482, 540, 609
BstDEI	CTNAG	3 cut(s)	580, 786, 804
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	5 cut(s)	376, 423, 608, 723, 787
BstFNI	CGCG	3 cut(s)	74, 76, 800
BstHHI	GCGC	3 cut(s)	74, 76, 78
BstKTI	GATC	1 cut(s)	821
BstMBI	GATC	1 cut(s)	818
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 338, 617
BstNSI	RCATGY	2 cut(s)	169, 313
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	3 cut(s)	74, 76, 800
BstV1I	GCAGC	3 cut(s)	319, 322, 350
BstV2I	GAAGAC	1 cut(s)	647
BstX2I	RGATCY	1 cut(s)	818
BstYI	RGATCY	1 cut(s)	818
BsuRI	GGCC	2 cut(s)	327, 389
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	5 cut(s)	376, 423, 608, 723, 787
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	451, 762
BveI	ACCTGC	1 cut(s)	692
Cac8I	GCNNGC	6 cut(s)	74, 76, 343, 482, 540, 609
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	3 cut(s)	74, 76, 78
Cfr13I	GGNCC	2 cut(s)	12, 417
CseI	GACGC	1 cut(s)	506
CviAII	CATG	4 cut(s)	29, 166, 289, 310
DdeI	CTNAG	3 cut(s)	580, 786, 804
DpnI	GATC	1 cut(s)	820
DpnII	GATC	1 cut(s)	818
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	809
EarI	CTCTTC	1 cut(s)	809
Eco130I	CCWWGG	1 cut(s)	28
Eco147I	AGGCCT	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	2 cut(s)	12, 417
Eco57I	CTGAAG	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	4 cut(s)	32, 169, 292, 313
FaqI	GGGAC	3 cut(s)	46, 320, 430
FatI	CATG	4 cut(s)	28, 165, 288, 309
Fnu4HI	GCNGC	4 cut(s)	333, 336, 339, 801
FokI	GGATG	5 cut(s)	363, 410, 615, 730, 794
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	333, 336, 339, 801
FspBI	CTAG	5 cut(s)	248, 323, 365, 539, 687
GlaI	GCGC	3 cut(s)	73, 75, 77
GluI	GCNGC	4 cut(s)	333, 336, 339, 801
HaeIII	GGCC	2 cut(s)	327, 389
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	3 cut(s)	74, 76, 78
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	4 cut(s)	32, 169, 292, 313
Hin6I	GCGC	3 cut(s)	72, 74, 76
HinP1I	GCGC	3 cut(s)	72, 74, 76
HinfI	GANTC	1 cut(s)	272
Hpy166II	GTNNAC	4 cut(s)	151, 226, 628, 796
Hpy188I	TCNGA	2 cut(s)	41, 523
Hpy188III	TCNNGA	2 cut(s)	427, 556
Hpy8I	GTNNAC	4 cut(s)	151, 226, 628, 796
HpyAV	CCTTC	2 cut(s)	140, 197
HpyCH4V	TGCA	5 cut(s)	98, 288, 313, 338, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 338, 617
HpyF3I	CTNAG	3 cut(s)	580, 786, 804
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	4 cut(s)	32, 169, 292, 313
HspAI	GCGC	3 cut(s)	72, 74, 76
Kzo9I	GATC	1 cut(s)	818
LmnI	GCTCC	1 cut(s)	249
Lsp1109I	GCAGC	3 cut(s)	319, 322, 350
LweI	GCATC	2 cut(s)	432, 772
MaeI	CTAG	5 cut(s)	248, 323, 365, 539, 687
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	1 cut(s)	820
MboI	GATC	1 cut(s)	818
MboII	GAAGA	2 cut(s)	647, 826
MfeI	CAATTG	3 cut(s)	591, 660, 836
MflI	RGATCY	1 cut(s)	818
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	7 cut(s)	314, 392, 524, 591, 660, 753, 836
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	7 cut(s)	96, 117, 194, 338, 505, 781, 841
Mox20I	TGGCCA	1 cut(s)	389
Mph1103I	ATGCAT	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	389
MunI	CAATTG	3 cut(s)	591, 660, 836
Mva1269I	GAATGC	1 cut(s)	564
MvnI	CGCG	3 cut(s)	74, 76, 800
MwoI	GCNNNNNNNGC	3 cut(s)	319, 338, 617
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	818
NheI	GCTAGC	1 cut(s)	538
NlaIII	CATG	4 cut(s)	32, 169, 292, 313
NlaIV	GGNNCC	3 cut(s)	128, 245, 418
NmuCI	GTSAC	1 cut(s)	494
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	2 cut(s)	169, 313
PauI	GCGCGC	2 cut(s)	72, 74
PceI	AGGCCT	1 cut(s)	327
PciI	ACATGT	1 cut(s)	165
PctI	GAATGC	1 cut(s)	564
PkrI	GCNGC	4 cut(s)	334, 337, 340, 802
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PscI	ACATGT	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	128, 245, 418
PspPI	GGNCC	2 cut(s)	12, 417
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	818
PteI	GCGCGC	2 cut(s)	72, 74
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	4 cut(s)	333, 336, 339, 801
Sau3AI	GATC	1 cut(s)	818
Sau96I	GGNCC	2 cut(s)	12, 417
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	432, 772
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	12, 417
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	7 cut(s)	314, 392, 524, 591, 660, 753, 836
SseBI	AGGCCT	1 cut(s)	327
SsiI	CCGC	1 cut(s)	800
SspMI	CTAG	5 cut(s)	248, 323, 365, 539, 687
StuI	AGGCCT	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	28
TaqI	TCGA	1 cut(s)	349
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	7 cut(s)	314, 392, 524, 591, 660, 753, 836
TauI	GCSGC	1 cut(s)	803
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TscAI	CASTG	2 cut(s)	451, 769
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	3 cut(s)	332, 335, 338
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	2 cut(s)	451, 769
VpaK11BI	GGWCC	2 cut(s)	12, 417
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	2 cut(s)	169, 313
XspI	CTAG	5 cut(s)	248, 323, 365, 539, 687
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.