pycom11g11690

ABC transporter G family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003083
Physical Location & Seq
Reverse (-)
10459393 .. 10460557
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
ATGATTTTTGCAGGATTAATTTTCATCTTTCTCGTTATATATAATTTTTCTGACCAAGTTCTTGCCACCCGAGAAAAAAGACAAGCAAAATCCAGGGAAAGAGCAGTTGAAAGTGTAAGAGAAAATGCACAAGTGCGTGAAAAATGGAAATCTGCAAAAGACATTGCTAAGAAGCATGCAGTTGGACTGTCAACACAGTTTTCACGTACATTTTCTCACAGAAAATCCACCAAGTCAGACCCGCTGAGAGGATTTGGACAGGCTAAACCTGGATCAGATGCTGCCTTGCCATCTATGCCAACCGGGATAGGTGAGCAATCAGCTGGAACATCTAAAGGAAAGGAAAAGGAAAAAAGAAACCTCACACAAATGATAAAAGCAATCGAGGAAGACCCAAATAGTCATGAAGGCTTCAATCTAGAAATAGGAGATAAAAACATTAAAAAGCAAGCACCAAAAGCACCGAAAGGTAAGCAGTTGCATACTCAGAGTCAAATATTCAAGTATGCATATGGTCAAATTGAGAAGGAAAAGGCATTACAGGAGCAGAATGCGAACTTAACCTTCTCCGGGGTCATACAAATGGCTGGTGATCTTGAAATCAGGAAGAGACCTCCCATTGAGGTTGTTTTTAAAGATCTAACTCTCACGTTGAAAGGGAAAAACAAACATCTTTTGAGGTGTGTGAGTGGGAAAATATCGCCTGGCCGGGTTTCAGCTGTCATGGGTCCATCTGGGGCTGGAAAAACAACATTTCTTTCTGCCTTGGTTGGAAAATTGAGGGGGTGCACAGTGAGTGGTATGATACTTGTAAATGGAAAGATGGAAGCTATCCACTGTTACAAGAAAATCATTGGCTTTGTGCCACAAGATGATATTGTGCATGGAAATTTGACAGTTGAAGAGAATCTCTGGTTTAGCGCAAGATGCAGGTATGCAACCACTTTGTATAGTTGCTGGTAG

Protein Analysis

321

Amino Acids

35.47

Weight (kDa)

9.83

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 228 - 310 2.8e-11 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 921
AciI CCGC 1 cut(s) 242
AclWI GGATC 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 706
AcsI RAATTY 1 cut(s) 889
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 248, 570
AgsI TTSAA 6 cut(s) 110, 415, 502, 599, 655, 902
AjnI CCWGG 3 cut(s) 92, 268, 703
AluBI AGCT 3 cut(s) 323, 719, 830
AluI AGCT 3 cut(s) 323, 719, 830
Alw21I GWGCWC 1 cut(s) 791
Alw26I GTCTC 1 cut(s) 604
Alw44I GTGCAC 1 cut(s) 787
AlwI GGATC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 69
AoxI GGCC 1 cut(s) 706
ApaLI GTGCAC 1 cut(s) 787
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 889
AseI ATTAAT 1 cut(s) 17
AspLEI GCGC 1 cut(s) 923
AspS9I GGNCC 1 cut(s) 728
AsuC2I CCSGG 3 cut(s) 304, 571, 710
AsuHPI GGTGA 2 cut(s) 323, 602
AvaI CYCGRG 1 cut(s) 69
AvaII GGWCC 1 cut(s) 728
BaeGI GKGCMC 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 791
BbvI GCAGC 1 cut(s) 268
BccI CCATC 3 cut(s) 298, 739, 817
BciT130I CCWGG 3 cut(s) 94, 270, 705
BcnI CCSGG 3 cut(s) 304, 571, 710
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 1 cut(s) 419
BfuAI ACCTGC 1 cut(s) 921
BglII AGATCT 1 cut(s) 637
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 6 cut(s) 94, 270, 304, 571, 705, 710
Bme18I GGWCC 1 cut(s) 728
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 728
BmiI GGNNCC 1 cut(s) 729
BmrFI CCNGG 6 cut(s) 94, 270, 304, 571, 705, 710
BmsI GCATC 2 cut(s) 268, 917
BpiI GAAGAC 1 cut(s) 396
BpuMI CCSGG 3 cut(s) 304, 571, 710
BsaAI YACGTR 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 3 cut(s) 93, 570, 765
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 570
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 3 cut(s) 94, 270, 705
BseDI CCNNGG 3 cut(s) 93, 570, 765
BseLI CCNNNNNNNGG 2 cut(s) 248, 570
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 2 cut(s) 236, 500
BseSI GKGCMC 1 cut(s) 791
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 791
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 3 cut(s) 303, 570, 709
BslI CCNNNNNNNGG 2 cut(s) 248, 570
BsmAI GTCTC 1 cut(s) 604
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 1 cut(s) 708
Bso31I GGTCTC 1 cut(s) 604
BsoBI CYCGRG 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 791
Bsp143I GATC 3 cut(s) 272, 592, 637
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 708
BspCNI CTCAG 2 cut(s) 237, 499
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 729
BspMI ACCTGC 1 cut(s) 921
BspPI GGATC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 604
BsrDI GCAATG 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 93, 570, 765
BssMI GATC 3 cut(s) 272, 592, 637
BssT1I CCWWGG 1 cut(s) 765
Bst2UI CCWGG 3 cut(s) 94, 270, 705
Bst4CI ACNGT 5 cut(s) 189, 198, 793, 839, 898
Bst6I CTCTTC 2 cut(s) 602, 897
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 177, 450
BstDEI CTNAG 3 cut(s) 168, 245, 486
BstHHI GCGC 1 cut(s) 923
BstKTI GATC 3 cut(s) 275, 595, 640
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 3 cut(s) 272, 592, 637
BstMWI GCNNNNNNNGC 3 cut(s) 295, 458, 927
BstNI CCWGG 3 cut(s) 94, 270, 705
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 6 cut(s) 92, 268, 302, 569, 703, 708
BstSLI GKGCMC 1 cut(s) 791
BstV1I GCAGC 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 798, 835
BveI ACCTGC 1 cut(s) 921
Cac8I GCNNGC 2 cut(s) 177, 450
CaiI CAGNNNCTG 1 cut(s) 281
CciI TCATGA 1 cut(s) 403
CfoI GCGC 1 cut(s) 923
Cfr13I GGNCC 1 cut(s) 728
Csp6I GTAC 1 cut(s) 207
CviAII CATG 4 cut(s) 176, 404, 724, 884
CviJI RGCY 9 cut(s) 263, 323, 411, 587, 708, 719, 740, 830, 858
CviKI_1 RGCY 9 cut(s) 263, 323, 411, 587, 708, 719, 740, 830, 858
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 3 cut(s) 168, 245, 486
DpnI GATC 3 cut(s) 274, 594, 639
DpnII GATC 3 cut(s) 272, 592, 637
DraI TTTAAA 1 cut(s) 634
EaeI YGGCCR 1 cut(s) 706
Eam1104I CTCTTC 2 cut(s) 602, 897
EarI CTCTTC 2 cut(s) 602, 897
Eco130I CCWWGG 1 cut(s) 765
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 728
Eco88I CYCGRG 1 cut(s) 69
EcoRII CCWGG 3 cut(s) 92, 268, 703
EcoT14I CCWWGG 1 cut(s) 765
EcoT22I ATGCAT 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 4 cut(s) 179, 407, 727, 887
FatI CATG 4 cut(s) 175, 403, 723, 883
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 1 cut(s) 511
Fnu4HI GCNGC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 1 cut(s) 419
GlaI GCGC 1 cut(s) 922
GluI GCNGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 708
HapII CCGG 3 cut(s) 303, 570, 709
HhaI GCGC 1 cut(s) 923
Hin1II CATG 4 cut(s) 179, 407, 727, 887
Hin6I GCGC 1 cut(s) 921
HinP1I GCGC 1 cut(s) 921
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 2 cut(s) 490, 907
HpaII CCGG 3 cut(s) 303, 570, 709
HphI GGTGA 2 cut(s) 323, 602
Hpy166II GTNNAC 2 cut(s) 192, 789
Hpy188I TCNGA 4 cut(s) 52, 238, 277, 489
Hpy188III TCNNGA 4 cut(s) 404, 419, 596, 604
Hpy8I GTNNAC 2 cut(s) 192, 789
HpyAV CCTTC 3 cut(s) 401, 520, 574
HpyCH4III ACNGT 5 cut(s) 189, 198, 793, 839, 898
HpyCH4IV ACGT 2 cut(s) 205, 650
HpyF10VI GCNNNNNNNGC 3 cut(s) 295, 458, 927
HpyF3I CTNAG 3 cut(s) 168, 245, 486
HpySE526I ACGT 2 cut(s) 205, 650
Hsp92II CATG 4 cut(s) 179, 407, 727, 887
HspAI GCGC 1 cut(s) 921
Kzo9I GATC 3 cut(s) 272, 592, 637
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 2 cut(s) 268, 917
MaeI CTAG 1 cut(s) 419
MaeII ACGT 2 cut(s) 205, 650
MaeIII GTNAC 1 cut(s) 839
MalI GATC 3 cut(s) 274, 594, 639
MboI GATC 3 cut(s) 272, 592, 637
MboII GAAGA 3 cut(s) 401, 619, 914
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 1 cut(s) 791
MluCI AATT 5 cut(s) 18, 43, 519, 776, 889
MlyI GAGTC 1 cut(s) 499
MmeI TCCRAC 2 cut(s) 163, 751
MnlI CCTC 7 cut(s) 242, 371, 379, 616, 624, 672, 774
Mph1103I ATGCAT 1 cut(s) 511
MseI TTAA 4 cut(s) 17, 441, 560, 633
MslI CAYNNNNRTG 2 cut(s) 368, 581
MspA1I CMGCKG 3 cut(s) 244, 323, 719
MspI CCGG 3 cut(s) 303, 570, 709
MspR9I CCNGG 6 cut(s) 94, 270, 304, 571, 705, 710
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 3 cut(s) 94, 270, 705
MwoI GCNNNNNNNGC 3 cut(s) 295, 458, 927
NciI CCSGG 3 cut(s) 304, 571, 710
NdeI CATATG 1 cut(s) 511
NdeII GATC 3 cut(s) 272, 592, 637
NlaIII CATG 4 cut(s) 179, 407, 727, 887
NlaIV GGNNCC 1 cut(s) 729
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 1 cut(s) 179
PaeI GCATGC 1 cut(s) 179
PagI TCATGA 1 cut(s) 403
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 1 cut(s) 907
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 1 cut(s) 498
PpsI GAGTC 1 cut(s) 498
Ppu21I YACGTR 1 cut(s) 206
PshBI ATTAAT 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 92, 268, 703
PspGI CCWGG 3 cut(s) 92, 268, 703
PspN4I GGNNCC 1 cut(s) 729
PspPI GGNCC 1 cut(s) 728
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 637
PvuII CAGCTG 2 cut(s) 323, 719
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
RseI CAYNNNNRTG 2 cut(s) 368, 581
SaqAI TTAA 4 cut(s) 17, 441, 560, 633
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 3 cut(s) 272, 592, 637
Sau96I GGNCC 1 cut(s) 728
SchI GAGTC 1 cut(s) 499
ScrFI CCNGG 6 cut(s) 94, 270, 304, 571, 705, 710
SduI GDGCHC 1 cut(s) 791
SfaNI GCATC 2 cut(s) 268, 917
SinI GGWCC 1 cut(s) 728
SmiMI CAYNNNNRTG 2 cut(s) 368, 581
SphI GCATGC 1 cut(s) 179
Sse9I AATT 5 cut(s) 18, 43, 519, 776, 889
SsiI CCGC 1 cut(s) 242
SspI AATATT 1 cut(s) 498
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 6 cut(s) 92, 268, 302, 569, 703, 708
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 5 cut(s) 189, 198, 793, 839, 898
TaiI ACGT 2 cut(s) 208, 653
TaqI TCGA 1 cut(s) 384
TasI AATT 5 cut(s) 18, 43, 519, 776, 889
TfiI GAWTC 1 cut(s) 907
Tru1I TTAA 4 cut(s) 17, 441, 560, 633
Tru9I TTAA 4 cut(s) 17, 441, 560, 633
TscAI CASTG 2 cut(s) 798, 842
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 13, 420
TspRI CASTG 2 cut(s) 798, 842
VneI GTGCAC 1 cut(s) 787
VpaK11BI GGWCC 1 cut(s) 728
VspI ATTAAT 1 cut(s) 17
XapI RAATTY 1 cut(s) 889
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 179
XspI CTAG 1 cut(s) 419
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.