Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005555

Physical Location & Seq

Genomic Coordinates Forward (+)

37108708 .. 37115231

Gene Structure 6524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG244300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTGGCGGGGTTTTCACCCAATTCTCCCAAGTTTTCCCTCACCTTTTCAACTGTCAGGGAAGAAATCACTTTGTTTATATGCAAAGCTGCCCAGCCTAGTCCATTGTGTAGCACCTCACCCGCAGTGGACGTCACAGTAACCCCTAGAATTGCGTTCCCAGAGTATTCGTTCGGCAGTGGTGGCTTCAATCTCTCCCTCATCCCTGCCGAGAAGTTGCTTCCCAAAGAACCGAAAAATGCACTGGCCTTAGCGCCAGTCTCTGACCCACTTGACTGTACCGAGTCTTCTCCTAATGATAATGCTGGTGTTGAACCTATAGTGCAGGTTCCCATTGAAGATGACAAAGACACAGGGCAGTCTAATGAGAAGTCGAAAGCTGACACAAATGTTCCTGCCAAAGTGGAGCCAAGAATTGAGAAGAGGGTATGCCCTCCCACCTCTGAGGCCTCTCCCAAAAAGCTAAATATTTTGCTCCCGGACTTGTTCAAATATGTGGATGTGCATGATGCTCCAACAAAGAAGTTGAAAACCCCATGTTTCCCGACTAAATTTTCAGCAAGGCTTCTCACTCCCCCAGAAACTTCACTTTTCCCTTCATCAGATGGAAGTGAATCTCAACCAACCTTAGCTGCTGCAAAAAGCAGTGCTTTAAATAGATCAACTTCCTCAGCCAAGCCTTCAAGGTGCTGTTGCGTGGTGCGGGAAGTTGAATGCCATAGCTTGTGCCTCAGAAACTTGTGCAAGAATTCCAAGGTTCTTTGCATTATAATCTTGCTGTGTTCGATCTGTGGCATTTGTCTTCCTCTTACCATAAGCTCTATCTACTGTGTTTTGATTCCAGGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

30.36

Weight (kDa)

7.83

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005555)

Species	Orthologous Gene IDs
pyrus_communis	pycom110g00030
rosa_chinensis	RchiOBHm_Chr1g0322901 RchiOBHm_Chr2g0111751 RchiOBHm_Chr2g0164871 RchiOBHm_Chr5g0028331 RchiOBHm_Chr6g0258951
rosa_multiflora	Rmu_sc0006010.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030400
rosa_rugosa	Rorug06G0249500 Rorug06G0249500 Rorug06G0249600
rosa_samantha	Rh1BG244300 Rh2CG232400 Rh2CG295900 Rh2DG332800 Rh3AG253200 Rh3AG309200 Rh3AG310800 Rh3BG355500 Rh3CG342500 Rh4AG132400 Rh5AG356000 Rh5BG260900 Rh5BG263300 Rh5BG491200 Rh5CG515000 Rh5DG386200 Rh6BG167200 Rh6BG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AatII	GACGTC	1 cut(s)	135
Acc36I	ACCTGC	1 cut(s)	316
AciI	CCGC	3 cut(s)	8, 123, 703
AcsI	RAATTY	2 cut(s)	551, 748
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	280
AgsI	TTSAA	8 cut(s)	51, 190, 314, 338, 490, 529, 684, 713
AjnI	CCWGG	1 cut(s)	841
AluBI	AGCT	6 cut(s)	89, 380, 463, 632, 723, 819
AluI	AGCT	6 cut(s)	89, 380, 463, 632, 723, 819
Alw26I	GTCTC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	246, 447
ApeKI	GCWGC	3 cut(s)	89, 632, 635
ApoI	RAATTY	2 cut(s)	551, 748
AspLEI	GCGC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	3 cut(s)	9, 34, 111
BarI	GAAGNNNNNNTAC	2 cut(s)	271, 303
BbsI	GAAGAC	2 cut(s)	279, 794
BbvCI	CCTCAGC	1 cut(s)	670
BbvI	GCAGC	3 cut(s)	76, 619, 622
BccI	CCATC	1 cut(s)	599
BciT130I	CCWGG	1 cut(s)	843
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	99, 147
BfmI	CTRYAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	257
BfuAI	ACCTGC	1 cut(s)	316
BisI	GCNGC	3 cut(s)	90, 633, 636
BlsI	GCNGC	3 cut(s)	91, 634, 637
Bme1390I	CCNGG	2 cut(s)	479, 843
BmiI	GGNNCC	2 cut(s)	330, 408
BmrFI	CCNGG	2 cut(s)	479, 843
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	2 cut(s)	279, 794
Bpu10I	CCTNAGC	3 cut(s)	250, 628, 670
BpuMI	CCSGG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	753, 842
Bse1I	ACTGG	2 cut(s)	249, 257
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	2 cut(s)	753, 842
BseGI	GGATG	2 cut(s)	201, 505
BseMII	CTCAG	3 cut(s)	435, 684, 745
BseNI	ACTGG	2 cut(s)	249, 257
BseXI	GCAGC	3 cut(s)	76, 619, 622
BseYI	CCCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	248, 449
BsiSI	CCGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	2 cut(s)	248, 449
Bsp143I	GATC	2 cut(s)	659, 786
BspACI	CCGC	3 cut(s)	8, 123, 703
BspANI	GGCC	2 cut(s)	248, 449
BspCNI	CTCAG	3 cut(s)	436, 683, 744
BspLI	GGNNCC	2 cut(s)	330, 408
BspMI	ACCTGC	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	249, 257
BssECI	CCNNGG	2 cut(s)	753, 842
BssMI	GATC	2 cut(s)	659, 786
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	4 cut(s)	55, 139, 278, 830
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	1 cut(s)	132
BstDEI	CTNAG	5 cut(s)	250, 444, 628, 670, 731
BstF5I	GGATG	2 cut(s)	201, 505
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	662, 789
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	2 cut(s)	659, 786
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	843
BstSCI	CCNGG	2 cut(s)	477, 841
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	3 cut(s)	76, 619, 622
BstV2I	GAAGAC	2 cut(s)	279, 794
BsuRI	GGCC	2 cut(s)	248, 449
BtsCI	GGATG	2 cut(s)	201, 505
BtsI	GCAGTG	3 cut(s)	132, 184, 652
BtsIMutI	CAGTG	4 cut(s)	132, 184, 242, 652
BveI	ACCTGC	1 cut(s)	316
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	506, 537
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	5 cut(s)	250, 444, 628, 670, 731
DpnI	GATC	2 cut(s)	661, 788
DpnII	GATC	2 cut(s)	659, 786
DraI	TTTAAA	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	753
Eco147I	AGGCCT	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	2 cut(s)	509, 540
FalI	AAGNNNNNCTT	2 cut(s)	634, 666
FatI	CATG	2 cut(s)	505, 536
FauI	CCCGC	2 cut(s)	130, 696
Fnu4HI	GCNGC	3 cut(s)	90, 633, 636
FokI	GGATG	2 cut(s)	188, 512
Fsp4HI	GCNGC	3 cut(s)	90, 633, 636
FspBI	CTAG	2 cut(s)	99, 147
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	3 cut(s)	90, 633, 636
GsaI	CCCAGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	2 cut(s)	248, 449
HapII	CCGG	1 cut(s)	479
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	509, 540
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	3 cut(s)	284, 614, 838
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	3 cut(s)	9, 34, 111
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	5 cut(s)	265, 445, 604, 734, 851
Hpy188III	TCNNGA	1 cut(s)	544
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	606, 690
HpyCH4III	ACNGT	4 cut(s)	55, 139, 278, 830
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	7 cut(s)	84, 242, 325, 505, 638, 744, 765
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	5 cut(s)	250, 444, 628, 670, 731
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	509, 540
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	659, 786
LmnI	GCTCC	3 cut(s)	406, 480, 517
Lsp1109I	GCAGC	3 cut(s)	76, 619, 622
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	2 cut(s)	99, 147
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	133, 139
MalI	GATC	2 cut(s)	661, 788
MboI	GATC	2 cut(s)	659, 786
MboII	GAAGA	5 cut(s)	74, 279, 350, 433, 794
MluCI	AATT	5 cut(s)	22, 150, 414, 551, 748
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	539
MseI	TTAA	1 cut(s)	653
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	479, 843
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	1 cut(s)	843
MwoI	GCNNNNNNNGC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	2 cut(s)	659, 786
NlaIII	CATG	2 cut(s)	509, 540
NlaIV	GGNNCC	2 cut(s)	330, 408
NmeAIII	GCCGAG	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	449
PctI	GAATGC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	614, 838
PfoI	TCCNGGA	1 cut(s)	477
PkrI	GCNGC	3 cut(s)	91, 634, 637
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PsiI	TTATAA	1 cut(s)	770
Psp6I	CCWGG	1 cut(s)	841
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	2 cut(s)	330, 408
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	3 cut(s)	90, 633, 636
Sau3AI	GATC	2 cut(s)	659, 786
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	479, 843
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	318
Sse9I	AATT	5 cut(s)	22, 150, 414, 551, 748
SseBI	AGGCCT	1 cut(s)	449
SsiI	CCGC	3 cut(s)	8, 123, 703
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	2 cut(s)	99, 147
StuI	AGGCCT	1 cut(s)	449
StyD4I	CCNGG	2 cut(s)	477, 841
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	4 cut(s)	55, 139, 278, 830
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	374, 785
TasI	AATT	5 cut(s)	22, 150, 414, 551, 748
TfiI	GAWTC	2 cut(s)	614, 838
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	4 cut(s)	132, 184, 249, 652
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	89, 632, 635
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	588
TspRI	CASTG	4 cut(s)	132, 184, 249, 652
XapI	RAATTY	2 cut(s)	551, 748
XspI	CTAG	2 cut(s)	99, 147
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.