Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003227

Physical Location & Seq

Genomic Coordinates Forward (+)

9164667 .. 9168913

Gene Structure 4247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGAAGAGGATCGATCTTGAGAGGGAGCAGGAGGTTGCACCATCAAGCCCCAGTGCCTCAGGCAGGGACACTATCCCAAAGGCTGAGGGTCTGATTGTATTCTTTCCTGGACTACCTGGTTCTGCTAAGTCAGCACTATGCACGGAACTACTTCAAGACCCGGGAGGAATGGGAGACGATCGACCAATTCAAAGCCTGATGGGTGATCTTATCAAAGGAAAATATTGGCAGAAGGTTGCTGAAGAGCGCAAGAAAAAACCATATTCCATAATTCTTGCAGACAAGAATGCCCCAAATGAAGAAGTATGGAGACAGATTGAACACATGTGCAACAGCACTAGGGCCTCCGCGGTTCCAGTTGTGCCTGATTCTGAAGGAACCGATTCAAATCCATTTTCTCTTGATGCATTAGCAATTTTCATGTCTCGGGTGCTTCAACGTGCTAATCATCCAGGAAACCTTGACAAGGAATCTCCAAATGCTGGCTATGTGCTGCTAATGTTCTATCACCTTTACGAGGGCAAGAGTCGCCAAGAGTTTGATGGGGAATTAGTTGAGCGTTTTGGCTCACTTGTCAAGATGCCATTGCTGAAGTCTGATAGGAATCCATTACCTGATCCCGTGAAGAATATTCTGGAGGAGGGAATAAATCTATACAAGCTTCACACCGCCAAACATGGAAGATTGGAGTCGACCAAGGGAACCTATGCAAAGGAGTGGGCTAAATGGGAGAAACAGTTGCGGGATATTTTATTTGGCAATGCTGAGTATCTTAATTCTGTTCAGGTTCCTTTTGAGTCTGCTGTAAAGGAAGTGTCAGAACAGCTGAAAAAAGTCGCAAAAGGTGAGTACAAAACTCCAGATACTGGGAAGAGGAAGTTCGGCGCCATTGTCTTTGCTGCCGTTAGCCTGCCTGTTATGGAAGTCAGTGGTCTGCTTGATAGCTTGGCTGCAAAAGATAGTGAAGCCGAAGCTTTCCTCAAAGACAAGCATTTGGATAAACTTAACAAGGCTCATGTTACTCTTGCACACAAGAGAAGTCATGGTGTTACTGCCGTGGCTAGTTACGGAACCTTCCTTCACAAAACGGTCCCTGTGGATATAACTAAGCTTTTCTTCTCGGATAAAATGGCTGCATTTGAAGCCAGCCTTGGGTCTGTCGAAGGCGAAAGAGTAGTGTCTAAAAATGAGTGGCCGCATGTCACCTTATGGACTGCAGAAGGGGTTCCGGCCAAGGATGCCAACAACTTACCCCAATTGCATTCGGAGGGGAAAGCTACCTGCATTGCAATTGACCCATCTGCCACCATTGATGGCACGCTGGAATTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

445

Amino Acids

49.05

Weight (kDa)

6.34

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_lig_CPD	PF08302	267 - 439	3.7e-07	Fungal tRNA ligase phosphodiesterase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07910 AT1G07910
fragaria_vesca	FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_3g33360 FvH4_4g02320
malus_domestica	MD03G1112400.v1.1 MD11G1129800.v1.1
prunus_persica	Prupe.6G094700_v2.0.a1
pyrus_communis	pycom11g10750 pycom11g10760
rosa_chinensis	RchiOBHm_Chr4g0389641 RchiOBHm_Chr5g0060751
rosa_laevigata	RLG00000009964 RLG00000035390
rosa_multiflora	Rmu_co8520825.1_g000001 Rmu_sc0006568.1_g000004 Rmu_sc0007419.1_g000006
rosa_roxburghii	Rroxscaffold_1G00019960 Rroxscaffold_5G00335630
rosa_rugosa	Rorug03G0324600 Rorug05G0333400
rosa_samantha	Rh4AG029200 Rh4BG022400 Rh4CG031200 Rh4DG022900 Rh5AG396400 Rh5BG408600 Rh5CG433200 Rh5DG423800
rosa_wichuraiana	Rw4G002180 Rw5G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1289
AccB1I	GGYRCC	1 cut(s)	884
AccB7I	CCANNNNNTGG	2 cut(s)	482, 866
AccI	GTMKAC	1 cut(s)	692
AccII	CGCG	1 cut(s)	350
AciI	CCGC	5 cut(s)	348, 350, 669, 742, 1196
AclWI	GGATC	2 cut(s)	17, 611
AcoI	YGGCCR	2 cut(s)	1193, 1230
AcsI	RAATTY	1 cut(s)	1325
AcuI	CTGAAG	3 cut(s)	261, 393, 611
AcyI	GRCGYC	1 cut(s)	885
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	6 cut(s)	63, 466, 482, 517, 866, 1152
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	6 cut(s)	155, 191, 320, 387, 437, 1142
AjnI	CCWGG	3 cut(s)	106, 115, 451
AjuI	GAANNNNNNNTTGG	2 cut(s)	1134, 1166
AluBI	AGCT	6 cut(s)	661, 826, 945, 974, 1111, 1277
AluI	AGCT	6 cut(s)	661, 826, 945, 974, 1111, 1277
Alw26I	GTCTC	3 cut(s)	168, 304, 429
AlwI	GGATC	2 cut(s)	17, 611
AlwNI	CAGNNNCTG	1 cut(s)	866
Ama87I	CYCGRG	2 cut(s)	160, 426
AoxI	GGCC	3 cut(s)	342, 1193, 1230
ApeKI	GCWGC	4 cut(s)	493, 899, 950, 1133
ApoI	RAATTY	1 cut(s)	1325
Asp700I	GAANNNNTTC	3 cut(s)	150, 382, 1224
AspLEI	GCGC	2 cut(s)	249, 887
AspS9I	GGNCC	2 cut(s)	342, 1090
AsuC2I	CCSGG	2 cut(s)	161, 162
AsuHPI	GGTGA	4 cut(s)	215, 500, 857, 1195
AvaI	CYCGRG	2 cut(s)	160, 426
AvaII	GGWCC	1 cut(s)	1090
AxyI	CCTNAGG	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	884
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	4 cut(s)	480, 886, 937, 1120
BccI	CCATC	5 cut(s)	49, 193, 536, 1306, 1307
BceAI	ACGGC	2 cut(s)	887, 1040
BciT130I	CCWGG	3 cut(s)	108, 117, 453
BcnI	CCSGG	2 cut(s)	161, 162
BcoDI	GTCTC	3 cut(s)	168, 304, 429
BfaI	CTAG	2 cut(s)	339, 1062
BfmI	CTRYAG	1 cut(s)	1215
BfoI	RGCGCY	1 cut(s)	888
BfuAI	ACCTGC	1 cut(s)	1289
BisI	GCNGC	5 cut(s)	494, 900, 951, 1134, 1196
BlsI	GCNGC	5 cut(s)	495, 901, 952, 1135, 1197
Bme1390I	CCNGG	5 cut(s)	108, 117, 161, 162, 453
Bme18I	GGWCC	1 cut(s)	1090
BmeT110I	CYCGRG	2 cut(s)	160, 426
BmgT120I	GGNCC	2 cut(s)	342, 1090
BmiI	GGNNCC	8 cut(s)	354, 379, 703, 789, 886, 1072, 1092, 1227
BmrFI	CCNGG	5 cut(s)	108, 117, 161, 162, 453
BmrI	ACTGGG	2 cut(s)	45, 876
BmsI	GCATC	3 cut(s)	394, 570, 1228
BmuI	ACTGGG	2 cut(s)	45, 876
BpmI	CTGGAG	2 cut(s)	656, 843
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	2 cut(s)	161, 162
Bsa29I	ATCGAT	1 cut(s)	12
BsaBI	GATNNNNATC	2 cut(s)	387, 603
BsaHI	GRCGYC	1 cut(s)	885
BsaJI	CCNNGG	6 cut(s)	160, 348, 696, 1056, 1150, 1233
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bsc4I	CCNNNNNNNGG	6 cut(s)	63, 466, 482, 517, 866, 1152
Bse1I	ACTGG	3 cut(s)	51, 356, 871
Bse21I	CCTNAGG	1 cut(s)	58
Bse3DI	GCAATG	3 cut(s)	584, 766, 1284
Bse8I	GATNNNNATC	2 cut(s)	387, 603
BseBI	CCWGG	3 cut(s)	108, 117, 453
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	6 cut(s)	160, 348, 696, 1056, 1150, 1233
BseGI	GGATG	2 cut(s)	448, 1243
BseJI	GATNNNNATC	2 cut(s)	387, 603
BseLI	CCNNNNNNNGG	6 cut(s)	63, 466, 482, 517, 866, 1152
BseMI	GCAATG	3 cut(s)	584, 766, 1284
BseMII	CTCAG	3 cut(s)	72, 75, 756
BseNI	ACTGG	3 cut(s)	51, 356, 871
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	4 cut(s)	480, 886, 937, 1120
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	3 cut(s)	344, 1195, 1232
BshNI	GGYRCC	1 cut(s)	884
BshVI	ATCGAT	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	181
BsiHKCI	CYCGRG	2 cut(s)	160, 426
BsiSI	CCGG	2 cut(s)	161, 1229
BslFI	GGGAC	2 cut(s)	80, 1076
BslI	CCNNNNNNNGG	6 cut(s)	63, 466, 482, 517, 866, 1152
BsmAI	GTCTC	3 cut(s)	168, 304, 429
BsmBI	CGTCTC	1 cut(s)	168
BsmFI	GGGAC	2 cut(s)	80, 1076
BsmI	GAATGC	2 cut(s)	292, 1261
BsnI	GGCC	3 cut(s)	344, 1195, 1232
BsoBI	CYCGRG	2 cut(s)	160, 426
Bsp143I	GATC	5 cut(s)	9, 13, 178, 205, 616
BspACI	CCGC	5 cut(s)	348, 350, 669, 742, 1196
BspANI	GGCC	3 cut(s)	344, 1195, 1232
BspCNI	CTCAG	3 cut(s)	71, 76, 757
BspDI	ATCGAT	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	8 cut(s)	354, 379, 703, 789, 886, 1072, 1092, 1227
BspMAI	CTGCAG	1 cut(s)	1219
BspMI	ACCTGC	1 cut(s)	1289
BspPI	GGATC	2 cut(s)	17, 611
BspQI	GCTCTTC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	884
BsrDI	GCAATG	3 cut(s)	584, 766, 1284
BsrI	ACTGG	3 cut(s)	51, 356, 871
BssECI	CCNNGG	6 cut(s)	160, 348, 696, 1056, 1150, 1233
BssMI	GATC	5 cut(s)	9, 13, 178, 205, 616
BssNI	GRCGYC	1 cut(s)	885
BssT1I	CCWWGG	3 cut(s)	696, 1150, 1233
Bst2UI	CCWGG	3 cut(s)	108, 117, 453
Bst4CI	ACNGT	2 cut(s)	738, 1090
Bst6I	CTCTTC	2 cut(s)	237, 866
BstACI	GRCGYC	1 cut(s)	885
BstC8I	GCNNGC	4 cut(s)	484, 911, 1147, 1319
BstDEI	CTNAG	5 cut(s)	58, 84, 126, 765, 1107
BstDSI	CCRYGG	2 cut(s)	348, 1056
BstENI	CCTNNNNNAGG	3 cut(s)	61, 464, 515
BstF5I	GGATG	2 cut(s)	448, 1243
BstFNI	CGCG	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	888
BstHHI	GCGC	2 cut(s)	249, 887
BstKTI	GATC	5 cut(s)	12, 16, 181, 208, 619
BstMAI	GTCTC	3 cut(s)	168, 304, 429
BstMBI	GATC	5 cut(s)	9, 13, 178, 205, 616
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 528, 1142, 1238
BstNI	CCWGG	3 cut(s)	108, 117, 453
BstNSI	RCATGY	2 cut(s)	328, 1202
BstSCI	CCNGG	5 cut(s)	106, 115, 159, 160, 451
BstSFI	CTRYAG	1 cut(s)	1215
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	4 cut(s)	480, 886, 937, 1120
Bsu15I	ATCGAT	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	344, 1195, 1232
BsuTUI	ATCGAT	1 cut(s)	12
BtgI	CCRYGG	2 cut(s)	348, 1056
BtsCI	GGATG	2 cut(s)	448, 1243
BtsIMutI	CAGTG	2 cut(s)	58, 934
BveI	ACCTGC	1 cut(s)	1289
Cac8I	GCNNGC	4 cut(s)	484, 911, 1147, 1319
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	2 cut(s)	249, 887
Cfr13I	GGNCC	2 cut(s)	342, 1090
Cfr42I	CCGCGG	1 cut(s)	351
Cfr9I	CCCGGG	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	12
CsiI	ACCWGGT	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	850
CviAII	CATG	6 cut(s)	325, 421, 677, 1016, 1043, 1199
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	5 cut(s)	58, 84, 126, 765, 1107
DinI	GGCGCC	1 cut(s)	886
DpnI	GATC	5 cut(s)	11, 15, 180, 207, 618
DpnII	GATC	5 cut(s)	9, 13, 178, 205, 616
EaeI	YGGCCR	2 cut(s)	1193, 1230
Eam1104I	CTCTTC	2 cut(s)	237, 866
EarI	CTCTTC	2 cut(s)	237, 866
Eco130I	CCWWGG	3 cut(s)	696, 1150, 1233
Eco47I	GGWCC	1 cut(s)	1090
Eco57I	CTGAAG	3 cut(s)	261, 393, 611
Eco81I	CCTNAGG	1 cut(s)	58
Eco88I	CYCGRG	2 cut(s)	160, 426
EcoNI	CCTNNNNNAGG	3 cut(s)	61, 464, 515
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	3 cut(s)	106, 115, 451
EcoT14I	CCWWGG	3 cut(s)	696, 1150, 1233
EcoT22I	ATGCAT	1 cut(s)	409
EgeI	GGCGCC	1 cut(s)	886
EheI	GGCGCC	1 cut(s)	886
ErhI	CCWWGG	3 cut(s)	696, 1150, 1233
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	6 cut(s)	328, 424, 680, 1019, 1046, 1202
FalI	AAGNNNNNCTT	4 cut(s)	1100, 1132, 1134, 1166
FaqI	GGGAC	2 cut(s)	80, 1076
FatI	CATG	6 cut(s)	324, 420, 676, 1015, 1042, 1198
FauI	CCCGC	1 cut(s)	735
FblI	GTMKAC	1 cut(s)	692
Fnu4HI	GCNGC	5 cut(s)	494, 900, 951, 1134, 1196
FokI	GGATG	2 cut(s)	435, 1250
Fsp4HI	GCNGC	5 cut(s)	494, 900, 951, 1134, 1196
FspBI	CTAG	2 cut(s)	339, 1062
GlaI	GCGC	2 cut(s)	248, 886
GluI	GCNGC	5 cut(s)	494, 900, 951, 1134, 1196
GsuI	CTGGAG	2 cut(s)	656, 843
HaeII	RGCGCY	1 cut(s)	888
HaeIII	GGCC	3 cut(s)	344, 1195, 1232
HapII	CCGG	2 cut(s)	161, 1229
HhaI	GCGC	2 cut(s)	249, 887
Hin1I	GRCGYC	1 cut(s)	885
Hin1II	CATG	6 cut(s)	328, 424, 680, 1019, 1046, 1202
Hin6I	GCGC	2 cut(s)	247, 885
HinP1I	GCGC	2 cut(s)	247, 885
HincII	GTYRAC	1 cut(s)	693
HindII	GTYRAC	1 cut(s)	693
HindIII	AAGCTT	3 cut(s)	659, 972, 1109
HinfI	GANTC	7 cut(s)	368, 383, 470, 526, 604, 689, 797
HpaII	CCGG	2 cut(s)	161, 1229
HphI	GGTGA	4 cut(s)	215, 500, 857, 1195
Hpy166II	GTNNAC	1 cut(s)	693
Hpy188I	TCNGA	6 cut(s)	93, 373, 598, 820, 1123, 1267
Hpy188III	TCNNGA	6 cut(s)	17, 155, 401, 577, 635, 860
Hpy8I	GTNNAC	1 cut(s)	693
HpyAV	CCTTC	6 cut(s)	226, 368, 1084, 1088, 1157, 1214
HpyCH4III	ACNGT	2 cut(s)	738, 1090
HpyCH4IV	ACGT	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 528, 1142, 1238
HpyF3I	CTNAG	5 cut(s)	58, 84, 126, 765, 1107
HpySE526I	ACGT	1 cut(s)	439
Hsp92I	GRCGYC	1 cut(s)	885
Hsp92II	CATG	6 cut(s)	328, 424, 680, 1019, 1046, 1202
HspAI	GCGC	2 cut(s)	247, 885
KasI	GGCGCC	1 cut(s)	884
KspI	CCGCGG	1 cut(s)	351
Kzo9I	GATC	5 cut(s)	9, 13, 178, 205, 616
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	4 cut(s)	480, 886, 937, 1120
LweI	GCATC	3 cut(s)	394, 570, 1228
MabI	ACCWGGT	1 cut(s)	115
MaeI	CTAG	2 cut(s)	339, 1062
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	4 cut(s)	1018, 1048, 1064, 1201
MalI	GATC	5 cut(s)	11, 15, 180, 207, 618
MboI	GATC	5 cut(s)	9, 13, 178, 205, 616
MboII	GAAGA	7 cut(s)	16, 254, 311, 637, 693, 883, 1108
MfeI	CAATTG	2 cut(s)	1256, 1290
MluCI	AATT	8 cut(s)	186, 270, 414, 548, 775, 1256, 1290, 1325
Mly113I	GGCGCC	1 cut(s)	885
MlyI	GAGTC	3 cut(s)	535, 698, 806
Mph1103I	ATGCAT	1 cut(s)	409
MroXI	GAANNNNTTC	3 cut(s)	150, 382, 1224
MseI	TTAA	2 cut(s)	774, 1005
MspA1I	CMGCKG	2 cut(s)	350, 826
MspI	CCGG	2 cut(s)	161, 1229
MspR9I	CCNGG	5 cut(s)	108, 117, 161, 162, 453
MunI	CAATTG	2 cut(s)	1256, 1290
Mva1269I	GAATGC	2 cut(s)	292, 1261
MvaI	CCWGG	3 cut(s)	108, 117, 453
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	4 cut(s)	131, 528, 1142, 1238
NarI	GGCGCC	1 cut(s)	885
NciI	CCSGG	2 cut(s)	161, 162
NdeII	GATC	5 cut(s)	9, 13, 178, 205, 616
NlaIII	CATG	6 cut(s)	328, 424, 680, 1019, 1046, 1202
NlaIV	GGNNCC	8 cut(s)	354, 379, 703, 789, 886, 1072, 1092, 1227
NmuCI	GTSAC	1 cut(s)	1201
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	2 cut(s)	328, 1202
PciI	ACATGT	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	237
PctI	GAATGC	2 cut(s)	292, 1261
PdmI	GAANNNNTTC	3 cut(s)	150, 382, 1224
PfeI	GAWTC	4 cut(s)	368, 383, 470, 604
PflMI	CCANNNNNTGG	2 cut(s)	482, 866
PfoI	TCCNGGA	2 cut(s)	106, 451
PkrI	GCNGC	5 cut(s)	495, 901, 952, 1135, 1197
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	3 cut(s)	534, 697, 805
PluTI	GGCGCC	1 cut(s)	888
PpsI	GAGTC	3 cut(s)	534, 697, 805
PscI	ACATGT	1 cut(s)	324
Psp6I	CCWGG	3 cut(s)	106, 115, 451
PspGI	CCWGG	3 cut(s)	106, 115, 451
PspN4I	GGNNCC	8 cut(s)	354, 379, 703, 789, 886, 1072, 1092, 1227
PspPI	GGNCC	2 cut(s)	342, 1090
PstI	CTGCAG	1 cut(s)	1219
PstNI	CAGNNNCTG	1 cut(s)	866
PvuI	CGATCG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	826
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
SacII	CCGCGG	1 cut(s)	351
SalI	GTCGAC	1 cut(s)	691
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	774, 1005
SatI	GCNGC	5 cut(s)	494, 900, 951, 1134, 1196
Sau3AI	GATC	5 cut(s)	9, 13, 178, 205, 616
Sau96I	GGNCC	2 cut(s)	342, 1090
SchI	GAGTC	3 cut(s)	535, 698, 806
ScrFI	CCNGG	5 cut(s)	108, 117, 161, 162, 453
SexAI	ACCWGGT	1 cut(s)	115
SfaNI	GCATC	3 cut(s)	394, 570, 1228
SfcI	CTRYAG	1 cut(s)	1215
SfoI	GGCGCC	1 cut(s)	886
Sfr303I	CCGCGG	1 cut(s)	351
SgrBI	CCGCGG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	1090
SmaI	CCCGGG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	8 cut(s)	186, 270, 414, 548, 775, 1256, 1290, 1325
SsiI	CCGC	5 cut(s)	348, 350, 669, 742, 1196
SspDI	GGCGCC	1 cut(s)	884
SspI	AATATT	2 cut(s)	224, 631
SspMI	CTAG	2 cut(s)	339, 1062
StyD4I	CCNGG	5 cut(s)	106, 115, 159, 160, 451
StyI	CCWWGG	3 cut(s)	696, 1150, 1233
TaaI	ACNGT	2 cut(s)	738, 1090
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	4 cut(s)	12, 181, 692, 1161
TasI	AATT	8 cut(s)	186, 270, 414, 548, 775, 1256, 1290, 1325
TatI	WGTACW	1 cut(s)	849
TauI	GCSGC	1 cut(s)	1198
TfiI	GAWTC	4 cut(s)	368, 383, 470, 604
Tru1I	TTAA	2 cut(s)	774, 1005
Tru9I	TTAA	2 cut(s)	774, 1005
TscAI	CASTG	2 cut(s)	58, 934
TseFI	GTSAC	1 cut(s)	1201
TseI	GCWGC	4 cut(s)	493, 899, 950, 1133
Tsp45I	GTSAC	1 cut(s)	1201
TspDTI	ATGAA	3 cut(s)	17, 312, 409
TspGWI	ACGGA	2 cut(s)	158, 1083
TspMI	CCCGGG	1 cut(s)	160
TspRI	CASTG	2 cut(s)	58, 934
Van91I	CCANNNNNTGG	2 cut(s)	482, 866
VpaK11BI	GGWCC	1 cut(s)	1090
XagI	CCTNNNNNAGG	3 cut(s)	61, 464, 515
XapI	RAATTY	1 cut(s)	1325
XceI	RCATGY	2 cut(s)	328, 1202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmaI	CCCGGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	692
XmnI	GAANNNNTTC	3 cut(s)	150, 382, 1224
XspI	CTAG	2 cut(s)	339, 1062
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.