Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Forward (+)

70160723 .. 70163583

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG495900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCAAGTGCTGTGCAAACAGTATGTGGACAAGCATATGGAGCCAAACACTTGGGAGCAATGGGGATCATATGCCAAAGAGCATTCATTTTACACTTGGGAGCGGCAATCCTCCTTACACCTCTGTATTGGTGGTCAGAACCAATGCTCATAGCCGTTGGACAATCACATATGATAGCAGAGAAGGGCCAAATCTTTTCCAGGGGTTTACTCCCTCAACTCTATGCATTTGCCATAAACTGTCCCCAGCAAAGGTTCCTTCAAGCGCAAAACATAGTGAACCCTTTGGCATTCATGTCTGTCGCAGTTTTCCTTCTTCACACTCTGCTCACTTGGTTGGTAGTTGATGTTGTCAATTTTGGGCTATTGGGAGCTGCTCTTACTCTCAGCTTCTCTTGGTGGTTGCTTGTAATTGCATCTGGGGTTTACATTGTTCTGAGCCCCAAGTGCAAGGAAACTTGGACTGGCTTCTCTAACAAAGCCTTCAGGGGAATTTGGCCTTATTTTAAGTTCACTGTAGCTTCTGCTTTCATGTTGTGTTTGGAGATATGGTACAGCCAAGGGCTAGTGCTTCTGTCAGGGCTCCTCCCCAACCCTACAACCTCCCTAGACTCCATTTCTATTTGCATGAATTACTTGAACTGGGACATGACATTTATGTTAGGCCTAAGTGCAGCTGCCAGTGTTCGAGTCGGTAATGAACTCGGGGCCGGTCATCCAAAGGTGGCCAGATTCTCAGTTTTTGTAGTGAACGTGACCAGCGTCCTAATTAGCGTAATCTTCAGTGTGATTGTATTGATTCTCCGAGTTCAGTTAAGCAAGCTATTTGCAAGTGATTCCGAGGTTATCAAGGCAGTGTCTGATTTAACTCCACTGCTCGCCATCTCTATTTTCTTGAATGGCATTCAACCTATACTCTCAGGTGTGGCAATTGGAAGTGGATGGCAAGGTGTTGTGGCTTATGTTAACTTGTCTTGTTACTATTTCATTGGTCTTCCAATTGGGTGTGTTCTTGGCTTCAAACTTAAAATAGGAGTAGCAGGTATTTGGTGGGGGATGATTATTGGAGTTTTCTTACAGACGGTAGCTCTAGTTGTCCTCACTGCCAGAACAAATTGGAATGCTCAGGTTGAAAAAGCAGCTGAGCGGTTGAAGAAATCTGCAAGTGAAGAAAACTTAAGCTTAACACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

397

Amino Acids

43.21

Weight (kDa)

9.09

Isoelectric Point (pI)

21.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 113	4.7e-17	MatE
MatE	PF01554	175 - 335	8.6e-29	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1031
AccBSI	CCGCTC	2 cut(s)	104, 1147
AciI	CCGC	2 cut(s)	104, 1147
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	2 cut(s)	469, 766
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflII	CTTAAG	1 cut(s)	1177
AgsI	TTSAA	7 cut(s)	263, 640, 898, 908, 1021, 1133, 1153
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	8 cut(s)	374, 390, 521, 677, 823, 1088, 1142, 1182
AluI	AGCT	8 cut(s)	374, 390, 521, 677, 823, 1088, 1142, 1182
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	5 cut(s)	187, 497, 664, 708, 726
ApeKI	GCWGC	4 cut(s)	374, 674, 677, 1139
ApoI	RAATTY	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	187, 708
AvaI	CYCGRG	1 cut(s)	704
BalI	TGGCCA	1 cut(s)	728
BanII	GRGCYC	2 cut(s)	443, 585
BbsI	GAAGAC	1 cut(s)	986
BbvI	GCAGC	4 cut(s)	361, 664, 686, 1151
BccI	CCATC	2 cut(s)	890, 936
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	202
BfaI	CTAG	3 cut(s)	566, 608, 1091
BfmI	CTRYAG	2 cut(s)	516, 1190
BfrI	CTTAAG	1 cut(s)	1177
BfuAI	ACCTGC	1 cut(s)	1031
BisI	GCNGC	5 cut(s)	105, 375, 675, 678, 1140
BlpI	GCTNAGC	1 cut(s)	1143
BlsI	GCNGC	5 cut(s)	106, 376, 676, 679, 1141
Bme1390I	CCNGG	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	704
BmgT120I	GGNCC	2 cut(s)	187, 708
BmiI	GGNNCC	4 cut(s)	43, 257, 584, 709
BmrFI	CCNGG	1 cut(s)	202
BmrI	ACTGGG	1 cut(s)	652
BmsI	GCATC	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	652
BoxI	GACNNNNGTC	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	986
Bpu10I	CCTNAGC	1 cut(s)	1125
Bpu1102I	GCTNAGC	1 cut(s)	1143
BsaJI	CCNNGG	3 cut(s)	201, 559, 840
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse118I	RCCGGY	1 cut(s)	710
Bse1I	ACTGG	3 cut(s)	469, 647, 681
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	3 cut(s)	201, 559, 840
BseGI	GGATG	3 cut(s)	715, 947, 1062
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	6 cut(s)	400, 428, 750, 933, 1134, 1139
BseNI	ACTGG	3 cut(s)	469, 647, 681
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	4 cut(s)	361, 664, 686, 1151
BseYI	CCCAGC	1 cut(s)	246
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	5 cut(s)	189, 499, 666, 710, 728
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	1 cut(s)	711
BslFI	GGGAC	2 cut(s)	228, 659
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	228, 659
BsmI	GAATGC	4 cut(s)	83, 290, 903, 1126
BsnI	GGCC	5 cut(s)	189, 499, 666, 710, 728
BsoBI	CYCGRG	1 cut(s)	704
Bsp1286I	GDGCHC	2 cut(s)	443, 585
Bsp143I	GATC	1 cut(s)	66
Bsp1720I	GCTNAGC	1 cut(s)	1143
BspACI	CCGC	2 cut(s)	104, 1147
BspANI	GGCC	5 cut(s)	189, 499, 666, 710, 728
BspCNI	CTCAG	6 cut(s)	399, 429, 749, 932, 1135, 1138
BspLI	GGNNCC	4 cut(s)	43, 257, 584, 709
BspMI	ACCTGC	1 cut(s)	1031
BspPI	GGATC	1 cut(s)	74
BspTI	CTTAAG	1 cut(s)	1177
BsrBI	CCGCTC	2 cut(s)	104, 1147
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	710
BsrI	ACTGG	3 cut(s)	469, 647, 681
BssAI	RCCGGY	1 cut(s)	710
BssECI	CCNNGG	3 cut(s)	201, 559, 840
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	4 cut(s)	22, 242, 517, 1084
BstAFI	CTTAAG	1 cut(s)	1177
BstC8I	GCNNGC	2 cut(s)	821, 879
BstDEI	CTNAG	7 cut(s)	386, 437, 668, 736, 919, 1125, 1143
BstF5I	GGATG	3 cut(s)	715, 947, 1062
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 447
BstNI	CCWGG	1 cut(s)	202
BstPAI	GACNNNNGTC	1 cut(s)	761
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	2 cut(s)	516, 1190
BstV1I	GCAGC	4 cut(s)	361, 664, 686, 1151
BstV2I	GAAGAC	1 cut(s)	986
BstXI	CCANNNNNNTGG	1 cut(s)	52
BsuRI	GGCC	5 cut(s)	189, 499, 666, 710, 728
BtsCI	GGATG	3 cut(s)	715, 947, 1062
BtsI	GCAGTG	3 cut(s)	861, 872, 1101
BtsIMutI	CAGTG	6 cut(s)	513, 688, 790, 861, 872, 1101
BveI	ACCTGC	1 cut(s)	1031
Cac8I	GCNNGC	2 cut(s)	821, 879
CaiI	CAGNNNCTG	1 cut(s)	860
CfoI	GCGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	710
Cfr13I	GGNCC	2 cut(s)	187, 708
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	4 cut(s)	295, 532, 628, 649
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	7 cut(s)	386, 437, 668, 736, 919, 1125, 1143
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	559
Eco147I	AGGCCT	1 cut(s)	666
Eco24I	GRGCYC	2 cut(s)	443, 585
Eco57I	CTGAAG	2 cut(s)	469, 766
Eco88I	CYCGRG	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	2 cut(s)	443, 585
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	4 cut(s)	298, 535, 631, 652
FaqI	GGGAC	2 cut(s)	228, 659
FatI	CATG	4 cut(s)	294, 531, 627, 648
FauNDI	CATATG	3 cut(s)	37, 71, 171
Fnu4HI	GCNGC	5 cut(s)	105, 375, 675, 678, 1140
FokI	GGATG	3 cut(s)	702, 954, 1069
FriOI	GRGCYC	2 cut(s)	443, 585
Fsp4HI	GCNGC	5 cut(s)	105, 375, 675, 678, 1140
FspBI	CTAG	3 cut(s)	566, 608, 1091
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	5 cut(s)	105, 375, 675, 678, 1140
GsaI	CCCAGC	1 cut(s)	250
HaeIII	GGCC	5 cut(s)	189, 499, 666, 710, 728
HapII	CCGG	1 cut(s)	711
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	4 cut(s)	298, 535, 631, 652
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HindIII	AAGCTT	1 cut(s)	1180
HinfI	GANTC	5 cut(s)	611, 690, 732, 799, 836
HpaI	GTTAAC	1 cut(s)	967
HpaII	CCGG	1 cut(s)	711
Hpy166II	GTNNAC	7 cut(s)	29, 209, 280, 427, 513, 751, 967
Hpy188I	TCNGA	5 cut(s)	139, 438, 806, 841, 862
Hpy188III	TCNNGA	1 cut(s)	895
Hpy8I	GTNNAC	7 cut(s)	29, 209, 280, 427, 513, 751, 967
HpyAV	CCTTC	4 cut(s)	178, 269, 323, 493
HpyCH4III	ACNGT	4 cut(s)	22, 242, 517, 1084
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	8 cut(s)	16, 227, 416, 450, 627, 674, 830, 1163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 447
HpyF3I	CTNAG	7 cut(s)	386, 437, 668, 736, 919, 1125, 1143
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	4 cut(s)	298, 535, 631, 652
HspAI	GCGC	1 cut(s)	266
KspAI	GTTAAC	1 cut(s)	967
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	5 cut(s)	41, 56, 101, 371, 588
Lsp1109I	GCAGC	4 cut(s)	361, 664, 686, 1151
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	3 cut(s)	566, 608, 1091
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	2 cut(s)	754, 977
MalI	GATC	1 cut(s)	68
MbiI	CCGCTC	2 cut(s)	104, 1147
MboI	GATC	1 cut(s)	66
MboII	GAAGA	5 cut(s)	308, 772, 986, 1165, 1181
MfeI	CAATTG	2 cut(s)	930, 999
MhlI	GDGCHC	2 cut(s)	443, 585
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	8 cut(s)	355, 411, 492, 631, 768, 930, 999, 1114
MluNI	TGGCCA	1 cut(s)	728
MlyI	GAGTC	2 cut(s)	605, 699
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	7 cut(s)	122, 132, 225, 596, 613, 835, 1109
Mox20I	TGGCCA	1 cut(s)	728
Mph1103I	ATGCAT	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	7 cut(s)	507, 815, 866, 966, 1026, 1178, 1184
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	2 cut(s)	677, 1142
MspCI	CTTAAG	1 cut(s)	1177
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	1 cut(s)	202
MunI	CAATTG	2 cut(s)	930, 999
Mva1269I	GAATGC	4 cut(s)	83, 290, 903, 1126
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	41, 447
NdeI	CATATG	3 cut(s)	37, 71, 171
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	4 cut(s)	298, 535, 631, 652
NlaIV	GGNNCC	4 cut(s)	43, 257, 584, 709
NmuCI	GTSAC	1 cut(s)	754
NsiI	ATGCAT	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	759
PctI	GAATGC	4 cut(s)	83, 290, 903, 1126
PfeI	GAWTC	3 cut(s)	732, 799, 836
PkrI	GCNGC	5 cut(s)	106, 376, 676, 679, 1141
PleI	GAGTC	2 cut(s)	605, 698
PpsI	GAGTC	2 cut(s)	605, 698
PshAI	GACNNNNGTC	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	4 cut(s)	43, 257, 584, 709
PspPI	GGNCC	2 cut(s)	187, 708
PstNI	CAGNNNCTG	1 cut(s)	860
PvuII	CAGCTG	2 cut(s)	677, 1142
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SaqAI	TTAA	7 cut(s)	507, 815, 866, 966, 1026, 1178, 1184
SatI	GCNGC	5 cut(s)	105, 375, 675, 678, 1140
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	2 cut(s)	187, 708
SchI	GAGTC	2 cut(s)	605, 699
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	443, 585
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	2 cut(s)	516, 1190
SmlI	CTYRAG	1 cut(s)	1177
SmoI	CTYRAG	1 cut(s)	1177
Sse9I	AATT	8 cut(s)	355, 411, 492, 631, 768, 930, 999, 1114
SseBI	AGGCCT	1 cut(s)	666
SsiI	CCGC	2 cut(s)	104, 1147
SspMI	CTAG	3 cut(s)	566, 608, 1091
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	4 cut(s)	22, 242, 517, 1084
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	1 cut(s)	688
TasI	AATT	8 cut(s)	355, 411, 492, 631, 768, 930, 999, 1114
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	3 cut(s)	732, 799, 836
Tru1I	TTAA	7 cut(s)	507, 815, 866, 966, 1026, 1178, 1184
Tru9I	TTAA	7 cut(s)	507, 815, 866, 966, 1026, 1178, 1184
TscAI	CASTG	6 cut(s)	520, 688, 790, 861, 879, 1108
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	4 cut(s)	374, 674, 677, 1139
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	6 cut(s)	76, 283, 520, 644, 714, 976
TspRI	CASTG	6 cut(s)	520, 688, 790, 861, 879, 1108
Vha464I	CTTAAG	1 cut(s)	1177
XapI	RAATTY	1 cut(s)	492
XspI	CTAG	3 cut(s)	566, 608, 1091
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.