Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Forward (+)

55588235 .. 55594798

Gene Structure 6564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0434900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGTCTTCTTACGCATCTCATATCATCCACCACTCCAAAAAGTTAAGGAATGCTCCCAACTTACTAAGGCATGATCGTGCCCTCTTGGTGCGTTGTTTTTCACACAATGCTCAACCCACTACTGGTAAGACAAATATACGTAAGGTTCATTGTCATGGTTTTGCGCCTTTGGGAGGAGAAACTAGGTCGTTCAGCAGTAGCACTAAATCACTGTCTGGCACATTCACCAGGAATGTCTCAACAACAATGAATATGGGGAGTTCAATTTCTGGATCAATATATAACAATCAGATTTCATGTTTGCAGGGACAATTGAGGAGAGGCTTTTCCTCTGATGCAGGCCTTCCTCCGCACCAAGAAATTGGAATGCCTTCTCTTTCACCTACTATGTCTGAGGGTAATATTGTAAGGTGGTTGAAGAAAGAGGGTGATCAAGTTTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCTACAGTTGAGATGGAATGCATGGAGGACGGATATCTTGCCAAGATTGTACAAGGAGAAGGGGCCCAAGGAATCAAAGTTGGCGAGGTGATCTGCGTAACTGTTGAAGATGAGGAAGATATTGCAAAGTTCAAAGATTACACACCATCAGCATCAGGTTCTGGTGGTGATGTAGCTAAAGGGTCATCTGACTCTAGCCCACCTCCCCCGCCCAAAAAAGAGGCAGTTGAAGCACCAGTTGCTGCTCCCGAGCCAAAGACTTCAAAGCCCAGTGCAGCTCCTCCTTCTGGAGATCGTGTATTTGCAAGTCCTCTTGCAAGAAGTTTGGCTGAGGAACACAAGGTACCCCTCTCAAGTATCAAAGGAACAGGCCCGGATGGAAGCATTGTGAAGGCTGATATTGAAGAGTACTTGGCTTCTGGTGGGAAGCAAGTTTCTGAACCAGCTCCGAAGGCTAAGGGTGCTGCAGCCCCAGCACTGGATTACACGGACATCCCTCATACTCAGATACGGAAGGTTACAGCTTCAAGATTATTATTCTCAAAGCAAACTATTCCTCATTATTATTTGACAGTAGATACATGTGTCGACAAGCTCGTTGAGTTGAGAGGCCAGCTCAATTCATTGCAAGAAGCTACAGGTGGGAAGCGGATATCTATCAATGATCTTGTAATAAAGGCTGCTGCTTTGGCTCTTCAAAAGATTCCTCAGGTCAATAGCTCATGGACAGATGATTGCATCCGCCAGTATCACAATGTGAATGTTAATGTTGCAGTGCAGACAGACAATGGACTATATGTTCCTGTCGTCAGGGATGCGAACAAAAAGGGACTATCCGCTATATCTGAGGAGGTTAAGCTGCTGGCCCAAAAAGCCAAGGAGAACAGCTTAAAGCCAGAAGATTATGAGGGAGGGACATTTACAGTGTCGAATTTGGGAGGTCCATTTGGCATCAAACAATTTTGTGCCATCATTAACCCTCCCCAATCAGGCATTCTGGCAATTGGGTCAGCTGAGAAGAGGGTTGTACCTAGTTCCGGGCCCGAGCAATACAAGTTTGCATCTTTCCTATCTGCAACACTAAGCTGTGATCATCGTGTTATTGACGGTGCAATTGGTGCTGAGTGGCTAAAAGCATTCAAAGGCTACATCGAGAATCCAGAGTCAATGTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

551

Amino Acids

58.89

Weight (kDa)

7.19

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	120 - 191	1.4e-17	Biotin-requiring enzyme
E3_binding	PF02817	259 - 294	7.2e-15	e3 binding domain
2-oxoacid_dh	PF00198	320 - 551	4.5e-79	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	820
AccB1I	GGYRCC	1 cut(s)	820
AccI	GTMKAC	1 cut(s)	1065
AciI	CCGC	5 cut(s)	350, 686, 1126, 1219, 1314
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	1408
AdeI	CACNNNGTG	1 cut(s)	1234
AfaI	GTAC	4 cut(s)	528, 822, 887, 1506
AfiI	CCNNNNNNNGG	6 cut(s)	122, 173, 764, 955, 1466, 1514
AflIII	ACRYGT	1 cut(s)	1058
AjnI	CCWGG	2 cut(s)	227, 442
AjuI	GAANNNNNNNTTGG	2 cut(s)	1455, 1487
AloI	GAACNNNNNNTCC	2 cut(s)	1260, 1292
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	280
AlwNI	CAGNNNCTG	2 cut(s)	638, 719
Ama87I	CYCGRG	2 cut(s)	725, 1520
AoxI	GGCC	6 cut(s)	340, 540, 847, 1087, 1341, 1517
ApaI	GGGCCC	2 cut(s)	544, 1521
ApeKI	GCWGC	7 cut(s)	719, 752, 941, 944, 1157, 1160, 1336
ApoI	RAATTY	1 cut(s)	1408
Asp700I	GAANNNNTTC	1 cut(s)	370
Asp718I	GGTACC	1 cut(s)	820
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	7 cut(s)	540, 541, 848, 1342, 1418, 1517, 1518
AsuC2I	CCSGG	2 cut(s)	851, 1516
AsuHPI	GGTGA	6 cut(s)	217, 372, 440, 458, 577, 656
AvaI	CYCGRG	2 cut(s)	725, 1520
AvaII	GGWCC	1 cut(s)	1418
AxyI	CCTNAGG	1 cut(s)	1185
BaeGI	GKGCMC	3 cut(s)	82, 544, 1521
BaeI	ACNNNNGTAYC	2 cut(s)	1047, 1080
BanI	GGYRCC	1 cut(s)	820
BanII	GRGCYC	2 cut(s)	544, 1521
Bbv12I	GWGCWC	1 cut(s)	456
BbvCI	CCTCAGC	1 cut(s)	807
BbvI	GCAGC	7 cut(s)	706, 764, 928, 956, 1144, 1147, 1323
BccI	CCATC	4 cut(s)	484, 631, 848, 1454
BciT130I	CCWGG	2 cut(s)	229, 444
BclI	TGATCA	2 cut(s)	430, 1567
BcnI	CCSGG	2 cut(s)	851, 1516
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	3 cut(s)	183, 672, 1509
BfmI	CTRYAG	3 cut(s)	480, 942, 1113
BisI	GCNGC	7 cut(s)	720, 753, 942, 945, 1158, 1161, 1337
BlsI	GCNGC	7 cut(s)	721, 754, 943, 946, 1159, 1162, 1338
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	4 cut(s)	229, 444, 851, 1516
Bme18I	GGWCC	1 cut(s)	1418
BmeT110I	CYCGRG	2 cut(s)	725, 1520
BmgT120I	GGNCC	7 cut(s)	540, 541, 848, 1342, 1418, 1517, 1518
BmiI	GGNNCC	4 cut(s)	541, 542, 822, 1519
BmrFI	CCNGG	4 cut(s)	229, 444, 851, 1516
BmrI	ACTGGG	1 cut(s)	741
BmsI	GCATC	7 cut(s)	23, 325, 638, 1224, 1282, 1437, 1547
BmuI	ACTGGG	1 cut(s)	741
BplI	GAGNNNNNCTC	2 cut(s)	1077, 1109
BpmI	CTGGAG	1 cut(s)	786
Bpu10I	CCTNAGC	2 cut(s)	807, 933
BpuEI	CTTGAG	1 cut(s)	814
BpuMI	CCSGG	2 cut(s)	851, 1516
BsaAI	YACGTR	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	1133
BsaJI	CCNNGG	2 cut(s)	544, 1353
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	6 cut(s)	122, 173, 764, 955, 1466, 1514
Bse1I	ACTGG	5 cut(s)	127, 713, 747, 960, 1222
Bse21I	CCTNAGG	1 cut(s)	1185
Bse3DI	GCAATG	1 cut(s)	1100
Bse8I	GATNNNNATC	1 cut(s)	1133
BseBI	CCWGG	2 cut(s)	229, 444
BseDI	CCNNGG	2 cut(s)	544, 1353
BseGI	GGATG	5 cut(s)	24, 859, 969, 1215, 1297
BseJI	GATNNNNATC	1 cut(s)	1133
BseLI	CCNNNNNNNGG	6 cut(s)	122, 173, 764, 955, 1466, 1514
BseMI	GCAATG	1 cut(s)	1100
BseMII	CTCAG	7 cut(s)	384, 798, 995, 1199, 1314, 1482, 1590
BseNI	ACTGG	5 cut(s)	127, 713, 747, 960, 1222
BseRI	GAGGAG	4 cut(s)	189, 331, 747, 1340
BseSI	GKGCMC	3 cut(s)	82, 544, 1521
BseXI	GCAGC	7 cut(s)	706, 764, 928, 956, 1144, 1147, 1323
BseYI	CCCAGC	1 cut(s)	949
BsgI	GTGCAG	2 cut(s)	771, 1274
BshFI	GGCC	6 cut(s)	342, 542, 849, 1089, 1343, 1519
BshNI	GGYRCC	1 cut(s)	820
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	2 cut(s)	725, 1520
BsiSI	CCGG	2 cut(s)	851, 1515
BslFI	GGGAC	3 cut(s)	321, 1320, 1405
BslI	CCNNNNNNNGG	6 cut(s)	122, 173, 764, 955, 1466, 1514
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	3 cut(s)	321, 1320, 1405
BsmI	GAATGC	5 cut(s)	55, 372, 500, 1470, 1613
BsnI	GGCC	6 cut(s)	342, 542, 849, 1089, 1343, 1519
BsoBI	CYCGRG	2 cut(s)	725, 1520
Bsp120I	GGGCCC	2 cut(s)	540, 1517
Bsp1286I	GDGCHC	4 cut(s)	82, 456, 544, 1521
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	7 cut(s)	73, 272, 430, 567, 769, 1141, 1567
BspACI	CCGC	5 cut(s)	350, 686, 1126, 1219, 1314
BspANI	GGCC	6 cut(s)	342, 542, 849, 1089, 1343, 1519
BspCNI	CTCAG	7 cut(s)	385, 799, 994, 1198, 1315, 1483, 1591
BspLI	GGNNCC	4 cut(s)	541, 542, 822, 1519
BspMAI	CTGCAG	1 cut(s)	946
BspPI	GGATC	1 cut(s)	280
BspQI	GCTCTTC	1 cut(s)	1176
BspT107I	GGYRCC	1 cut(s)	820
BsrDI	GCAATG	1 cut(s)	1100
BsrGI	TGTACA	1 cut(s)	526
BsrI	ACTGG	5 cut(s)	127, 713, 747, 960, 1222
BssECI	CCNNGG	2 cut(s)	544, 1353
BssMI	GATC	7 cut(s)	73, 272, 430, 567, 769, 1141, 1567
BssT1I	CCWWGG	2 cut(s)	544, 1353
Bst2UI	CCWGG	2 cut(s)	229, 444
Bst4CI	ACNGT	6 cut(s)	213, 484, 580, 1051, 1402, 1586
Bst6I	CTCTTC	3 cut(s)	876, 1176, 1490
BstAPI	GCANNNNNTGC	2 cut(s)	716, 1595
BstAUI	TGTACA	1 cut(s)	526
BstBAI	YACGTR	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	340, 1091, 1341
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	5 cut(s)	24, 859, 969, 1215, 1297
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	7 cut(s)	76, 275, 433, 570, 772, 1144, 1570
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	7 cut(s)	73, 272, 430, 567, 769, 1141, 1567
BstMWI	GCNNNNNNNGC	8 cut(s)	707, 716, 929, 938, 950, 1166, 1349, 1595
BstNI	CCWGG	2 cut(s)	229, 444
BstNSI	RCATGY	1 cut(s)	1062
BstSCI	CCNGG	4 cut(s)	227, 442, 849, 1514
BstSFI	CTRYAG	3 cut(s)	480, 942, 1113
BstSLI	GKGCMC	3 cut(s)	82, 544, 1521
BstSNI	TACGTA	1 cut(s)	140
BstV1I	GCAGC	7 cut(s)	706, 764, 928, 956, 1144, 1147, 1323
BstXI	CCANNNNNNTGG	1 cut(s)	362
Bsu36I	CCTNAGG	1 cut(s)	1185
BsuRI	GGCC	6 cut(s)	342, 542, 849, 1089, 1343, 1519
BtsCI	GGATG	5 cut(s)	24, 859, 969, 1215, 1297
BtsI	GCAGTG	1 cut(s)	1257
BtsIMutI	CAGTG	5 cut(s)	209, 754, 953, 1257, 1407
Cac8I	GCNNGC	3 cut(s)	340, 1091, 1341
CaiI	CAGNNNCTG	2 cut(s)	638, 719
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	7 cut(s)	540, 541, 848, 1342, 1418, 1517, 1518
Csp6I	GTAC	4 cut(s)	527, 821, 886, 1505
CviAII	CATG	6 cut(s)	71, 155, 297, 499, 1059, 1200
CviQI	GTAC	4 cut(s)	527, 821, 886, 1505
DpnI	GATC	7 cut(s)	75, 274, 432, 569, 771, 1143, 1569
DpnII	GATC	7 cut(s)	73, 272, 430, 567, 769, 1141, 1567
DraIII	CACNNNGTG	1 cut(s)	1234
Eam1104I	CTCTTC	3 cut(s)	876, 1176, 1490
EarI	CTCTTC	3 cut(s)	876, 1176, 1490
EciI	GGCGGA	1 cut(s)	1208
Eco105I	TACGTA	1 cut(s)	140
Eco130I	CCWWGG	2 cut(s)	544, 1353
Eco147I	AGGCCT	1 cut(s)	342
Eco24I	GRGCYC	2 cut(s)	544, 1521
Eco32I	GATATC	2 cut(s)	512, 1131
Eco47I	GGWCC	1 cut(s)	1418
Eco81I	CCTNAGG	1 cut(s)	1185
Eco88I	CYCGRG	2 cut(s)	725, 1520
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	227, 442
EcoRV	GATATC	2 cut(s)	512, 1131
EcoT14I	CCWWGG	2 cut(s)	544, 1353
EcoT22I	ATGCAT	1 cut(s)	500
EcoT38I	GRGCYC	2 cut(s)	544, 1521
ErhI	CCWWGG	2 cut(s)	544, 1353
FaeI	CATG	6 cut(s)	74, 158, 300, 502, 1062, 1203
FaqI	GGGAC	3 cut(s)	321, 1320, 1405
FatI	CATG	6 cut(s)	70, 154, 296, 498, 1058, 1199
FauI	CCCGC	1 cut(s)	693
FbaI	TGATCA	2 cut(s)	430, 1567
FblI	GTMKAC	1 cut(s)	1065
Fnu4HI	GCNGC	7 cut(s)	720, 753, 942, 945, 1158, 1161, 1337
FokI	GGATG	5 cut(s)	11, 866, 956, 1202, 1304
FriOI	GRGCYC	2 cut(s)	544, 1521
Fsp4HI	GCNGC	7 cut(s)	720, 753, 942, 945, 1158, 1161, 1337
FspBI	CTAG	3 cut(s)	183, 672, 1509
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	7 cut(s)	720, 753, 942, 945, 1158, 1161, 1337
GsaI	CCCAGC	1 cut(s)	953
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	6 cut(s)	342, 542, 849, 1089, 1343, 1519
HapII	CCGG	2 cut(s)	851, 1515
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	6 cut(s)	74, 158, 300, 502, 1062, 1203
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	1066
HindII	GTYRAC	1 cut(s)	1066
HinfI	GANTC	5 cut(s)	549, 668, 1180, 1633, 1640
HpaII	CCGG	2 cut(s)	851, 1515
HphI	GGTGA	6 cut(s)	217, 372, 440, 458, 577, 656
Hpy166II	GTNNAC	1 cut(s)	1066
Hpy188I	TCNGA	8 cut(s)	291, 334, 394, 667, 916, 927, 984, 1324
Hpy188III	TCNNGA	6 cut(s)	270, 725, 765, 1005, 1630, 1637
Hpy8I	GTNNAC	1 cut(s)	1066
HpyAV	CCTTC	7 cut(s)	353, 381, 530, 771, 862, 922, 985
HpyCH4III	ACNGT	6 cut(s)	213, 484, 580, 1051, 1402, 1586
HpyCH4IV	ACGT	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	8 cut(s)	707, 716, 929, 938, 950, 1166, 1349, 1595
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	6 cut(s)	74, 158, 300, 502, 1062, 1203
HspAI	GCGC	1 cut(s)	164
KpnI	GGTACC	1 cut(s)	824
Ksp22I	TGATCA	2 cut(s)	430, 1567
Kzo9I	GATC	7 cut(s)	73, 272, 430, 567, 769, 1141, 1567
LguI	GCTCTTC	1 cut(s)	1176
LmnI	GCTCC	4 cut(s)	58, 727, 760, 928
Lsp1109I	GCAGC	7 cut(s)	706, 764, 928, 956, 1144, 1147, 1323
LweI	GCATC	7 cut(s)	23, 325, 638, 1224, 1282, 1437, 1547
MaeI	CTAG	3 cut(s)	183, 672, 1509
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	574, 994
MalI	GATC	7 cut(s)	75, 274, 432, 569, 771, 1143, 1569
MboI	GATC	7 cut(s)	73, 272, 430, 567, 769, 1141, 1567
MboII	GAAGA	7 cut(s)	430, 596, 605, 893, 1163, 1388, 1507
MfeI	CAATTG	3 cut(s)	311, 1479, 1590
MhlI	GDGCHC	4 cut(s)	82, 456, 544, 1521
MluCI	AATT	8 cut(s)	264, 311, 360, 1096, 1408, 1436, 1479, 1590
MlyI	GAGTC	2 cut(s)	662, 1649
Mph1103I	ATGCAT	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	370
MseI	TTAA	5 cut(s)	44, 1242, 1332, 1367, 1452
MslI	CAYNNNNRTG	2 cut(s)	75, 153
MspA1I	CMGCKG	1 cut(s)	1490
MspI	CCGG	2 cut(s)	851, 1515
MspR9I	CCNGG	4 cut(s)	229, 444, 851, 1516
MunI	CAATTG	3 cut(s)	311, 1479, 1590
Mva1269I	GAATGC	5 cut(s)	55, 372, 500, 1470, 1613
MvaI	CCWGG	2 cut(s)	229, 444
MwoI	GCNNNNNNNGC	8 cut(s)	707, 716, 929, 938, 950, 1166, 1349, 1595
NciI	CCSGG	2 cut(s)	851, 1516
NdeII	GATC	7 cut(s)	73, 272, 430, 567, 769, 1141, 1567
NlaIII	CATG	6 cut(s)	74, 158, 300, 502, 1062, 1203
NlaIV	GGNNCC	4 cut(s)	541, 542, 822, 1519
NsiI	ATGCAT	1 cut(s)	500
NspI	RCATGY	1 cut(s)	1062
PceI	AGGCCT	1 cut(s)	342
PciI	ACATGT	1 cut(s)	1058
PciSI	GCTCTTC	1 cut(s)	1176
PcsI	WCGNNNNNNNCGW	1 cut(s)	1071
PctI	GAATGC	5 cut(s)	55, 372, 500, 1470, 1613
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	549, 1180, 1633
PkrI	GCNGC	7 cut(s)	721, 754, 943, 946, 1159, 1162, 1338
PleI	GAGTC	2 cut(s)	662, 1648
PpsI	GAGTC	2 cut(s)	662, 1648
Ppu21I	YACGTR	1 cut(s)	140
PscI	ACATGT	1 cut(s)	1058
Psp6I	CCWGG	2 cut(s)	227, 442
PspFI	CCCAGC	1 cut(s)	949
PspGI	CCWGG	2 cut(s)	227, 442
PspN4I	GGNNCC	4 cut(s)	541, 542, 822, 1519
PspOMI	GGGCCC	2 cut(s)	540, 1517
PspPI	GGNCC	7 cut(s)	540, 541, 848, 1342, 1418, 1517, 1518
PsrI	GAACNNNNNNTAC	2 cut(s)	804, 836
PstI	CTGCAG	1 cut(s)	946
PstNI	CAGNNNCTG	2 cut(s)	638, 719
PvuII	CAGCTG	1 cut(s)	1490
RsaI	GTAC	4 cut(s)	528, 822, 887, 1506
RsaNI	GTAC	4 cut(s)	527, 821, 886, 1505
RseI	CAYNNNNRTG	2 cut(s)	75, 153
SalI	GTCGAC	1 cut(s)	1064
SapI	GCTCTTC	1 cut(s)	1176
SaqAI	TTAA	5 cut(s)	44, 1242, 1332, 1367, 1452
SatI	GCNGC	7 cut(s)	720, 753, 942, 945, 1158, 1161, 1337
Sau3AI	GATC	7 cut(s)	73, 272, 430, 567, 769, 1141, 1567
Sau96I	GGNCC	7 cut(s)	540, 541, 848, 1342, 1418, 1517, 1518
ScaI	AGTACT	1 cut(s)	887
SchI	GAGTC	2 cut(s)	662, 1649
ScrFI	CCNGG	4 cut(s)	229, 444, 851, 1516
SduI	GDGCHC	4 cut(s)	82, 456, 544, 1521
SfaNI	GCATC	7 cut(s)	23, 325, 638, 1224, 1282, 1437, 1547
SfcI	CTRYAG	3 cut(s)	480, 942, 1113
SinI	GGWCC	1 cut(s)	1418
SmiMI	CAYNNNNRTG	2 cut(s)	75, 153
SmlI	CTYRAG	1 cut(s)	829
SmoI	CTYRAG	1 cut(s)	829
SnaBI	TACGTA	1 cut(s)	140
Sse9I	AATT	8 cut(s)	264, 311, 360, 1096, 1408, 1436, 1479, 1590
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	5 cut(s)	350, 686, 1126, 1219, 1314
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	3 cut(s)	183, 672, 1509
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	4 cut(s)	227, 442, 849, 1514
StyI	CCWWGG	2 cut(s)	544, 1353
TaaI	ACNGT	6 cut(s)	213, 484, 580, 1051, 1402, 1586
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	3 cut(s)	1065, 1406, 1629
TasI	AATT	8 cut(s)	264, 311, 360, 1096, 1408, 1436, 1479, 1590
TatI	WGTACW	2 cut(s)	526, 885
TfiI	GAWTC	3 cut(s)	549, 1180, 1633
Tru1I	TTAA	5 cut(s)	44, 1242, 1332, 1367, 1452
Tru9I	TTAA	5 cut(s)	44, 1242, 1332, 1367, 1452
TscAI	CASTG	5 cut(s)	216, 754, 960, 1257, 1407
TseI	GCWGC	7 cut(s)	719, 752, 941, 944, 1157, 1160, 1336
TspDTI	ATGAA	4 cut(s)	137, 263, 285, 1089
TspGWI	ACGGA	3 cut(s)	522, 980, 1003
TspRI	CASTG	5 cut(s)	216, 754, 960, 1257, 1407
VpaK11BI	GGWCC	1 cut(s)	1418
XagI	CCTNNNNNAGG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	1408
XceI	RCATGY	1 cut(s)	1062
XmiI	GTMKAC	1 cut(s)	1065
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	3 cut(s)	183, 672, 1509
ZrmI	AGTACT	1 cut(s)	887
Zsp2I	ATGCAT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.