Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005555

Physical Location & Seq

Genomic Coordinates Forward (+)

32952210 .. 32964763

Gene Structure 12554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG263300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATATCGATTCGCCTTGGCTCAGGAAAAACCAGAATGCTTTCTGGTCTTTCAAGAACCAGAAGCTCGATATTCTTCGCATTCTTCATTTTGCTTCACCTTCATTTCCAAACCATTTAGTTCGGACAGCCAAAAAGACTCAGTCAAGTTTTCTAAATAAAGAGGGACAGATATGTCCGTCTCTTGCGTTGTGGCCTGCATCGTGTCTTGTGCTTTTGAGTAGGCTTCTCACTCCCCCAGAAACTCCACTTTTCCTTTCATCAGATGGAAGTGAATCTCAACCAACCTTAGCTGCTGCAAGAAGCAGTGCTTTAAATAGATCAACTTCCTCAGCCAAGCCTTCAAGGAAGCTGAATGCCATAGCTTGTGCCTCAGAAACTTGTGCAAGAATTCCAAGATGCGTATCTACTGATCAAATTACTGCAATTCAGGAAGCTTACTGGAGTATGGCATCTGCCCTCTCTGAAGCTGATGGAATTGACTATACTGATCCTGAAGAGCTTGAGTTGTTAATTGCAACTCTTATAGATCTTGATGCCATGGATGGTAAAAGTAGTGTATCCTTGTTGGCAGAGTGTTCTAGTTCCCCTGATGTCAATACTAGGCAAGCATTAGCTAATGCTTTGGCTGCAGCTCCATCTATGTGGACGTTGGGTAATGCAGGAATGGGAGCCTTGCAGGAAATTAAAAACCGAACCATTGCAAGAAAGAAATCACTAGGAGAAGATCCAAAGAGAAGGTCAGCTCACCTTTGGGGTAAAGATAAAATTTTGAAATTTCACCAGGAGAATGAGAGCAGCTGCAAAAGGCGCTCAATCATATTCATTGGCTTCTGTTGTTCTCTGCTAAAAAAGAATCGAACCTGCTATCCAACACAACATTGGCAACAACTATATGAACCAATGTATAAAAATCATACCAGACAGCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010150 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0072593 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

34.6

Weight (kDa)

9.07

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005555)

Species	Orthologous Gene IDs
pyrus_communis	pycom110g00030
rosa_chinensis	RchiOBHm_Chr1g0322901 RchiOBHm_Chr2g0111751 RchiOBHm_Chr2g0164871 RchiOBHm_Chr5g0028331 RchiOBHm_Chr6g0258951
rosa_multiflora	Rmu_sc0006010.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030400
rosa_rugosa	Rorug06G0249500 Rorug06G0249500 Rorug06G0249600
rosa_samantha	Rh1BG244300 Rh2CG232400 Rh2CG295900 Rh2DG332800 Rh3AG253200 Rh3AG309200 Rh3AG310800 Rh3BG355500 Rh3CG342500 Rh4AG132400 Rh5AG356000 Rh5BG260900 Rh5BG263300 Rh5BG491200 Rh5CG515000 Rh5DG386200 Rh6BG167200 Rh6BG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	174
Acc36I	ACCTGC	1 cut(s)	872
AclWI	GGATC	2 cut(s)	485, 722
AcsI	RAATTY	3 cut(s)	390, 768, 776
AcuI	CTGAAG	2 cut(s)	486, 516
AgsI	TTSAA	3 cut(s)	55, 345, 775
AjnI	CCWGG	1 cut(s)	783
AloI	GAACNNNNNNTCC	2 cut(s)	853, 885
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	485, 722
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	6 cut(s)	293, 296, 629, 632, 798, 801
ApoI	RAATTY	3 cut(s)	390, 768, 776
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	813
AsuHPI	GGTGA	3 cut(s)	90, 740, 773
BbvCI	CCTCAGC	1 cut(s)	331
BbvI	GCAGC	6 cut(s)	280, 283, 616, 644, 788, 810
BccI	CCATC	4 cut(s)	260, 467, 539, 646
BciT130I	CCWGG	1 cut(s)	785
BciVI	GTATCC	1 cut(s)	571
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	3 cut(s)	582, 603, 719
BfmI	CTRYAG	1 cut(s)	630
BfoI	RGCGCY	1 cut(s)	814
BfuAI	ACCTGC	1 cut(s)	872
BfuI	GTATCC	1 cut(s)	571
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	6 cut(s)	294, 297, 630, 633, 799, 802
BlsI	GCNGC	6 cut(s)	295, 298, 631, 634, 800, 803
Bme1390I	CCNGG	1 cut(s)	785
BmiI	GGNNCC	1 cut(s)	673
BmrFI	CCNGG	1 cut(s)	785
BmsI	GCATC	4 cut(s)	209, 389, 461, 526
BpmI	CTGGAG	1 cut(s)	463
Bpu10I	CCTNAGC	3 cut(s)	23, 289, 331
BpuEI	CTTGAG	1 cut(s)	524
Bsa29I	ATCGAT	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	17, 540
Bse1I	ACTGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	699
Bse8I	GATNNNNATC	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	785
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	17, 540
BseGI	GGATG	1 cut(s)	550
BseJI	GATNNNNATC	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	4 cut(s)	37, 155, 345, 387
BseNI	ACTGG	1 cut(s)	446
BseXI	GCAGC	6 cut(s)	280, 283, 616, 644, 788, 810
BshFI	GGCC	1 cut(s)	196
BshVI	ATCGAT	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	186
BsmBI	CGTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	180
BsmI	GAATGC	3 cut(s)	43, 81, 361
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	5 cut(s)	320, 412, 490, 529, 727
Bsp19I	CCATGG	1 cut(s)	540
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	4 cut(s)	36, 154, 344, 386
BspDI	ATCGAT	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	673
BspMAI	CTGCAG	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	872
BspPI	GGATC	2 cut(s)	485, 722
BspQI	GCTCTTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	17, 540
BssMI	GATC	5 cut(s)	320, 412, 490, 529, 727
BssT1I	CCWWGG	2 cut(s)	17, 540
Bst2UI	CCWGG	1 cut(s)	785
Bst6I	CTCTTC	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	198, 609
BstDEI	CTNAG	5 cut(s)	23, 141, 289, 331, 373
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	814
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	5 cut(s)	323, 415, 493, 532, 730
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	5 cut(s)	320, 412, 490, 529, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	629, 810
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	783
BstSFI	CTRYAG	1 cut(s)	630
BstV1I	GCAGC	6 cut(s)	280, 283, 616, 644, 788, 810
BstX2I	RGATCY	2 cut(s)	529, 727
BstXI	CCANNNNNNTGG	1 cut(s)	645
BstYI	RGATCY	2 cut(s)	529, 727
Bsu15I	ATCGAT	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	196
BsuTUI	ATCGAT	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	1 cut(s)	872
Cac8I	GCNNGC	2 cut(s)	198, 609
CfoI	GCGC	1 cut(s)	813
ClaI	ATCGAT	1 cut(s)	9
CviAII	CATG	1 cut(s)	541
DdeI	CTNAG	5 cut(s)	23, 141, 289, 331, 373
DpnI	GATC	5 cut(s)	322, 414, 492, 531, 729
DpnII	GATC	5 cut(s)	320, 412, 490, 529, 727
DraI	TTTAAA	1 cut(s)	315
DrdI	GACNNNNNNGTC	1 cut(s)	174
DseDI	GACNNNNNNGTC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco130I	CCWWGG	2 cut(s)	17, 540
Eco32I	GATATC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	486, 516
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	783
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	2 cut(s)	17, 540
ErhI	CCWWGG	2 cut(s)	17, 540
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	1 cut(s)	544
FalI	AAGNNNNNCTT	2 cut(s)	295, 327
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	540
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	6 cut(s)	294, 297, 630, 633, 799, 802
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	6 cut(s)	294, 297, 630, 633, 799, 802
FspBI	CTAG	3 cut(s)	582, 603, 719
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	6 cut(s)	294, 297, 630, 633, 799, 802
GsuI	CTGGAG	1 cut(s)	463
HaeII	RGCGCY	1 cut(s)	814
HaeIII	GGCC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	1 cut(s)	544
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	4 cut(s)	11, 139, 275, 856
HphI	GGTGA	3 cut(s)	90, 740, 773
Hpy166II	GTNNAC	1 cut(s)	648
Hpy188I	TCNGA	4 cut(s)	126, 265, 376, 466
Hpy188III	TCNNGA	5 cut(s)	25, 55, 431, 494, 533
Hpy8I	GTNNAC	1 cut(s)	648
HpyAV	CCTTC	3 cut(s)	111, 351, 732
HpyCH4IV	ACGT	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	629, 810
HpyF3I	CTNAG	5 cut(s)	23, 141, 289, 331, 373
HpySE526I	ACGT	1 cut(s)	650
Hsp92II	CATG	1 cut(s)	544
HspAI	GCGC	1 cut(s)	811
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	5 cut(s)	320, 412, 490, 529, 727
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	2 cut(s)	640, 671
Lsp1109I	GCAGC	6 cut(s)	280, 283, 616, 644, 788, 810
LweI	GCATC	4 cut(s)	209, 389, 461, 526
MaeI	CTAG	3 cut(s)	582, 603, 719
MaeII	ACGT	1 cut(s)	650
MalI	GATC	5 cut(s)	322, 414, 492, 531, 729
MboI	GATC	5 cut(s)	320, 412, 490, 529, 727
MboII	GAAGA	4 cut(s)	68, 77, 509, 737
MflI	RGATCY	2 cut(s)	529, 727
MluCI	AATT	8 cut(s)	390, 417, 426, 477, 513, 684, 768, 776
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	896
MnlI	CCTC	4 cut(s)	157, 340, 382, 470
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	3 cut(s)	314, 512, 687
MslI	CAYNNNNRTG	1 cut(s)	643
MspA1I	CMGCKG	1 cut(s)	801
MspR9I	CCNGG	1 cut(s)	785
Mva1269I	GAATGC	3 cut(s)	43, 81, 361
MvaI	CCWGG	1 cut(s)	785
MwoI	GCNNNNNNNGC	2 cut(s)	629, 810
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	5 cut(s)	320, 412, 490, 529, 727
NlaIII	CATG	1 cut(s)	544
NlaIV	GGNNCC	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	492
PctI	GAATGC	3 cut(s)	43, 81, 361
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	11, 275, 856
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	6 cut(s)	295, 298, 631, 634, 800, 803
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	783
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	1 cut(s)	673
PstI	CTGCAG	1 cut(s)	634
PsuI	RGATCY	2 cut(s)	529, 727
PsyI	GACNNNGTC	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	801
RseI	CAYNNNNRTG	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	314, 512, 687
SatI	GCNGC	6 cut(s)	294, 297, 630, 633, 799, 802
Sau3AI	GATC	5 cut(s)	320, 412, 490, 529, 727
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	785
SfaNI	GCATC	4 cut(s)	209, 389, 461, 526
SfcI	CTRYAG	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	643
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	8 cut(s)	390, 417, 426, 477, 513, 684, 768, 776
SspMI	CTAG	3 cut(s)	582, 603, 719
StyD4I	CCNGG	1 cut(s)	783
StyI	CCWWGG	2 cut(s)	17, 540
TaiI	ACGT	1 cut(s)	653
TaqI	TCGA	3 cut(s)	9, 69, 859
TasI	AATT	8 cut(s)	390, 417, 426, 477, 513, 684, 768, 776
TfiI	GAWTC	3 cut(s)	11, 275, 856
Tru1I	TTAA	3 cut(s)	314, 512, 687
Tru9I	TTAA	3 cut(s)	314, 512, 687
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	6 cut(s)	293, 296, 629, 632, 798, 801
TspDTI	ATGAA	5 cut(s)	77, 93, 249, 814, 912
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	313
Tth111I	GACNNNGTC	1 cut(s)	142
XapI	RAATTY	3 cut(s)	390, 768, 776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	879
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	3 cut(s)	582, 603, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.