Rh2CG232400

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005555
Physical Location & Seq
Forward (+)
23609690 .. 23616542
6853 bp
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UTR
Exon/CDS
Intron
Rh2CG232400.1

Sequence Viewer

Length: 330 bp
ATGGCTATGTCCTGCACGGATGGTAAAGGAGTAATGGATAATGGCAAGTATGTGAGGTACAAACCTGAGCAGGTTGCTGAAGCCCTTGAGAGGCTTTATCATGAATTCCCCAAACCCAGTTCGATTAGTCGCCAACAGCTCATTAAGGAGTACCCAATTATCCCTAACATTGAGCCTAGCCAAATCAAAGTTTGGTTCCAGAACAGAAGGCCACCGGCGGAGATTCCTGAGGCATGGAAGGGTTTATCAATACAGAGTTTTGTCTTACGCCACGGGATATATATAAATAACAATATACTTAACTCGCTCACCCCTTTTTGCAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox MEKHLA START

Protein Analysis

109

Amino Acids

12.62

Weight (kDa)

9.2

Isoelectric Point (pI)

70.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 17 - 70 4.5e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 61
AciI CCGC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 59, 152
AfiI CCNNNNNNNGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AoxI GGCC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 301
AxyI CCTNAGG 1 cut(s) 228
BccI CCATC 1 cut(s) 14
BfaI CTAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 197
BmrI ACTGGG 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 117
Bse21I CCTNAGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 57, 219
BseNI ACTGG 1 cut(s) 117
BshFI GGCC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 90
BsnI GGCC 1 cut(s) 211
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 2 cut(s) 58, 220
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 197
BspMI ACCTGC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 66, 228
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 61
CciI TCATGA 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 214
Csp6I GTAC 2 cut(s) 58, 151
CviAII CATG 2 cut(s) 101, 234
CviJI RGCY 7 cut(s) 5, 83, 94, 139, 175, 180, 211
CviKI_1 RGCY 7 cut(s) 5, 83, 94, 139, 175, 180, 211
CviQI GTAC 2 cut(s) 58, 151
DdeI CTNAG 2 cut(s) 66, 228
EciI GGCGGA 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 104
FaeI CATG 2 cut(s) 104, 237
FaiI YATR 8 cut(s) 8, 51, 102, 235, 280, 282, 284, 296
FatI CATG 2 cut(s) 100, 233
FokI GGATG 1 cut(s) 32
FspBI CTAG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 211
HapII CCGG 1 cut(s) 215
Hin1II CATG 2 cut(s) 104, 237
HinfI GANTC 1 cut(s) 223
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 301
Hpy188III TCNNGA 3 cut(s) 101, 199, 227
HpyAV CCTTC 2 cut(s) 201, 232
HpyCH4V TGCA 2 cut(s) 15, 321
HpyF3I CTNAG 2 cut(s) 66, 228
Hsp92II CATG 2 cut(s) 104, 237
LpnPI CCDG 7 cut(s) 25, 56, 78, 130, 212, 228, 240
MaeI CTAG 1 cut(s) 177
MluCI AATT 2 cut(s) 104, 156
MnlI CCTC 3 cut(s) 48, 84, 223
MseI TTAA 2 cut(s) 144, 300
MspI CCGG 1 cut(s) 215
NlaIII CATG 2 cut(s) 104, 237
NlaIV GGNNCC 1 cut(s) 197
PagI TCATGA 1 cut(s) 100
PfeI GAWTC 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 197
RsaI GTAC 2 cut(s) 59, 152
RsaNI GTAC 2 cut(s) 58, 151
SaqAI TTAA 2 cut(s) 144, 300
SetI ASST 4 cut(s) 59, 67, 75, 141
SgrAI CRCCGGYG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 104, 156
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 177
TaqI TCGA 1 cut(s) 122
TasI AATT 2 cut(s) 104, 156
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 144, 300
Tru9I TTAA 2 cut(s) 144, 300
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 32
XapI RAATTY 1 cut(s) 104
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.