Autophagy-related protein
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom110g00030 |
| rosa_chinensis | RchiOBHm_Chr1g0322901 RchiOBHm_Chr2g0111751 RchiOBHm_Chr2g0164871 RchiOBHm_Chr5g0028331 RchiOBHm_Chr6g0258951 |
| rosa_multiflora | Rmu_sc0006010.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00030400 |
| rosa_rugosa | Rorug06G0249500 Rorug06G0249500 Rorug06G0249600 |
| rosa_samantha | Rh1BG244300 Rh2CG232400 Rh2CG295900 Rh2DG332800 Rh3AG253200 Rh3AG309200 Rh3AG310800 Rh3BG355500 Rh3CG342500 Rh4AG132400 Rh5AG356000 Rh5BG260900 Rh5BG263300 Rh5BG491200 Rh5CG515000 Rh5DG386200 Rh6BG167200 Rh6BG273500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 61 |
| AccII | CGCG | 1 cut(s) | 370 |
| AciI | CCGC | 1 cut(s) | 368 |
| AfaI | GTAC | 1 cut(s) | 50 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 87 |
| AgsI | TTSAA | 7 cut(s) | 77, 238, 247, 305, 388, 421, 435 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 267, 299 |
| AluBI | AGCT | 3 cut(s) | 281, 318, 344 |
| AluI | AGCT | 3 cut(s) | 281, 318, 344 |
| Alw26I | GTCTC | 2 cut(s) | 256, 380 |
| AspS9I | GGNCC | 1 cut(s) | 57 |
| AsuHPI | GGTGA | 1 cut(s) | 359 |
| AvaII | GGWCC | 1 cut(s) | 57 |
| BaeGI | GKGCMC | 1 cut(s) | 152 |
| BccI | CCATC | 2 cut(s) | 224, 364 |
| BcoDI | GTCTC | 2 cut(s) | 256, 380 |
| BfaI | CTAG | 1 cut(s) | 321 |
| BfmI | CTRYAG | 1 cut(s) | 13 |
| BfuAI | ACCTGC | 1 cut(s) | 61 |
| Bme18I | GGWCC | 1 cut(s) | 57 |
| BmgT120I | GGNCC | 1 cut(s) | 57 |
| BmiI | GGNNCC | 1 cut(s) | 194 |
| BmrI | ACTGGG | 1 cut(s) | 108 |
| BmuI | ACTGGG | 1 cut(s) | 108 |
| BpuEI | CTTGAG | 2 cut(s) | 86, 104 |
| BsaAI | YACGTR | 1 cut(s) | 52 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 87 |
| Bse1I | ACTGG | 1 cut(s) | 114 |
| BseGI | GGATG | 1 cut(s) | 235 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 87 |
| BseNI | ACTGG | 1 cut(s) | 114 |
| BseSI | GKGCMC | 1 cut(s) | 152 |
| Bsh1236I | CGCG | 1 cut(s) | 370 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 87 |
| BsmAI | GTCTC | 2 cut(s) | 256, 380 |
| BsmBI | CGTCTC | 1 cut(s) | 380 |
| BsmI | GAATGC | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 1 cut(s) | 152 |
| BspACI | CCGC | 1 cut(s) | 368 |
| BspFNI | CGCG | 1 cut(s) | 370 |
| BspLI | GGNNCC | 1 cut(s) | 194 |
| BspMAI | CTGCAG | 1 cut(s) | 17 |
| BspMI | ACCTGC | 1 cut(s) | 61 |
| BspQI | GCTCTTC | 2 cut(s) | 345, 414 |
| BsrI | ACTGG | 1 cut(s) | 114 |
| Bst6I | CTCTTC | 2 cut(s) | 345, 414 |
| BstBAI | YACGTR | 1 cut(s) | 52 |
| BstF5I | GGATG | 1 cut(s) | 235 |
| BstFNI | CGCG | 1 cut(s) | 370 |
| BstMAI | GTCTC | 2 cut(s) | 256, 380 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 21, 287 |
| BstSFI | CTRYAG | 1 cut(s) | 13 |
| BstSLI | GKGCMC | 1 cut(s) | 152 |
| BstUI | CGCG | 1 cut(s) | 370 |
| BtsCI | GGATG | 1 cut(s) | 235 |
| BveI | ACCTGC | 1 cut(s) | 61 |
| Cfr13I | GGNCC | 1 cut(s) | 57 |
| CseI | GACGC | 1 cut(s) | 359 |
| Csp6I | GTAC | 1 cut(s) | 49 |
| CviQI | GTAC | 1 cut(s) | 49 |
| Eam1104I | CTCTTC | 2 cut(s) | 345, 414 |
| EarI | CTCTTC | 2 cut(s) | 345, 414 |
| Eco47I | GGWCC | 1 cut(s) | 57 |
| Esp3I | CGTCTC | 1 cut(s) | 380 |
| FaiI | YATR | 6 cut(s) | 8, 218, 273, 397, 399, 452 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 218, 250 |
| FauNDI | CATATG | 1 cut(s) | 397 |
| FokI | GGATG | 1 cut(s) | 242 |
| FspBI | CTAG | 1 cut(s) | 321 |
| HgaI | GACGC | 1 cut(s) | 359 |
| HinfI | GANTC | 1 cut(s) | 264 |
| HphI | GGTGA | 1 cut(s) | 359 |
| Hpy188III | TCNNGA | 4 cut(s) | 60, 98, 196, 413 |
| Hpy99I | CGWCG | 1 cut(s) | 375 |
| HpyAV | CCTTC | 1 cut(s) | 335 |
| HpyCH4IV | ACGT | 1 cut(s) | 51 |
| HpyCH4V | TGCA | 1 cut(s) | 15 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 21, 287 |
| HpySE526I | ACGT | 1 cut(s) | 51 |
| LguI | GCTCTTC | 2 cut(s) | 345, 414 |
| LmnI | GCTCC | 1 cut(s) | 341 |
| LpnPI | CCDG | 6 cut(s) | 25, 56, 73, 127, 209, 330 |
| MaeI | CTAG | 1 cut(s) | 321 |
| MaeII | ACGT | 1 cut(s) | 51 |
| MboII | GAAGA | 2 cut(s) | 362, 401 |
| MhlI | GDGCHC | 1 cut(s) | 152 |
| MluCI | AATT | 3 cut(s) | 153, 247, 416 |
| MlyI | GAGTC | 1 cut(s) | 258 |
| MmeI | TCCRAC | 1 cut(s) | 319 |
| MnlI | CCTC | 2 cut(s) | 48, 81 |
| MseI | TTAA | 1 cut(s) | 141 |
| Mva1269I | GAATGC | 1 cut(s) | 107 |
| MvnI | CGCG | 1 cut(s) | 370 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 21, 287 |
| NdeI | CATATG | 1 cut(s) | 397 |
| NlaIV | GGNNCC | 1 cut(s) | 194 |
| PciSI | GCTCTTC | 2 cut(s) | 345, 414 |
| PctI | GAATGC | 1 cut(s) | 107 |
| PleI | GAGTC | 1 cut(s) | 258 |
| PpsI | GAGTC | 1 cut(s) | 258 |
| Ppu21I | YACGTR | 1 cut(s) | 52 |
| PspN4I | GGNNCC | 1 cut(s) | 194 |
| PspPI | GGNCC | 1 cut(s) | 57 |
| PstI | CTGCAG | 1 cut(s) | 17 |
| RsaI | GTAC | 1 cut(s) | 50 |
| RsaNI | GTAC | 1 cut(s) | 49 |
| SapI | GCTCTTC | 2 cut(s) | 345, 414 |
| SaqAI | TTAA | 1 cut(s) | 141 |
| Sau96I | GGNCC | 1 cut(s) | 57 |
| SbfI | CCTGCAGG | 1 cut(s) | 17 |
| SchI | GAGTC | 1 cut(s) | 258 |
| SdaI | CCTGCAGG | 1 cut(s) | 17 |
| SduI | GDGCHC | 1 cut(s) | 152 |
| SetI | ASST | 7 cut(s) | 54, 59, 75, 283, 320, 346, 467 |
| SfcI | CTRYAG | 1 cut(s) | 13 |
| SinI | GGWCC | 1 cut(s) | 57 |
| SmlI | CTYRAG | 2 cut(s) | 65, 83 |
| SmoI | CTYRAG | 2 cut(s) | 65, 83 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 17 |
| Sse9I | AATT | 3 cut(s) | 153, 247, 416 |
| SsiI | CCGC | 1 cut(s) | 368 |
| SspMI | CTAG | 1 cut(s) | 321 |
| TaiI | ACGT | 1 cut(s) | 54 |
| TaqI | TCGA | 2 cut(s) | 119, 412 |
| TasI | AATT | 3 cut(s) | 153, 247, 416 |
| Tru1I | TTAA | 1 cut(s) | 141 |
| Tru9I | TTAA | 1 cut(s) | 141 |
| TspDTI | ATGAA | 2 cut(s) | 288, 467 |
| TspGWI | ACGGA | 1 cut(s) | 433 |
| VpaK11BI | GGWCC | 1 cut(s) | 57 |
| XspI | CTAG | 1 cut(s) | 321 |