Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Reverse (-)

36769790 .. 36770864

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG221100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAGTCCAAGGAGAACGGGCCTCTACTACTTGGATATGAATTGCATTCCCGGATTTCTGACTTGTCATCCACGGCGATTGAAGAGCTTTTAGAGCAACAGACACCAACACCGGTGCTTAGACGGTTAGCTGGATTGTTGGCTTGGGAGTCAAAACTCATATTGCATGTATCCGGTTCATCTATTATTGCTGGTATTTTCAATAACCTGCTTGGCTTCGTCACACTTACAATTTATAGCCAGTTGAGTATTGTAGAGCTTGCTGGTGCCTCCATTGCCAATCTTATAATTCAGGGTCTTGCTTATGGAATCATGCTGGGCATGGCAAGTGCTGTGCCAACTGTGTGTGGGCAAGCCTATGGGGCCAAGCAATATTCAGCAATGGGAATCATGTGCCAAAGAGCAATCATCCTGCACTTGGGCGCAGCAGTTCTGCTAACATTTCTGTGTTGGTGGTCAAGCCCCATGCTCGTCGCAATGGGCATATCGGAGACCATAGCCGACCAAGGACAACTGTTTGCGCGTGGCATCATCCCTCAATTCTATGCATTGGCAATAAACTGCCCACAGCAGAGGTTCCTTCAATCACAGAACTCGGTGATTCCTTTGGCTCTCATAGCTGTGGGGACTTTCGTCATACACTTTGTGTGCACTTGGTTGGTGGTTAATGTATTCCACTATGGTGTAATGGGTGCTGCCCTAACGCTCAGTTTCTCTTGGTGGCTACTGGTATTGTTTTCTGGGATTTACATTGGTTTTAGCCCAAAGTGCAAGGAGACTTGGACTGTCTTCTCTTGGAAAGCCTTCACAGGAATGTGGCCTTATTTTAAGTTAACCATTGCCTCTGCTGTCATGCTCTGGTATGGAATCTCAGGTGTAAATTGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

296

Amino Acids

32.36

Weight (kDa)

8.14

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	61 - 220	1.1e-23	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	266
AccII	CGCG	1 cut(s)	523
AdeI	CACNNNGTG	1 cut(s)	646
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	83, 202, 584
AleI	CACNNNNGTG	1 cut(s)	681
AluBI	AGCT	4 cut(s)	88, 131, 259, 620
AluI	AGCT	4 cut(s)	88, 131, 259, 620
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	2 cut(s)	485, 770
Alw44I	GTGCAC	1 cut(s)	649
AoxI	GGCC	3 cut(s)	20, 363, 818
ApaLI	GTGCAC	1 cut(s)	649
ApeKI	GCWGC	2 cut(s)	425, 695
AsiGI	ACCGGT	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	803
AspLEI	GCGC	2 cut(s)	425, 523
AspS9I	GGNCC	2 cut(s)	20, 363
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	610
BaeGI	GKGCMC	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	781
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	437, 682
BceAI	ACGGC	1 cut(s)	90
BciVI	GTATCC	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	485, 770
BfuAI	ACCTGC	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	181
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	2 cut(s)	426, 696
BlsI	GCNGC	2 cut(s)	427, 697
Bme1390I	CCNGG	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	20, 363
BmiI	GGNNCC	3 cut(s)	268, 364, 578
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	537
BoxI	GACNNNNGTC	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	781
BpuMI	CCSGG	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	9, 72, 505
BsaWI	WCCGGW	2 cut(s)	112, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	241, 732
Bse3DI	GCAATG	4 cut(s)	273, 387, 483, 837
BseDI	CCNNGG	3 cut(s)	9, 72, 505
BseGI	GGATG	3 cut(s)	68, 408, 531
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	4 cut(s)	273, 387, 483, 837
BseMII	CTCAG	2 cut(s)	721, 885
BseNI	ACTGG	2 cut(s)	241, 732
BseSI	GKGCMC	1 cut(s)	653
BseXI	GCAGC	2 cut(s)	437, 682
BseYI	CCCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	3 cut(s)	22, 365, 820
BshNI	GGYRCC	1 cut(s)	266
BshTI	ACCGGT	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	653
BsiSI	CCGG	3 cut(s)	52, 113, 174
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	2 cut(s)	485, 770
BsmFI	GGGAC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	3 cut(s)	22, 365, 820
Bso31I	GGTCTC	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	653
BspANI	GGCC	3 cut(s)	22, 365, 820
BspCNI	CTCAG	2 cut(s)	720, 884
BspFNI	CGCG	1 cut(s)	523
BspLI	GGNNCC	3 cut(s)	268, 364, 578
BspMI	ACCTGC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	4 cut(s)	273, 387, 483, 837
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	241, 732
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	9, 72, 505
BssT1I	CCWWGG	2 cut(s)	9, 505
Bst4CI	ACNGT	4 cut(s)	126, 343, 516, 787
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	261, 354
BstDEI	CTNAG	3 cut(s)	119, 707, 871
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	68, 408, 531
BstFNI	CGCG	1 cut(s)	523
BstHHI	GCGC	2 cut(s)	425, 523
BstMAI	GTCTC	2 cut(s)	485, 770
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 275, 362, 617, 768
BstNSI	RCATGY	1 cut(s)	170
BstPAI	GACNNNNGTC	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	653
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	2 cut(s)	437, 682
BstV2I	GAAGAC	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	3 cut(s)	22, 365, 820
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	68, 408, 531
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	261, 354
CfoI	GCGC	2 cut(s)	425, 523
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	20, 363
CspAI	ACCGGT	1 cut(s)	112
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	6 cut(s)	167, 313, 322, 391, 466, 853
DdeI	CTNAG	3 cut(s)	119, 707, 871
DraIII	CACNNNGTG	1 cut(s)	646
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	9, 505
Eco31I	GGTCTC	1 cut(s)	485
EcoT14I	CCWWGG	2 cut(s)	9, 505
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	9, 505
FaeI	CATG	6 cut(s)	170, 316, 325, 394, 469, 856
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	6 cut(s)	166, 312, 321, 390, 465, 852
Fnu4HI	GCNGC	2 cut(s)	426, 696
FokI	GGATG	3 cut(s)	55, 395, 518
Fsp4HI	GCNGC	2 cut(s)	426, 696
GlaI	GCGC	2 cut(s)	424, 522
GluI	GCNGC	2 cut(s)	426, 696
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	3 cut(s)	22, 365, 820
HapII	CCGG	3 cut(s)	52, 113, 174
HhaI	GCGC	2 cut(s)	425, 523
Hin1II	CATG	6 cut(s)	170, 316, 325, 394, 469, 856
Hin6I	GCGC	2 cut(s)	423, 521
HinP1I	GCGC	2 cut(s)	423, 521
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HinfI	GANTC	6 cut(s)	5, 149, 309, 387, 601, 867
HpaI	GTTAAC	1 cut(s)	834
HpaII	CCGG	3 cut(s)	52, 113, 174
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	2 cut(s)	651, 834
Hpy188I	TCNGA	2 cut(s)	61, 490
Hpy8I	GTNNAC	2 cut(s)	651, 834
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	2 cut(s)	590, 814
HpyCH4III	ACNGT	4 cut(s)	126, 343, 516, 787
HpyCH4V	TGCA	7 cut(s)	46, 166, 415, 548, 651, 771, 885
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 275, 362, 617, 768
HpyF3I	CTNAG	3 cut(s)	119, 707, 871
Hsp92II	CATG	6 cut(s)	170, 316, 325, 394, 469, 856
HspAI	GCGC	2 cut(s)	423, 521
KspAI	GTTAAC	1 cut(s)	834
LguI	GCTCTTC	1 cut(s)	78
Lsp1109I	GCAGC	2 cut(s)	437, 682
LweI	GCATC	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	95, 781
MhlI	GDGCHC	1 cut(s)	653
MluCI	AATT	5 cut(s)	41, 231, 288, 539, 880
MlyI	GAGTC	2 cut(s)	14, 158
MnlI	CCTC	5 cut(s)	33, 280, 546, 567, 853
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	803
MseI	TTAA	3 cut(s)	666, 828, 833
MslI	CAYNNNNRTG	4 cut(s)	445, 620, 681, 812
MspI	CCGG	3 cut(s)	52, 113, 174
MspR9I	CCNGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	46
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	5 cut(s)	94, 275, 362, 617, 768
NciI	CCSGG	1 cut(s)	52
NlaIII	CATG	6 cut(s)	170, 316, 325, 394, 469, 856
NlaIV	GGNNCC	3 cut(s)	268, 364, 578
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	681
PciSI	GCTCTTC	1 cut(s)	78
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	803
PfeI	GAWTC	4 cut(s)	309, 387, 601, 867
PfoI	TCCNGGA	1 cut(s)	50
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	427, 697
PleI	GAGTC	2 cut(s)	13, 157
PpsI	GAGTC	2 cut(s)	13, 157
PshAI	GACNNNNGTC	1 cut(s)	632
PsiI	TTATAA	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	316
PspN4I	GGNNCC	3 cut(s)	268, 364, 578
PspPI	GGNCC	2 cut(s)	20, 363
RseI	CAYNNNNRTG	4 cut(s)	445, 620, 681, 812
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	666, 828, 833
SatI	GCNGC	2 cut(s)	426, 696
Sau96I	GGNCC	2 cut(s)	20, 363
SchI	GAGTC	2 cut(s)	14, 158
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	653
SetI	ASST	7 cut(s)	90, 133, 210, 261, 578, 622, 877
SfaNI	GCATC	1 cut(s)	537
SgrAI	CRCCGGYG	1 cut(s)	112
SmiMI	CAYNNNNRTG	4 cut(s)	445, 620, 681, 812
Sse9I	AATT	5 cut(s)	41, 231, 288, 539, 880
SspI	AATATT	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	2 cut(s)	9, 505
TaaI	ACNGT	4 cut(s)	126, 343, 516, 787
TasI	AATT	5 cut(s)	41, 231, 288, 539, 880
TfiI	GAWTC	4 cut(s)	309, 387, 601, 867
Tru1I	TTAA	3 cut(s)	666, 828, 833
Tru9I	TTAA	3 cut(s)	666, 828, 833
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	425, 695
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	54, 168
VneI	GTGCAC	1 cut(s)	649
XceI	RCATGY	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	803
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.