Prupe.3G180200_v2.0.a1

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
19612891 .. 19616643
3753 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G180200.1

Sequence Viewer

Length: 1512 bp
ATGGGGTCGGCGGGGGAGTACCAGCCGCTGCTGCTCGGACTTGACTCACATTCCCAGATACCTGGCTTGTCGTCTGCTGCCATCGAAGAGTTTCTGGAGCACCAGCCTGTGGCAGTCCGATGGTGGCCTAGACTGGTGGCATGGGAGTCAAGGCTGCTCTGGATTTTATCTGGTTCATCTATCATTGTCTCCATATTTAATTACATGCTCAGCTTTGTCACCCTCATGTTTTGTGGCCATTTGAGTGCCTTGGAGCTGGCTGGAGCTTCTATTGCTAGTGTGGGAATTCAAGGTCTTGCTTATGGGATTATGTTGGGAATGGCTAGTGCTGTGCAAACTGTGTGTGGGCAAGCATTTGGAGCCAGAAAATTGCCAGAAATGGGCATCATATGCCAAAAAGCAATCATCTTGCACTTGGGAGCAGCAGTCCTCCTTACATTTCTGTATTGGTGGTCAGGTCCAATACTTATAGCCATAGGCCAGGCAGAAGACATAGCATTGCAGGGCCAAGTGTTTGCAAGGGGCATAATTCCTCAGCTTTATGCATTTGCAATAAACTGCCCCCAACAGAGGTTCCTTCAAGCACAAAACATTGTGAACCCTTTGGCTTACATGTCTGTGGGGGTTTTCCTCATCCACATTCTTCTCACTTGGTTGGTGGTTTATGTTCTGGAATATGGCCTAATGGGGGCTGCTCTTACTCTCAGCCTCTCTTGGTGGCTTCTTGTCATTACATATGGACTTTACATTATTCTAAGCCCCAAGTGCAAGGAAACTTGGACTGGCTTCTCTTGGAATTCCTTCAAAGGAATTTGGCCTTATTTTAAGTTGACTCTTTCTTCTGCTATCATGCTCTGCTTGGAGATATGGTACAACCAGGGGCTGGTGCTGATATCAGGGCTTCTCTCCAATCCTACAATTGCTCTAGACTCCATTTCTATTTGCATGAACTACTTGAACTGGGACATGCAATTCATGTTAGGCCTAAGTGCAGCAGCCAGTGTTCGAGTTAGTAATGAGCTAGGTGCTGGTAACGCAAAGGTGGCCAAATTTTCAGTGTTTGTTGTGAACGGGACCAGCATACTGATTAGCATAGTCTTCAGTGCAATTGTATTGATTTTTAAAGTTGGATTAAGCAAGCTTTTTACGAGTGATTCCGTCGTTATCGCGGCAGTATCTGATTTAACCCCATTGCTGGCCATCTCTGTTTTCTTGAATGGCATTCAACCTATACTCTCAGGGGTGGCAATTGGAAGTGGATGGCAAGCTGTTGTGGCCTATGTTAACCTGACTTGCTACTACATTATCGGTCTTCCAATCGGATGTGTTCTTGGTTTCAAAACCAACATGGGAGTAGCAGGGATTTGGTGGGGGATGATTATTGGAGTTTTTCTACAAACAGTTACTCTAATTATTCTCACCGCCAGAACAAATTGGAATACTGAGGTTGAAAAAGCAGCTGATCGATTGAAGAAAGCTGCAGAAATACCAGACTCGCTGACCGATGTATAA

Protein Analysis

504

Amino Acids

54.61

Weight (kDa)

6.52

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 109, 883
AccII CGCG 1 cut(s) 1169
AciI CCGC 4 cut(s) 11, 26, 1169, 1422
AcoI YGGCCR 3 cut(s) 235, 1044, 1197
AcsI RAATTY 4 cut(s) 285, 796, 810, 1049
AcuI CTGAAG 1 cut(s) 1084
AfaI GTAC 2 cut(s) 20, 872
AfiI CCNNNNNNNGG 6 cut(s) 109, 380, 570, 688, 883, 1195
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 9 cut(s) 290, 581, 805, 958, 1216, 1226, 1339, 1451, 1471
AjnI CCWGG 3 cut(s) 61, 480, 876
AluBI AGCT 9 cut(s) 213, 256, 266, 538, 1021, 1141, 1268, 1460, 1478
AluI AGCT 9 cut(s) 213, 256, 266, 538, 1021, 1141, 1268, 1460, 1478
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 193
AlwNI CAGNNNCTG 3 cut(s) 28, 883, 1178
ApoI RAATTY 4 cut(s) 285, 796, 810, 1049
Asp700I GAANNNNTTC 2 cut(s) 90, 800
AspS9I GGNCC 3 cut(s) 458, 505, 1074
AsuHPI GGTGA 2 cut(s) 211, 1411
AvaII GGWCC 2 cut(s) 458, 1074
BalI TGGCCA 3 cut(s) 237, 1046, 1199
BbsI GAAGAC 3 cut(s) 495, 1090, 1304
Bbv12I GWGCWC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 534
BccI CCATC 4 cut(s) 89, 114, 1208, 1254
BciT130I CCWGG 3 cut(s) 63, 482, 878
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 5 cut(s) 129, 276, 324, 926, 1022
BfmI CTRYAG 1 cut(s) 1479
BlpI GCTNAGC 1 cut(s) 209
Bme1390I CCNGG 3 cut(s) 63, 482, 878
Bme18I GGWCC 2 cut(s) 458, 1074
BmgT120I GGNCC 3 cut(s) 458, 505, 1074
BmiI GGNNCC 3 cut(s) 361, 575, 1075
BmrFI CCNGG 3 cut(s) 63, 482, 878
BmrI ACTGGG 1 cut(s) 970
BmsI GCATC 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 970
BpiI GAAGAC 3 cut(s) 495, 1090, 1304
BpmI CTGGAG 2 cut(s) 116, 282
Bpu10I CCTNAGC 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 1465
BsaJI CCNNGG 2 cut(s) 249, 877
BsaXI ACNNNNNCTCC 4 cut(s) 411, 441, 854, 884
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 380, 570, 688, 883, 1195
Bse1I ACTGG 4 cut(s) 138, 787, 965, 999
Bse3DI GCAATG 2 cut(s) 497, 1190
BseBI CCWGG 3 cut(s) 63, 482, 878
BseCI ATCGAT 1 cut(s) 1465
BseDI CCNNGG 2 cut(s) 249, 877
BseGI GGATG 4 cut(s) 633, 1265, 1328, 1380
BseLI CCNNNNNNNGG 6 cut(s) 109, 380, 570, 688, 883, 1195
BseMI GCAATG 2 cut(s) 497, 1190
BseMII CTCAG 5 cut(s) 223, 548, 718, 1251, 1434
BseNI ACTGG 4 cut(s) 138, 787, 965, 999
BsgI GTGCAG 1 cut(s) 1011
Bsh1236I CGCG 1 cut(s) 1169
BshVI ATCGAT 1 cut(s) 1465
BsiHKAI GWGCWC 1 cut(s) 102
BslFI GGGAC 2 cut(s) 977, 1087
BslI CCNNNNNNNGG 6 cut(s) 109, 380, 570, 688, 883, 1195
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 2 cut(s) 977, 1087
BsmI GAATGC 1 cut(s) 1221
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 1462
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 4 cut(s) 11, 26, 1169, 1422
BspCNI CTCAG 5 cut(s) 222, 547, 717, 1250, 1435
BspDI ATCGAT 1 cut(s) 1465
BspFNI CGCG 1 cut(s) 1169
BspLI GGNNCC 3 cut(s) 361, 575, 1075
BspMAI CTGCAG 1 cut(s) 1483
BsrDI GCAATG 2 cut(s) 497, 1190
BsrI ACTGG 4 cut(s) 138, 787, 965, 999
BssECI CCNNGG 2 cut(s) 249, 877
BssMI GATC 1 cut(s) 1462
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 3 cut(s) 63, 482, 878
Bst4CI ACNGT 2 cut(s) 340, 1402
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 390
BstC8I GCNNGC 5 cut(s) 258, 351, 1139, 1197, 1266
BstDEI CTNAG 7 cut(s) 209, 534, 704, 755, 986, 1237, 1443
BstF5I GGATG 4 cut(s) 633, 1265, 1328, 1380
BstFNI CGCG 1 cut(s) 1169
BstKTI GATC 1 cut(s) 1465
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 1462
BstMWI GCNNNNNNNGC 8 cut(s) 31, 272, 359, 390, 765, 1034, 1043, 1274
BstNI CCWGG 3 cut(s) 63, 482, 878
BstNSI RCATGY 3 cut(s) 208, 616, 970
BstSCI CCNGG 3 cut(s) 61, 480, 876
BstSFI CTRYAG 1 cut(s) 1479
BstUI CGCG 1 cut(s) 1169
BstV2I GAAGAC 3 cut(s) 495, 1090, 1304
BstXI CCANNNNNNTGG 1 cut(s) 62
Bsu15I ATCGAT 1 cut(s) 1465
BsuTUI ATCGAT 1 cut(s) 1465
BtsCI GGATG 4 cut(s) 633, 1265, 1328, 1380
BtsIMutI CAGTG 3 cut(s) 1006, 1062, 1108
Cac8I GCNNGC 5 cut(s) 258, 351, 1139, 1197, 1266
CaiI CAGNNNCTG 3 cut(s) 28, 883, 1178
Cfr13I GGNCC 3 cut(s) 458, 505, 1074
ClaI ATCGAT 1 cut(s) 1465
Csp6I GTAC 2 cut(s) 19, 871
CviAII CATG 9 cut(s) 141, 205, 226, 613, 850, 946, 967, 976, 1348
CviQI GTAC 2 cut(s) 19, 871
DdeI CTNAG 7 cut(s) 209, 534, 704, 755, 986, 1237, 1443
DpnI GATC 1 cut(s) 1464
DpnII GATC 1 cut(s) 1462
DraI TTTAAA 1 cut(s) 1123
EaeI YGGCCR 3 cut(s) 235, 1044, 1197
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 984
Eco32I GATATC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 458, 1074
Eco57I CTGAAG 1 cut(s) 1084
EcoRI GAATTC 2 cut(s) 285, 796
EcoRII CCWGG 3 cut(s) 61, 480, 876
EcoRV GATATC 1 cut(s) 894
EcoT14I CCWWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 9 cut(s) 144, 208, 229, 616, 853, 949, 970, 979, 1351
FaqI GGGAC 2 cut(s) 977, 1087
FatI CATG 9 cut(s) 140, 204, 225, 612, 849, 945, 966, 975, 1347
FauI CCCGC 1 cut(s) 4
FauNDI CATATG 2 cut(s) 389, 736
FokI GGATG 4 cut(s) 620, 1272, 1335, 1387
FspBI CTAG 5 cut(s) 129, 276, 324, 926, 1022
GsuI CTGGAG 2 cut(s) 116, 282
Hin1II CATG 9 cut(s) 144, 208, 229, 616, 853, 949, 970, 979, 1351
HincII GTYRAC 2 cut(s) 831, 1285
HindII GTYRAC 2 cut(s) 831, 1285
HindIII AAGCTT 1 cut(s) 1139
HinfI GANTC 6 cut(s) 44, 146, 832, 929, 1154, 1493
HpaI GTTAAC 1 cut(s) 1285
HphI GGTGA 2 cut(s) 211, 1411
Hpy166II GTNNAC 4 cut(s) 598, 831, 1069, 1285
Hpy188I TCNGA 4 cut(s) 38, 119, 1180, 1322
Hpy188III TCNNGA 5 cut(s) 95, 160, 671, 926, 1213
Hpy8I GTNNAC 4 cut(s) 598, 831, 1069, 1285
Hpy99I CGWCG 1 cut(s) 1163
HpyAV CCTTC 2 cut(s) 587, 811
HpyCH4III ACNGT 2 cut(s) 340, 1402
HpyF10VI GCNNNNNNNGC 8 cut(s) 31, 272, 359, 390, 765, 1034, 1043, 1274
HpyF3I CTNAG 7 cut(s) 209, 534, 704, 755, 986, 1237, 1443
Hsp92II CATG 9 cut(s) 144, 208, 229, 616, 853, 949, 970, 979, 1351
KspAI GTTAAC 1 cut(s) 1285
Kzo9I GATC 1 cut(s) 1462
LmnI GCTCC 5 cut(s) 97, 253, 263, 359, 419
LweI GCATC 1 cut(s) 393
MaeI CTAG 5 cut(s) 129, 276, 324, 926, 1022
MaeIII GTNAC 3 cut(s) 217, 1031, 1402
MalI GATC 1 cut(s) 1464
MboI GATC 1 cut(s) 1462
MboII GAAGA 7 cut(s) 98, 500, 635, 831, 1090, 1304, 1483
MfeI CAATTG 3 cut(s) 918, 1107, 1248
MhlI GDGCHC 1 cut(s) 102
MlsI TGGCCA 3 cut(s) 237, 1046, 1199
MluNI TGGCCA 3 cut(s) 237, 1046, 1199
MlyI GAGTC 5 cut(s) 38, 155, 826, 923, 1487
MmeI TCCRAC 1 cut(s) 1108
MnlI CCTC 7 cut(s) 233, 440, 543, 564, 641, 719, 1438
Mox20I TGGCCA 3 cut(s) 237, 1046, 1199
Mph1103I ATGCAT 1 cut(s) 547
MroXI GAANNNNTTC 2 cut(s) 90, 800
MscI TGGCCA 3 cut(s) 237, 1046, 1199
MseI TTAA 6 cut(s) 198, 825, 1122, 1133, 1184, 1284
MslI CAYNNNNRTG 3 cut(s) 224, 243, 617
Msp20I TGGCCA 3 cut(s) 237, 1046, 1199
MspA1I CMGCKG 2 cut(s) 28, 1460
MspR9I CCNGG 3 cut(s) 63, 482, 878
MunI CAATTG 3 cut(s) 918, 1107, 1248
Mva1269I GAATGC 1 cut(s) 1221
MvaI CCWGG 3 cut(s) 63, 482, 878
MvnI CGCG 1 cut(s) 1169
MwoI GCNNNNNNNGC 8 cut(s) 31, 272, 359, 390, 765, 1034, 1043, 1274
NdeI CATATG 2 cut(s) 389, 736
NdeII GATC 1 cut(s) 1462
NlaIII CATG 9 cut(s) 144, 208, 229, 616, 853, 949, 970, 979, 1351
NlaIV GGNNCC 3 cut(s) 361, 575, 1075
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 3 cut(s) 208, 616, 970
PceI AGGCCT 1 cut(s) 984
PciI ACATGT 1 cut(s) 612
PctI GAATGC 1 cut(s) 1221
PdmI GAANNNNTTC 2 cut(s) 90, 800
PfeI GAWTC 1 cut(s) 1154
PflMI CCANNNNNTGG 2 cut(s) 109, 883
PleI GAGTC 5 cut(s) 38, 154, 826, 923, 1487
PpsI GAGTC 5 cut(s) 38, 154, 826, 923, 1487
PscI ACATGT 1 cut(s) 612
Psp6I CCWGG 3 cut(s) 61, 480, 876
PspGI CCWGG 3 cut(s) 61, 480, 876
PspN4I GGNNCC 3 cut(s) 361, 575, 1075
PspPI GGNCC 3 cut(s) 458, 505, 1074
PstI CTGCAG 1 cut(s) 1483
PstNI CAGNNNCTG 3 cut(s) 28, 883, 1178
PvuII CAGCTG 1 cut(s) 1460
RsaI GTAC 2 cut(s) 20, 872
RsaNI GTAC 2 cut(s) 19, 871
RseI CAYNNNNRTG 3 cut(s) 224, 243, 617
SaqAI TTAA 6 cut(s) 198, 825, 1122, 1133, 1184, 1284
Sau3AI GATC 1 cut(s) 1462
Sau96I GGNCC 3 cut(s) 458, 505, 1074
SchI GAGTC 5 cut(s) 38, 155, 826, 923, 1487
ScrFI CCNGG 3 cut(s) 63, 482, 878
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 1479
SinI GGWCC 2 cut(s) 458, 1074
SmiMI CAYNNNNRTG 3 cut(s) 224, 243, 617
SseBI AGGCCT 1 cut(s) 984
SsiI CCGC 4 cut(s) 11, 26, 1169, 1422
SspMI CTAG 5 cut(s) 129, 276, 324, 926, 1022
StuI AGGCCT 1 cut(s) 984
StyD4I CCNGG 3 cut(s) 61, 480, 876
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 340, 1402
TaqI TCGA 3 cut(s) 84, 1006, 1465
TaqII GACCGA 1 cut(s) 1298
TauI GCSGC 2 cut(s) 28, 1172
TfiI GAWTC 1 cut(s) 1154
Tru1I TTAA 6 cut(s) 198, 825, 1122, 1133, 1184, 1284
Tru9I TTAA 6 cut(s) 198, 825, 1122, 1133, 1184, 1284
TscAI CASTG 3 cut(s) 1006, 1062, 1108
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 165, 962, 964
TspGWI ACGGA 1 cut(s) 1147
TspRI CASTG 3 cut(s) 1006, 1062, 1108
Van91I CCANNNNNTGG 2 cut(s) 109, 883
VpaK11BI GGWCC 2 cut(s) 458, 1074
XapI RAATTY 4 cut(s) 285, 796, 810, 1049
XbaI TCTAGA 1 cut(s) 925
XceI RCATGY 3 cut(s) 208, 616, 970
XmnI GAANNNNTTC 2 cut(s) 90, 800
XspI CTAG 5 cut(s) 129, 276, 324, 926, 1022
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.