pycom11g05310

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007365
Physical Location & Seq
Reverse (-)
4102689 .. 4105126
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1398 bp
ATGGCTGGAATCTACGGTCAAGGGGGCGATGGTGCCCCTCCGACATACGGATCTAGCGGCGGCGGTGGCTATGGGGGTTCTGGCGGATATGGAGGCGGTTCTGGTGGTTATGGAGGTGGTGGTGGAGGCGGGAGCTATGGTGGAAGCGGTGGTGGTGGATACGGAGGTAAGGGCGGCGATGGAGGTGGTTACGGTGGTGGACGCGGCGGTGGCGGTGGTGGCCGAGGTGGAGGATATCAAGGCGACCGTGGTGGTGGAGGCAGAGGTGGCGACCGTGGTGGTGGCGGCAGAGGCGGCCGCGGTGGCAGTGGAAGAGATGGTGATTGGCTGTGTCCTAATCCAGGCTGTGGGAATTCAAACTTTGCAAGAAGAGTTGAGTGTAATAAGTGTGGCACGCCCTCTCCTTCGGGTGCCGGTGGTGATCGTGGCAGTGGTGGTGGTTATAACAGAGGAGGAAGTGGTGGGGGCTACGGTGGTGGTAACCGTGGTGGTAGGGGTGGTAATTATGATGGGGGTCGAAGTGGTAACTATGAAGGAGGTAAAAGTAGCAGTTATGATGGAGGCAGAGGCAGTAGTTATGACAGTAGAGGCGGTGGTGGTAGTAGAGGTGGTTCTTATGGTGGTAGTCAAGGAAGAGATGATGGTGGGTATGGTCAGGTTCCTCCAAGTGCTCCACCGTCCTATGGTGCAGCTGGAGGCAATTACGCACCATCTTACAATGCTAGTTATGGAACAGATGCAGTTCCGCCTCCTACAAGCTATACTGGTGGACCTGGATCATATCCCCCATCTTATGGTGGTCCTGCGGGTGGTTATGGTGGTGATGGTCTAGGTGATGCAAGGGGTGGTGGGCGTGGGGGCCCTCCAGCTAAATATGATGGTGGATACAGTGCTGGTGGTCGTGGTGGATATGGCAGTTCTGCTACGGAAGCCCCAGCTAAGGTGAAGCAGTGCGACCAGAATTGTGATGATACTTGTGACAATGCTAGAATCTACATATCAAACTTACCACCAGATGTTACCGTTGACGAACTTCAGCAGCTCTTTGGAGGCATTGGACAAGTGGGAAGAATCAAGCAGAAACGTGGCTATAAGGATCAATGGCCATATAATATCAAAATATACACAGATGAGTCTGGAAAAAACAAAGGCGACGCATGTTTAGCCTATGAAGATCCCTCTGCTGCACATTCAGCCGGTGGATTTTACAATGATTATGACTTAAGGGGCTATAAGATCAGTGTTGGAATGGCGGAGAGATCAGCTCCAAGGCCTTCGTTTGAACAAGGTGGTGGTGGCGGTAGAGGTGGATATGGTGGCGGTGACAGGCGCAACAGTTATAGAGACGGTGGAGCTGATAGACATCAGCACGGCGGAAACCGTTCGCGTCCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
RRM_1 zf-RanBP

Protein Analysis

466

Amino Acids

45.07

Weight (kDa)

8.95

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 105 - 136 3.5e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccB1I GGYRCC 2 cut(s) 32, 410
AccB7I CCANNNNNTGG 2 cut(s) 347, 794
AccII CGCG 3 cut(s) 204, 300, 1387
AclWI GGATC 4 cut(s) 58, 784, 1104, 1169
AcoI YGGCCR 3 cut(s) 220, 295, 1103
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 1019
AfiI CCNNNNNNNGG 7 cut(s) 47, 341, 347, 683, 794, 809, 940
AflII CTTAAG 1 cut(s) 1222
AgsI TTSAA 2 cut(s) 357, 1283
AjnI CCWGG 2 cut(s) 340, 772
AluBI AGCT 8 cut(s) 135, 692, 759, 869, 938, 1042, 1265, 1355
AluI AGCT 8 cut(s) 135, 692, 759, 869, 938, 1042, 1265, 1355
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 1 cut(s) 1338
AlwI GGATC 4 cut(s) 58, 784, 1104, 1169
AoxI GGCC 5 cut(s) 220, 295, 859, 1103, 1271
ApaI GGGCCC 1 cut(s) 863
ApeKI GCWGC 3 cut(s) 689, 1039, 1184
ApoI RAATTY 1 cut(s) 352
Asp700I GAANNNNTTC 1 cut(s) 1381
AspLEI GCGC 1 cut(s) 1332
AspS9I GGNCC 4 cut(s) 770, 800, 859, 860
AsuHPI GGTGA 6 cut(s) 332, 431, 833, 845, 955, 1334
AvaII GGWCC 2 cut(s) 770, 800
BaeGI GKGCMC 2 cut(s) 37, 863
BaeI ACNNNNGTAYC 2 cut(s) 151, 184
BalI TGGCCA 1 cut(s) 1105
BanI GGYRCC 2 cut(s) 32, 410
BanII GRGCYC 1 cut(s) 863
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 3 cut(s) 701, 1051, 1171
BceAI ACGGC 1 cut(s) 1387
BciT130I CCWGG 2 cut(s) 342, 774
BciVI GTATCC 2 cut(s) 152, 878
BcoDI GTCTC 1 cut(s) 1338
BfaI CTAG 4 cut(s) 54, 723, 830, 987
BfrI CTTAAG 1 cut(s) 1222
BfuI GTATCC 2 cut(s) 152, 878
BglI GCCNNNNNGGC 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 342, 774
Bme18I GGWCC 2 cut(s) 770, 800
BmgT120I GGNCC 4 cut(s) 770, 800, 859, 860
BmiI GGNNCC 5 cut(s) 34, 412, 660, 860, 861
BmrFI CCNGG 2 cut(s) 342, 774
BmsI GCATC 2 cut(s) 727, 826
BplI GAGNNNNNCTC 2 cut(s) 1249, 1281
BpmI CTGGAG 2 cut(s) 714, 849
Bpu10I CCTNAGC 1 cut(s) 939
BsaBI GATNNNNATC 1 cut(s) 1362
BsaJI CCNNGG 6 cut(s) 223, 247, 274, 298, 484, 1268
BsaXI ACNNNNNCTCC 4 cut(s) 124, 154, 385, 415
Bsc4I CCNNNNNNNGG 7 cut(s) 47, 341, 347, 683, 794, 809, 940
Bse118I RCCGGY 2 cut(s) 413, 1196
Bse1I ACTGG 1 cut(s) 769
Bse8I GATNNNNATC 1 cut(s) 1362
BseBI CCWGG 2 cut(s) 342, 774
BseDI CCNNGG 6 cut(s) 223, 247, 274, 298, 484, 1268
BseJI GATNNNNATC 1 cut(s) 1362
BseLI CCNNNNNNNGG 7 cut(s) 47, 341, 347, 683, 794, 809, 940
BseNI ACTGG 1 cut(s) 769
BseRI GAGGAG 1 cut(s) 465
BseSI GKGCMC 2 cut(s) 37, 863
BseX3I CGGCCG 1 cut(s) 295
BseXI GCAGC 3 cut(s) 701, 1051, 1171
BseYI CCCAGC 1 cut(s) 934
BsgI GTGCAG 2 cut(s) 708, 1170
Bsh1236I CGCG 3 cut(s) 204, 300, 1387
Bsh1285I CGRYCG 3 cut(s) 247, 274, 298
BshFI GGCC 5 cut(s) 222, 297, 861, 1105, 1273
BshNI GGYRCC 2 cut(s) 32, 410
BsiEI CGRYCG 3 cut(s) 247, 274, 298
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 2 cut(s) 414, 1197
BslI CCNNNNNNNGG 7 cut(s) 47, 341, 347, 683, 794, 809, 940
BsmAI GTCTC 1 cut(s) 1338
BsmBI CGTCTC 1 cut(s) 1338
BsnI GGCC 5 cut(s) 222, 297, 861, 1105, 1273
Bsp120I GGGCCC 1 cut(s) 859
Bsp1286I GDGCHC 3 cut(s) 37, 673, 863
Bsp143I GATC 7 cut(s) 50, 421, 776, 1096, 1174, 1236, 1259
BspANI GGCC 5 cut(s) 222, 297, 861, 1105, 1273
BspFNI CGCG 3 cut(s) 204, 300, 1387
BspLI GGNNCC 5 cut(s) 34, 412, 660, 860, 861
BspPI GGATC 4 cut(s) 58, 784, 1104, 1169
BspT107I GGYRCC 2 cut(s) 32, 410
BspTI CTTAAG 1 cut(s) 1222
BsrFI RCCGGY 2 cut(s) 413, 1196
BsrI ACTGG 1 cut(s) 769
BssAI RCCGGY 2 cut(s) 413, 1196
BssECI CCNNGG 6 cut(s) 223, 247, 274, 298, 484, 1268
BssMI GATC 7 cut(s) 50, 421, 776, 1096, 1174, 1236, 1259
BssT1I CCWWGG 1 cut(s) 1268
Bst2UI CCWGG 2 cut(s) 342, 774
Bst6I CTCTTC 3 cut(s) 307, 364, 628
BstAFI CTTAAG 1 cut(s) 1222
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 939
BstDSI CCRYGG 4 cut(s) 247, 274, 298, 484
BstEII GGTNACC 1 cut(s) 479
BstENI CCTNNNNNAGG 1 cut(s) 339
BstFNI CGCG 3 cut(s) 204, 300, 1387
BstHHI GCGC 1 cut(s) 1332
BstKTI GATC 7 cut(s) 53, 424, 779, 1099, 1177, 1239, 1262
BstMAI GTCTC 1 cut(s) 1338
BstMBI GATC 7 cut(s) 50, 421, 776, 1096, 1174, 1236, 1259
BstMCI CGRYCG 3 cut(s) 247, 274, 298
BstNI CCWGG 2 cut(s) 342, 774
BstNSI RCATGY 1 cut(s) 1161
BstPI GGTNACC 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 340, 772
BstSLI GKGCMC 2 cut(s) 37, 863
BstUI CGCG 3 cut(s) 204, 300, 1387
BstV1I GCAGC 3 cut(s) 701, 1051, 1171
BstX2I RGATCY 2 cut(s) 50, 1174
BstYI RGATCY 2 cut(s) 50, 1174
BstZI CGGCCG 1 cut(s) 295
BsuI GTATCC 2 cut(s) 152, 878
BsuRI GGCC 5 cut(s) 222, 297, 861, 1105, 1273
BtgI CCRYGG 4 cut(s) 247, 274, 298, 484
BtgZI GCGATG 2 cut(s) 42, 192
BtsI GCAGTG 3 cut(s) 313, 436, 956
BtsIMutI CAGTG 5 cut(s) 313, 436, 895, 956, 1246
Cac8I GCNNGC 1 cut(s) 395
CciNI GCGGCCGC 1 cut(s) 295
CfoI GCGC 1 cut(s) 1332
Cfr10I RCCGGY 2 cut(s) 413, 1196
Cfr13I GGNCC 4 cut(s) 770, 800, 859, 860
Cfr42I CCGCGG 1 cut(s) 301
CseI GACGC 3 cut(s) 210, 1163, 1376
CviAII CATG 1 cut(s) 1158
DdeI CTNAG 1 cut(s) 939
DpnI GATC 7 cut(s) 52, 423, 778, 1098, 1176, 1238, 1261
DpnII GATC 7 cut(s) 50, 421, 776, 1096, 1174, 1236, 1259
EaeI YGGCCR 3 cut(s) 220, 295, 1103
EagI CGGCCG 1 cut(s) 295
Eam1104I CTCTTC 3 cut(s) 307, 364, 628
EarI CTCTTC 3 cut(s) 307, 364, 628
EciI GGCGGA 4 cut(s) 99, 735, 1268, 1389
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 1268
Eco147I AGGCCT 1 cut(s) 1273
Eco24I GRGCYC 1 cut(s) 863
Eco32I GATATC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 770, 800
Eco52I CGGCCG 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 1019
Eco91I GGTNACC 1 cut(s) 479
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoO109I RGGNCCY 2 cut(s) 859, 860
EcoO65I GGTNACC 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 340, 772
EcoRV GATATC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 1268
EcoT38I GRGCYC 1 cut(s) 863
ErhI CCWWGG 1 cut(s) 1268
Esp3I CGTCTC 1 cut(s) 1338
FaeI CATG 1 cut(s) 1161
FatI CATG 1 cut(s) 1157
FauI CCCGC 2 cut(s) 122, 799
FriOI GRGCYC 1 cut(s) 863
FspBI CTAG 4 cut(s) 54, 723, 830, 987
GlaI GCGC 1 cut(s) 1331
GsaI CCCAGC 1 cut(s) 938
GsuI CTGGAG 2 cut(s) 714, 849
HaeIII GGCC 5 cut(s) 222, 297, 861, 1105, 1273
HapII CCGG 2 cut(s) 414, 1197
HgaI GACGC 3 cut(s) 210, 1163, 1376
HhaI GCGC 1 cut(s) 1332
Hin1II CATG 1 cut(s) 1161
Hin6I GCGC 1 cut(s) 1330
HinP1I GCGC 1 cut(s) 1330
HincII GTYRAC 1 cut(s) 1027
HindII GTYRAC 1 cut(s) 1027
HinfI GANTC 4 cut(s) 9, 990, 1071, 1133
HpaII CCGG 2 cut(s) 414, 1197
HphI GGTGA 6 cut(s) 332, 431, 833, 845, 955, 1334
Hpy166II GTNNAC 3 cut(s) 200, 770, 1027
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 1137
Hpy8I GTNNAC 3 cut(s) 200, 770, 1027
Hpy99I CGWCG 1 cut(s) 1157
HpyAV CCTTC 3 cut(s) 414, 527, 1284
HpyCH4IV ACGT 1 cut(s) 1084
HpyCH4V TGCA 5 cut(s) 365, 689, 740, 839, 1187
HpyF3I CTNAG 1 cut(s) 939
HpySE526I ACGT 1 cut(s) 1084
Hsp92II CATG 1 cut(s) 1161
HspAI GCGC 1 cut(s) 1330
KspI CCGCGG 1 cut(s) 301
Kzo9I GATC 7 cut(s) 50, 421, 776, 1096, 1174, 1236, 1259
LmnI GCTCC 4 cut(s) 132, 676, 1270, 1352
Lsp1109I GCAGC 3 cut(s) 701, 1051, 1171
LweI GCATC 2 cut(s) 727, 826
MaeI CTAG 4 cut(s) 54, 723, 830, 987
MaeII ACGT 1 cut(s) 1084
MaeIII GTNAC 6 cut(s) 188, 479, 524, 977, 1018, 1322
MalI GATC 7 cut(s) 52, 423, 778, 1098, 1176, 1238, 1261
MboI GATC 7 cut(s) 50, 421, 776, 1096, 1174, 1236, 1259
MboII GAAGA 5 cut(s) 324, 381, 645, 1080, 1184
MflI RGATCY 2 cut(s) 50, 1174
MhlI GDGCHC 3 cut(s) 37, 673, 863
MlsI TGGCCA 1 cut(s) 1105
MluCI AATT 4 cut(s) 352, 502, 700, 961
MluNI TGGCCA 1 cut(s) 1105
MlyI GAGTC 1 cut(s) 1142
MmeI TCCRAC 2 cut(s) 65, 1225
Mox20I TGGCCA 1 cut(s) 1105
MroXI GAANNNNTTC 1 cut(s) 1381
MscI TGGCCA 1 cut(s) 1105
MseI TTAA 1 cut(s) 1223
Msp20I TGGCCA 1 cut(s) 1105
MspA1I CMGCKG 2 cut(s) 300, 692
MspCI CTTAAG 1 cut(s) 1222
MspI CCGG 2 cut(s) 414, 1197
MspR9I CCNGG 2 cut(s) 342, 774
MvaI CCWGG 2 cut(s) 342, 774
MvnI CGCG 3 cut(s) 204, 300, 1387
NdeII GATC 7 cut(s) 50, 421, 776, 1096, 1174, 1236, 1259
NlaIII CATG 1 cut(s) 1161
NlaIV GGNNCC 5 cut(s) 34, 412, 660, 860, 861
NmeAIII GCCGAG 1 cut(s) 248
NmuCI GTSAC 2 cut(s) 977, 1322
NotI GCGGCCGC 1 cut(s) 295
NspI RCATGY 1 cut(s) 1161
PceI AGGCCT 1 cut(s) 1273
PdmI GAANNNNTTC 1 cut(s) 1381
PfeI GAWTC 3 cut(s) 9, 990, 1071
PflMI CCANNNNNTGG 2 cut(s) 347, 794
PleI GAGTC 1 cut(s) 1141
PpsI GAGTC 1 cut(s) 1141
PsiI TTATAA 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 340, 772
PspEI GGTNACC 1 cut(s) 479
PspFI CCCAGC 1 cut(s) 934
PspGI CCWGG 2 cut(s) 340, 772
PspN4I GGNNCC 5 cut(s) 34, 412, 660, 860, 861
PspOMI GGGCCC 1 cut(s) 859
PspPI GGNCC 4 cut(s) 770, 800, 859, 860
PsrI GAACNNNNNNTAC 2 cut(s) 595, 627
PsuI RGATCY 2 cut(s) 50, 1174
PvuII CAGCTG 1 cut(s) 692
SacII CCGCGG 1 cut(s) 301
SaqAI TTAA 1 cut(s) 1223
Sau3AI GATC 7 cut(s) 50, 421, 776, 1096, 1174, 1236, 1259
Sau96I GGNCC 4 cut(s) 770, 800, 859, 860
SchI GAGTC 1 cut(s) 1142
ScrFI CCNGG 2 cut(s) 342, 774
SduI GDGCHC 3 cut(s) 37, 673, 863
SfaNI GCATC 2 cut(s) 727, 826
Sfr303I CCGCGG 1 cut(s) 301
SgrBI CCGCGG 1 cut(s) 301
SinI GGWCC 2 cut(s) 770, 800
SmlI CTYRAG 1 cut(s) 1222
SmoI CTYRAG 1 cut(s) 1222
Sse9I AATT 4 cut(s) 352, 502, 700, 961
SseBI AGGCCT 1 cut(s) 1273
SspMI CTAG 4 cut(s) 54, 723, 830, 987
StuI AGGCCT 1 cut(s) 1273
StyD4I CCNGG 2 cut(s) 340, 772
StyI CCWWGG 1 cut(s) 1268
TaiI ACGT 1 cut(s) 1087
TaqI TCGA 1 cut(s) 517
TasI AATT 4 cut(s) 352, 502, 700, 961
TauI GCSGC 7 cut(s) 60, 63, 177, 207, 288, 297, 300
TfiI GAWTC 3 cut(s) 9, 990, 1071
Tru1I TTAA 1 cut(s) 1223
Tru9I TTAA 1 cut(s) 1223
TscAI CASTG 5 cut(s) 313, 436, 895, 956, 1246
TseFI GTSAC 2 cut(s) 977, 1322
TseI GCWGC 3 cut(s) 689, 1039, 1184
Tsp45I GTSAC 2 cut(s) 977, 1322
TspDTI ATGAA 2 cut(s) 546, 1185
TspGWI ACGGA 3 cut(s) 63, 177, 941
TspRI CASTG 5 cut(s) 313, 436, 895, 956, 1246
Van91I CCANNNNNTGG 2 cut(s) 347, 794
Vha464I CTTAAG 1 cut(s) 1222
VpaK11BI GGWCC 2 cut(s) 770, 800
XagI CCTNNNNNAGG 1 cut(s) 339
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 1161
XmnI GAANNNNTTC 1 cut(s) 1381
XspI CTAG 4 cut(s) 54, 723, 830, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.