Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005555

Physical Location & Seq

Genomic Coordinates Reverse (-)

49392189 .. 49401807

Gene Structure 9619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG273500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCAATTCTTCAGATCCCGGCGGAATGCTCCGGCCGACGAAGATTGCGGTGGACTCGATCTATGGGATGGTAAAGGAGTAATGGATAATGGCAAGTATGTGAGGTACAAACCTGAGCAGGTTGTTGAAGCCCTTGAGAGGCTTTATCATGAATGCCCCAAACCCAGTTCGATTCGTTGCCAACAGCTCTTTAAGGAGTACCCAATTCTCTCTAACATTGAGCCTAGCCAAATCAAAATTTTGGTTCCAGAACAGAAGGGCGATATTGAAGATGGTGAAGAACCCAAATCAGCAGCTATTAGGGAACTACGTACAAGAAGAGACTGGGGGTCTGGGTTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

114

Amino Acids

13.17

Weight (kDa)

5.5

Isoelectric Point (pI)

69.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005555)

Species	Orthologous Gene IDs
pyrus_communis	pycom110g00030
rosa_chinensis	RchiOBHm_Chr1g0322901 RchiOBHm_Chr2g0111751 RchiOBHm_Chr2g0164871 RchiOBHm_Chr5g0028331 RchiOBHm_Chr6g0258951
rosa_multiflora	Rmu_sc0006010.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030400
rosa_rugosa	Rorug06G0249500 Rorug06G0249500 Rorug06G0249600
rosa_samantha	Rh1BG244300 Rh2CG232400 Rh2CG295900 Rh2DG332800 Rh3AG253200 Rh3AG309200 Rh3AG310800 Rh3BG355500 Rh3CG342500 Rh4AG132400 Rh5AG356000 Rh5BG260900 Rh5BG263300 Rh5BG491200 Rh5CG515000 Rh5DG386200 Rh6BG167200 Rh6BG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AciI	CCGC	2 cut(s)	22, 48
AclWI	GGATC	1 cut(s)	9
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	237
AfaI	GTAC	3 cut(s)	107, 200, 313
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	128, 269
AhdI	GACNNNNNGTC	1 cut(s)	328
AluBI	AGCT	2 cut(s)	187, 296
AluI	AGCT	2 cut(s)	187, 296
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	237
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	2 cut(s)	62, 266
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	19
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	19
BmrI	ACTGGG	2 cut(s)	159, 334
BmuI	ACTGGG	2 cut(s)	159, 334
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	19
BsaAI	YACGTR	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	2 cut(s)	165, 329
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	2 cut(s)	165, 329
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	19, 32
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	315
BsmI	GAATGC	2 cut(s)	31, 158
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	14, 58
BspACI	CCGC	2 cut(s)	22, 48
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	9
BsrI	ACTGG	2 cut(s)	165, 329
BssMI	GATC	2 cut(s)	14, 58
Bst6I	CTCTTC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	17, 61
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	2 cut(s)	14, 58
BstMCI	CGRYCG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	17
BstSNI	TACGTA	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BstZI	CGGCCG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	106, 199, 312
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	7 cut(s)	35, 131, 142, 187, 223, 228, 296
CviKI_1	RGCY	7 cut(s)	35, 131, 142, 187, 223, 228, 296
CviQI	GTAC	3 cut(s)	106, 199, 312
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	16, 60
DpnII	GATC	2 cut(s)	14, 58
DriI	GACNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	33
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	313
Eam1105I	GACNNNNNGTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	37
EclXI	CGGCCG	1 cut(s)	33
Eco105I	TACGTA	1 cut(s)	311
Eco52I	CGGCCG	1 cut(s)	33
FaeI	CATG	1 cut(s)	152
FaiI	YATR	5 cut(s)	64, 99, 150, 341, 343
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	2 cut(s)	19, 32
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	2 cut(s)	54, 172
HpaII	CCGG	2 cut(s)	19, 32
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	2 cut(s)	149, 248
Hpy8I	GTNNAC	1 cut(s)	53
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	152
Kzo9I	GATC	2 cut(s)	14, 58
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	8 cut(s)	32, 45, 104, 126, 178, 261, 310, 318
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	310
MalI	GATC	2 cut(s)	16, 60
MboI	GATC	2 cut(s)	14, 58
MboII	GAAGA	4 cut(s)	53, 281, 290, 330
MflI	RGATCY	1 cut(s)	14
MluCI	AATT	3 cut(s)	5, 204, 237
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	2 cut(s)	96, 132
MseI	TTAA	1 cut(s)	192
MspI	CCGG	2 cut(s)	19, 32
MspR9I	CCNGG	1 cut(s)	19
Mva1269I	GAATGC	2 cut(s)	31, 158
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	2 cut(s)	14, 58
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	1 cut(s)	246
PagI	TCATGA	1 cut(s)	148
PctI	GAATGC	2 cut(s)	31, 158
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Ppu21I	YACGTR	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	3 cut(s)	107, 200, 313
RsaNI	GTAC	3 cut(s)	106, 199, 312
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	14, 58
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	6 cut(s)	107, 115, 123, 189, 298, 313
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SnaBI	TACGTA	1 cut(s)	311
Sse9I	AATT	3 cut(s)	5, 204, 237
SsiI	CCGC	2 cut(s)	22, 48
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	17
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	57, 170
TasI	AATT	3 cut(s)	5, 204, 237
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	165
XapI	RAATTY	1 cut(s)	237
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.