Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009406

Physical Location & Seq

Genomic Coordinates Reverse (-)

1012291 .. 1015126

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTGCAACAAGAAGAGTCTTCCAGGTCACGATGATCATGTGCAGAGGAGCTCCATGATTGATGATATGATCAAGGAGGAGGAAGAAGAAGAAGATGAATTGATCAAACATTTAGCGGCTCGGAAATCCAGAACAAAAACCAGAAAACCCAAGTTTTTAAGTCTCCGATCCCAGCTCATGTCCGAAGATGACGGCCAAAGTTACAGAGTACCCAACAAAATCACATCAAGGACGGCCAAGGCCCGCCACCGCCGCAGCCGCCGCCCTCAGCTCAACCTCTTCCCACTGCACCCGGAAACTCGGGTCAATAATGATTTTGAAGATAAAGGGTACATGCAGCAGGACGAGAACGTGGCCTTGTTGTTCGAGTCCGACGGCGGCGCCACCCTCAACGGCCTCCTAACCTCCACAACCACCACCGCCACCGCCACGACGTCGACAATGTCATCTGATCTGGAGGAAGCAGAGTCCTTTTCCTACTACAAGGGACGGGAGGAGTACAGGGAAGAAACAGAGTGTGACATTGTACGGACGGCGATGAGGAGCAGAGAGCGGGAGACGAGCGTGGAGAAGTGGGTGTGTTTCTCGGAGTTGGTGGAGGGGAAGAGGGAGGAGGACTGCTTGACTAGTCCGACGACCAGTACTACTGGTACACGCGGCGGCGATGACGGTTGGAATGTCGGTCATCAACGGCGGAGCAGCGGCGGAAAGGGGTTGTCGTTGGCGTTGAAGCTGGATTATGAGGAGATATTGAATGCATGGTCCGATAAGGGACCACTCTACATTGATGGAGGAGATTCCCCACAAACCGTACCTGACTTACTGCACCAGCAGGATCATCAGCTTTTTGACCTCCATGAGAACAGCAGTACTCCGAATGGTTCTGGTGGGAACTTATGGAGGGTTCCGGAAGAGGATGGCAGCTTGAAAATGAAGATGGAGCAAAGAGAGACCAGTATGTTGAGGTATAAGGAAAAGAGGCGTAATCGGCTCTACTCGAAGCGGATCCGGTACCAAGTCCGAAAACTCAATGCCGAAAAACGACCCCGAATGAAGGGTCGTTTCGTGAAGAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

360

Amino Acids

41.35

Weight (kDa)

8.2

Isoelectric Point (pI)

67.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	316 - 358	5.5e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14370
fragaria_vesca	FvH4_6g52200 FvH4_6g52200 FvH4_6g52200
malus_domestica	MD09G1019800.v1.1 MD17G1020400.v1.1
prunus_persica	Prupe.3G296700_v2.0.a1
pyrus_communis	pycom111g01640 pycom17g01700
rosa_chinensis	RchiOBHm_Chr2g0173701
rosa_laevigata	RLG00000022215
rosa_multiflora	Rmu_co8469107.1_g000001 Rmu_sc0002538.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078670 Rroxscaffold_2G00078690
rosa_rugosa	Rorug02G0572400
rosa_samantha	Rh2AG651300 Rh2BG661800 Rh2CG626700 Rh2CG626800 Rh2DG677000
rosa_wichuraiana	Rw2G053450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	1011
AccB1I	GGYRCC	2 cut(s)	380, 1011
AccBSI	CCGCTC	1 cut(s)	553
AccI	GTMKAC	1 cut(s)	437
AccII	CGCG	1 cut(s)	657
AccIII	TCCGGA	1 cut(s)	907
AclWI	GGATC	4 cut(s)	162, 843, 1000, 1013
AcoI	YGGCCR	2 cut(s)	193, 234
AcyI	GRCGYC	2 cut(s)	381, 434
AfaI	GTAC	9 cut(s)	210, 332, 500, 528, 643, 652, 813, 871, 1013
AfiI	CCNNNNNNNGG	1 cut(s)	1054
AgsI	TTSAA	4 cut(s)	320, 730, 754, 928
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	6 cut(s)	51, 175, 271, 733, 844, 924
AluI	AGCT	6 cut(s)	51, 175, 271, 733, 844, 924
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	3 cut(s)	167, 551, 944
AlwI	GGATC	4 cut(s)	162, 843, 1000, 1013
Ama87I	CYCGRG	1 cut(s)	300
Aor13HI	TCCGGA	1 cut(s)	907
AoxI	GGCC	5 cut(s)	193, 234, 240, 354, 394
ApeKI	GCWGC	4 cut(s)	255, 337, 699, 921
ArsI	GACNNNNNNTTYG	2 cut(s)	1042, 1074
Asp718I	GGTACC	1 cut(s)	1011
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	3 cut(s)	241, 762, 773
AsuC2I	CCSGG	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	2 cut(s)	762, 773
BamHI	GGATCC	1 cut(s)	1005
BanI	GGYRCC	2 cut(s)	380, 1011
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	267, 349, 711, 933
BccI	CCATC	3 cut(s)	782, 911, 931
BceAI	ACGGC	6 cut(s)	208, 249, 391, 409, 549, 707
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	3 cut(s)	34, 69, 102
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	3 cut(s)	167, 551, 944
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	1 cut(s)	627
BfoI	RGCGCY	1 cut(s)	384
BmcAI	AGTACT	2 cut(s)	643, 871
Bme1390I	CCNGG	2 cut(s)	24, 293
Bme18I	GGWCC	2 cut(s)	762, 773
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	3 cut(s)	241, 762, 773
BmiI	GGNNCC	5 cut(s)	382, 774, 906, 1007, 1013
BmrFI	CCNGG	2 cut(s)	24, 293
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	293
BsaHI	GRCGYC	2 cut(s)	381, 434
BsaI	GGTCTC	1 cut(s)	944
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	2 cut(s)	907, 1008
Bsc4I	CCNNNNNNNGG	1 cut(s)	1054
Bse1I	ACTGG	3 cut(s)	639, 652, 954
BseAI	TCCGGA	1 cut(s)	907
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	922
BseLI	CCNNNNNNNGG	1 cut(s)	1054
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	3 cut(s)	639, 652, 954
BseRI	GAGGAG	7 cut(s)	61, 92, 509, 556, 626, 758, 807
BseXI	GCAGC	4 cut(s)	267, 349, 711, 933
BseYI	CCCAGC	1 cut(s)	171
BsgI	GTGCAG	3 cut(s)	62, 272, 809
Bsh1236I	CGCG	1 cut(s)	657
BshFI	GGCC	5 cut(s)	195, 236, 242, 356, 396
BshNI	GGYRCC	2 cut(s)	380, 1011
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	293, 908, 1009
BslFI	GGGAC	2 cut(s)	501, 786
BslI	CCNNNNNNNGG	1 cut(s)	1054
BsmAI	GTCTC	3 cut(s)	167, 551, 944
BsmBI	CGTCTC	1 cut(s)	551
BsmFI	GGGAC	2 cut(s)	501, 786
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	5 cut(s)	195, 236, 242, 356, 396
Bso31I	GGTCTC	1 cut(s)	944
BsoBI	CYCGRG	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	907
Bsp143I	GATC	7 cut(s)	34, 69, 102, 167, 451, 835, 1005
BspANI	GGCC	5 cut(s)	195, 236, 242, 356, 396
BspCNI	CTCAG	1 cut(s)	280
BspEI	TCCGGA	1 cut(s)	907
BspFNI	CGCG	1 cut(s)	657
BspLI	GGNNCC	5 cut(s)	382, 774, 906, 1007, 1013
BspPI	GGATC	4 cut(s)	162, 843, 1000, 1013
BspT107I	GGYRCC	2 cut(s)	380, 1011
BspTNI	GGTCTC	1 cut(s)	944
BsrBI	CCGCTC	1 cut(s)	553
BsrI	ACTGG	3 cut(s)	639, 652, 954
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	7 cut(s)	34, 69, 102, 167, 451, 835, 1005
BssNI	GRCGYC	2 cut(s)	381, 434
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	671, 811
Bst6I	CTCTTC	5 cut(s)	8, 284, 599, 906, 1064
BstACI	GRCGYC	2 cut(s)	381, 434
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	922
BstFNI	CGCG	1 cut(s)	657
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	7 cut(s)	37, 72, 105, 170, 454, 838, 1008
BstMAI	GTCTC	3 cut(s)	167, 551, 944
BstMBI	GATC	7 cut(s)	34, 69, 102, 167, 451, 835, 1005
BstMWI	GCNNNNNNNGC	4 cut(s)	252, 258, 261, 988
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	22, 291
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	4 cut(s)	267, 349, 711, 933
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	1005
BstYI	RGATCY	1 cut(s)	1005
BsuRI	GGCC	5 cut(s)	195, 236, 242, 356, 396
BtgZI	GCGATG	2 cut(s)	551, 678
BtsCI	GGATG	1 cut(s)	922
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	3 cut(s)	241, 762, 773
Csp6I	GTAC	9 cut(s)	209, 331, 499, 527, 642, 651, 812, 870, 1012
CviAII	CATG	6 cut(s)	38, 55, 178, 334, 759, 857
CviQI	GTAC	9 cut(s)	209, 331, 499, 527, 642, 651, 812, 870, 1012
DdeI	CTNAG	1 cut(s)	267
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	7 cut(s)	36, 71, 104, 169, 453, 837, 1007
DpnII	GATC	7 cut(s)	34, 69, 102, 167, 451, 835, 1005
EaeI	YGGCCR	2 cut(s)	193, 234
Eam1104I	CTCTTC	5 cut(s)	8, 284, 599, 906, 1064
EarI	CTCTTC	5 cut(s)	8, 284, 599, 906, 1064
EciI	GGCGGA	2 cut(s)	709, 720
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	944
Eco47I	GGWCC	2 cut(s)	762, 773
Eco53kI	GAGCTC	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	53
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	6 cut(s)	41, 58, 181, 337, 762, 860
FaqI	GGGAC	2 cut(s)	501, 786
FatI	CATG	6 cut(s)	37, 54, 177, 333, 758, 856
FauI	CCCGC	2 cut(s)	251, 546
FbaI	TGATCA	3 cut(s)	34, 69, 102
FblI	GTMKAC	1 cut(s)	437
FokI	GGATG	1 cut(s)	929
FriOI	GRGCYC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	1 cut(s)	382
GsaI	CCCAGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	5 cut(s)	195, 236, 242, 356, 396
HapII	CCGG	3 cut(s)	293, 908, 1009
HhaI	GCGC	1 cut(s)	383
Hin1I	GRCGYC	2 cut(s)	381, 434
Hin1II	CATG	6 cut(s)	41, 58, 181, 337, 762, 860
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	4 cut(s)	16, 368, 467, 797
HpaII	CCGG	3 cut(s)	293, 908, 1009
Hpy166II	GTNNAC	2 cut(s)	438, 653
Hpy188III	TCNNGA	5 cut(s)	29, 129, 455, 908, 1066
Hpy8I	GTNNAC	2 cut(s)	438, 653
Hpy99I	CGWCG	4 cut(s)	377, 436, 439, 637
HpyAV	CCTTC	1 cut(s)	1048
HpyCH4III	ACNGT	2 cut(s)	671, 811
HpyCH4IV	ACGT	2 cut(s)	351, 434
HpyCH4V	TGCA	6 cut(s)	6, 43, 289, 337, 758, 826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	252, 258, 261, 988
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	2 cut(s)	351, 434
Hsp92I	GRCGYC	2 cut(s)	381, 434
Hsp92II	CATG	6 cut(s)	41, 58, 181, 337, 762, 860
HspAI	GCGC	1 cut(s)	381
KasI	GGCGCC	1 cut(s)	380
Kpn2I	TCCGGA	1 cut(s)	907
KpnI	GGTACC	1 cut(s)	1015
Ksp22I	TGATCA	3 cut(s)	34, 69, 102
Kzo9I	GATC	7 cut(s)	34, 69, 102, 167, 451, 835, 1005
LmnI	GCTCC	5 cut(s)	48, 56, 543, 696, 940
Lsp1109I	GCAGC	4 cut(s)	267, 349, 711, 933
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	2 cut(s)	351, 434
MaeIII	GTNAC	3 cut(s)	26, 200, 518
MalI	GATC	7 cut(s)	36, 71, 104, 169, 453, 837, 1007
MbiI	CCGCTC	1 cut(s)	553
MboI	GATC	7 cut(s)	34, 69, 102, 167, 451, 835, 1005
MflI	RGATCY	1 cut(s)	1005
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	98
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	3 cut(s)	25, 377, 476
MmeI	TCCRAC	3 cut(s)	396, 653, 656
Mph1103I	ATGCAT	1 cut(s)	760
MroI	TCCGGA	1 cut(s)	907
MseI	TTAA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	702
MspI	CCGG	3 cut(s)	293, 908, 1009
MspR9I	CCNGG	2 cut(s)	24, 293
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	657
MwoI	GCNNNNNNNGC	4 cut(s)	252, 258, 261, 988
NarI	GGCGCC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	7 cut(s)	34, 69, 102, 167, 451, 835, 1005
NlaIII	CATG	6 cut(s)	41, 58, 181, 337, 762, 860
NlaIV	GGNNCC	5 cut(s)	382, 774, 906, 1007, 1013
NmuCI	GTSAC	2 cut(s)	26, 518
NsiI	ATGCAT	1 cut(s)	760
NspI	RCATGY	1 cut(s)	337
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	1 cut(s)	797
PflFI	GACNNNGTC	1 cut(s)	442
PleI	GAGTC	3 cut(s)	24, 376, 475
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	3 cut(s)	24, 376, 475
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	5 cut(s)	382, 774, 906, 1007, 1013
PspPI	GGNCC	3 cut(s)	241, 762, 773
PsuI	RGATCY	1 cut(s)	1005
PsyI	GACNNNGTC	1 cut(s)	442
RsaI	GTAC	9 cut(s)	210, 332, 500, 528, 643, 652, 813, 871, 1013
RsaNI	GTAC	9 cut(s)	209, 331, 499, 527, 642, 651, 812, 870, 1012
SacI	GAGCTC	1 cut(s)	53
SalI	GTCGAC	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	158
Sau3AI	GATC	7 cut(s)	34, 69, 102, 167, 451, 835, 1005
Sau96I	GGNCC	3 cut(s)	241, 762, 773
ScaI	AGTACT	2 cut(s)	643, 871
SchI	GAGTC	3 cut(s)	25, 377, 476
ScrFI	CCNGG	2 cut(s)	24, 293
SduI	GDGCHC	1 cut(s)	53
SfoI	GGCGCC	1 cut(s)	382
SinI	GGWCC	2 cut(s)	762, 773
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	1 cut(s)	98
SspDI	GGCGCC	1 cut(s)	380
SspMI	CTAG	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	22, 291
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	671, 811
TaiI	ACGT	2 cut(s)	354, 437
TaqI	TCGA	3 cut(s)	366, 437, 998
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	1 cut(s)	98
TatI	WGTACW	3 cut(s)	498, 641, 869
TauI	GCSGC	8 cut(s)	119, 255, 261, 264, 381, 660, 663, 705
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	26, 518
TseI	GCWGC	4 cut(s)	255, 337, 699, 921
Tsp45I	GTSAC	2 cut(s)	26, 518
TspDTI	ATGAA	3 cut(s)	111, 947, 1067
TspGWI	ACGGA	1 cut(s)	544
TspRI	CASTG	1 cut(s)	291
Tth111I	GACNNNGTC	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	762, 773
XceI	RCATGY	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	1 cut(s)	627
ZraI	GACGTC	1 cut(s)	435
ZrmI	AGTACT	2 cut(s)	643, 871
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.