Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Forward (+)

17009753 .. 17016415

Gene Structure 6663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGATGGGCTACAAAGCCCAAGTGGTGGCATCGGCCATTGCTTTGCCAATTTGCCGGAAAATCGAAAAGGGTGGTCGGAGCACCATTGATTTTCGTCAACTTTCGTGGCCTCAAACCGCCCCATACCATGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGATGAGGAACCTGAGGAACAGGACGTCGACATTGAGAACCAATATTACAACTCTAAAGGTTTGGTTGAGACAGATCCAGAAGGAGCACTTTCGGGGTTCGATGAAGTTGTTCGCATGGAGCCTGAGAAGGCCGAGTGGTCAATGGTAAAGGTCAGTGGTAATCTACAGTTTGAAGGTGGAAGAGTTTATTTCACTGTTAGAAAGGTGGAAGAGGCTAGTCAGAACTTTGGTCTCCTGCAAGAGTTCTATCAGACCACTCTAAAGGCCCTCGAAGAGGCAAAGAATGAGAGACTTTGGTTTAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGGGTGAATATGGGCGAATGAGTAAGATTTTGAAGGAACTCCATAAATCCTGTCAAAAGGAAGATGGTACTGATGACCAAAAGAAAGGAAGTCAACTCCTAGAGCAATTATACCAAAAAGCTCTTGCAATCAAGTCAGCAATACCTCATCCTAGGATCATGGGAATAATTCGTGAGTGTGGGGGTAAGATGCATATGGCTGAGCGTCAGTGGGCAGATGCAGCCACAGATTTTTTTGAAGCCTTTAAGAACTACGATGAAGCTGGGAACCAGAGGCGTATACAATGCTTGAAGTACTTAGTTCTGGCTAATATGCTGATGGAGTCAGAAGTTAATCCATTTGATGGTCAAGAAGCGAAGCCGTATAAAAACGATCCTGAGATCTTGGCAATGACAAATCTGATTGCAGCATATCAACGAAATGAGATACTGGAGTTTGAGAAAATTCTTAAGAGTAACAGGAGGACAATTATGGATGATCCATTCATCCGAAACTATATTGAAGATCTGTTGAAGAATGTTAGGACACAAGTGTTGCTCAAACTTATCAAGCCGTACACAAGAATTCGGATTCCCTTCATATCAAAGGAACTTAATGTTCCGGAGAAAGATGTGGAGCAACTTTTGGTTTCACTTATATTGGATAACCGAATTGATGGACATATTGATCAGGTGAACCGGCTCTTAGAGCGTGGTGACAGGTCAAAGGGTATGAAGAAGTATGCTGCCGTAGATAAATGGAACACTCAGCTAAGGTCTCTTTACCAAACTATCAGTAACCGAGTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

431

Amino Acids

50.03

Weight (kDa)

5.7

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	317 - 397	1.5e-23	PCI domain
COPS2_C	PF25983	405 - 429	1.6e-13	COP9 signalosome complex subunit 2, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	192
AccB7I	CCANNNNNTGG	2 cut(s)	25, 845
AccI	GTMKAC	2 cut(s)	192, 781
AccIII	TCCGGA	1 cut(s)	1102
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	4 cut(s)	233, 665, 869, 974
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	3 cut(s)	489, 945, 1065
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	4 cut(s)	161, 571, 797, 1058
AfiI	CCNNNNNNNGG	3 cut(s)	25, 439, 845
AflII	CTTAAG	2 cut(s)	476, 950
AgsI	TTSAA	6 cut(s)	338, 535, 740, 793, 1004, 1015
AluBI	AGCT	4 cut(s)	481, 623, 764, 1252
AluI	AGCT	4 cut(s)	481, 623, 764, 1252
Alw21I	GWGCWC	2 cut(s)	83, 253
Alw26I	GTCTC	4 cut(s)	227, 401, 448, 1263
AlwI	GGATC	4 cut(s)	233, 665, 869, 974
Aor13HI	TCCGGA	1 cut(s)	1102
AoxI	GGCC	4 cut(s)	33, 107, 294, 429
ApeKI	GCWGC	3 cut(s)	722, 908, 1226
ApoI	RAATTY	3 cut(s)	489, 945, 1065
Asp700I	GAANNNNTTC	1 cut(s)	273
AspA2I	CCTAGG	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	518, 1186, 1208
AvrII	CCTAGG	1 cut(s)	653
AxyI	CCTNAGG	1 cut(s)	177
BaeI	ACNNNNGTAYC	2 cut(s)	920, 953
Bbv12I	GWGCWC	2 cut(s)	83, 253
BbvI	GCAGC	3 cut(s)	734, 920, 1213
BccI	CCATC	4 cut(s)	560, 814, 839, 1151
BceAI	ACGGC	3 cut(s)	847, 1039, 1214
BclI	TGATCA	1 cut(s)	1168
BcoDI	GTCTC	4 cut(s)	227, 401, 448, 1263
BfaI	CTAG	3 cut(s)	381, 602, 654
BfmI	CTRYAG	1 cut(s)	329
BfrI	CTTAAG	2 cut(s)	476, 950
BglII	AGATCT	2 cut(s)	882, 1006
BisI	GCNGC	3 cut(s)	723, 909, 1227
BlnI	CCTAGG	1 cut(s)	653
BlpI	GCTNAGC	1 cut(s)	702
BlsI	GCNGC	3 cut(s)	724, 910, 1228
BmcAI	AGTACT	2 cut(s)	161, 797
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	3 cut(s)	174, 285, 770
BmsI	GCATC	4 cut(s)	38, 121, 681, 709
BpmI	CTGGAG	1 cut(s)	953
Bpu10I	CCTNAGC	1 cut(s)	1253
Bpu1102I	GCTNAGC	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	2 cut(s)	401, 1263
BsaJI	CCNNGG	1 cut(s)	653
BsaWI	WCCGGW	1 cut(s)	1102
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 439, 845
Bse118I	RCCGGY	1 cut(s)	1179
Bse1I	ACTGG	1 cut(s)	936
Bse21I	CCTNAGG	1 cut(s)	177
Bse3DI	GCAATG	2 cut(s)	36, 897
BseAI	TCCGGA	1 cut(s)	1102
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	4 cut(s)	172, 649, 982, 987
BseLI	CCNNNNNNNGG	3 cut(s)	25, 439, 845
BseMI	GCAATG	2 cut(s)	36, 897
BseMII	CTCAG	5 cut(s)	168, 279, 693, 870, 1262
BseNI	ACTGG	1 cut(s)	936
BseXI	GCAGC	3 cut(s)	734, 920, 1213
BseYI	CCCAGC	1 cut(s)	764
BshFI	GGCC	4 cut(s)	35, 109, 296, 431
BsiHKAI	GWGCWC	2 cut(s)	83, 253
BsiSI	CCGG	3 cut(s)	55, 1103, 1180
BslI	CCNNNNNNNGG	3 cut(s)	25, 439, 845
BsmAI	GTCTC	4 cut(s)	227, 401, 448, 1263
BsnI	GGCC	4 cut(s)	35, 109, 296, 431
Bso31I	GGTCTC	2 cut(s)	401, 1263
Bsp1286I	GDGCHC	2 cut(s)	83, 253
Bsp13I	TCCGGA	1 cut(s)	1102
Bsp143I	GATC	7 cut(s)	238, 657, 874, 882, 979, 1006, 1168
Bsp1720I	GCTNAGC	1 cut(s)	702
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	4 cut(s)	35, 109, 296, 431
BspCNI	CTCAG	5 cut(s)	169, 280, 694, 871, 1261
BspEI	TCCGGA	1 cut(s)	1102
BspLI	GGNNCC	3 cut(s)	174, 285, 770
BspPI	GGATC	4 cut(s)	233, 665, 869, 974
BspTI	CTTAAG	2 cut(s)	476, 950
BspTNI	GGTCTC	2 cut(s)	401, 1263
BsrDI	GCAATG	2 cut(s)	36, 897
BsrFI	RCCGGY	1 cut(s)	1179
BsrI	ACTGG	1 cut(s)	936
BssAI	RCCGGY	1 cut(s)	1179
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	7 cut(s)	238, 657, 874, 882, 979, 1006, 1168
BssNAI	GTATAC	1 cut(s)	782
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	653
Bst1107I	GTATAC	1 cut(s)	782
Bst4CI	ACNGT	2 cut(s)	333, 361
Bst6I	CTCTTC	3 cut(s)	340, 369, 432
BstACI	GRCGYC	1 cut(s)	189
BstAFI	CTTAAG	2 cut(s)	476, 950
BstDEI	CTNAG	8 cut(s)	177, 288, 702, 799, 879, 1186, 1248, 1253
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstF5I	GGATG	4 cut(s)	172, 649, 982, 987
BstKTI	GATC	7 cut(s)	241, 660, 877, 885, 982, 1009, 1171
BstMAI	GTCTC	4 cut(s)	227, 401, 448, 1263
BstMBI	GATC	7 cut(s)	238, 657, 874, 882, 979, 1006, 1168
BstMWI	GCNNNNNNNGC	2 cut(s)	722, 1189
BstSFI	CTRYAG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	734, 920, 1213
BstX2I	RGATCY	3 cut(s)	238, 882, 1006
BstYI	RGATCY	3 cut(s)	238, 882, 1006
BstZ17I	GTATAC	1 cut(s)	782
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	4 cut(s)	35, 109, 296, 431
BtsCI	GGATG	4 cut(s)	172, 649, 982, 987
BtsIMutI	CAGTG	3 cut(s)	325, 357, 716
Cfr10I	RCCGGY	1 cut(s)	1179
Cfr13I	GGNCC	1 cut(s)	430
CseI	GACGC	1 cut(s)	695
Csp6I	GTAC	4 cut(s)	160, 570, 796, 1057
CspCI	CAANNNNNGTGG	2 cut(s)	86, 121
CviAII	CATG	3 cut(s)	128, 280, 661
CviQI	GTAC	4 cut(s)	160, 570, 796, 1057
DdeI	CTNAG	8 cut(s)	177, 288, 702, 799, 879, 1186, 1248, 1253
DpnI	GATC	7 cut(s)	240, 659, 876, 884, 981, 1008, 1170
DpnII	GATC	7 cut(s)	238, 657, 874, 882, 979, 1006, 1168
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	3 cut(s)	340, 369, 432
EarI	CTCTTC	3 cut(s)	340, 369, 432
Eco130I	CCWWGG	1 cut(s)	653
Eco31I	GGTCTC	2 cut(s)	401, 1263
Eco81I	CCTNAGG	1 cut(s)	177
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	1065
EcoT14I	CCWWGG	1 cut(s)	653
EcoT22I	ATGCAT	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	3 cut(s)	131, 283, 664
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	3 cut(s)	127, 279, 660
FauNDI	CATATG	1 cut(s)	696
FbaI	TGATCA	1 cut(s)	1168
FblI	GTMKAC	2 cut(s)	192, 781
Fnu4HI	GCNGC	3 cut(s)	723, 909, 1227
FokI	GGATG	4 cut(s)	179, 636, 974, 989
Fsp4HI	GCNGC	3 cut(s)	723, 909, 1227
FspBI	CTAG	3 cut(s)	381, 602, 654
GluI	GCNGC	3 cut(s)	723, 909, 1227
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	1 cut(s)	953
HaeIII	GGCC	4 cut(s)	35, 109, 296, 431
HapII	CCGG	3 cut(s)	55, 1103, 1180
HgaI	GACGC	1 cut(s)	695
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	131, 283, 664
HincII	GTYRAC	3 cut(s)	98, 193, 596
HindII	GTYRAC	3 cut(s)	98, 193, 596
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	3 cut(s)	153, 824, 1072
HpaII	CCGG	3 cut(s)	55, 1103, 1180
HphI	GGTGA	3 cut(s)	518, 1186, 1208
Hpy166II	GTNNAC	6 cut(s)	98, 193, 596, 782, 1059, 1177
Hpy188I	TCNGA	8 cut(s)	78, 166, 387, 417, 829, 903, 992, 1071
Hpy188III	TCNNGA	5 cut(s)	242, 674, 851, 878, 1103
Hpy8I	GTNNAC	6 cut(s)	98, 193, 596, 782, 1059, 1177
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	5 cut(s)	239, 286, 332, 529, 1087
HpyCH4III	ACNGT	2 cut(s)	333, 361
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	403, 486, 629, 694, 722, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	722, 1189
HpyF3I	CTNAG	8 cut(s)	177, 288, 702, 799, 879, 1186, 1248, 1253
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	131, 283, 664
Kpn2I	TCCGGA	1 cut(s)	1102
Ksp22I	TGATCA	1 cut(s)	1168
Kzo9I	GATC	7 cut(s)	238, 657, 874, 882, 979, 1006, 1168
LmnI	GCTCC	4 cut(s)	78, 248, 283, 1117
Lsp1109I	GCAGC	3 cut(s)	734, 920, 1213
LweI	GCATC	4 cut(s)	38, 121, 681, 709
MaeI	CTAG	3 cut(s)	381, 602, 654
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	956, 1196, 1277
MalI	GATC	7 cut(s)	240, 659, 876, 884, 981, 1008, 1170
MboI	GATC	7 cut(s)	238, 657, 874, 882, 979, 1006, 1168
MboII	GAAGA	7 cut(s)	357, 386, 449, 575, 1016, 1027, 1228
MflI	RGATCY	3 cut(s)	238, 882, 1006
MhlI	GDGCHC	2 cut(s)	83, 253
MluCI	AATT	8 cut(s)	48, 489, 608, 669, 945, 969, 1065, 1152
MlyI	GAGTC	1 cut(s)	833
MmeI	TCCRAC	1 cut(s)	56
Mph1103I	ATGCAT	1 cut(s)	696
MroI	TCCGGA	1 cut(s)	1102
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	6 cut(s)	465, 477, 747, 834, 951, 1095
MspCI	CTTAAG	2 cut(s)	476, 950
MspI	CCGG	3 cut(s)	55, 1103, 1180
MwoI	GCNNNNNNNGC	2 cut(s)	722, 1189
NdeI	CATATG	1 cut(s)	696
NdeII	GATC	7 cut(s)	238, 657, 874, 882, 979, 1006, 1168
NlaIII	CATG	3 cut(s)	131, 283, 664
NlaIV	GGNNCC	3 cut(s)	174, 285, 770
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	1196
NsiI	ATGCAT	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	153, 1072
PflMI	CCANNNNNTGG	2 cut(s)	25, 845
PkrI	GCNGC	3 cut(s)	724, 910, 1228
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	764
PspN4I	GGNNCC	3 cut(s)	174, 285, 770
PspPI	GGNCC	1 cut(s)	430
PsrI	GAACNNNNNNTAC	2 cut(s)	194, 226
PsuI	RGATCY	3 cut(s)	238, 882, 1006
RsaI	GTAC	4 cut(s)	161, 571, 797, 1058
RsaNI	GTAC	4 cut(s)	160, 570, 796, 1057
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	6 cut(s)	465, 477, 747, 834, 951, 1095
SatI	GCNGC	3 cut(s)	723, 909, 1227
Sau3AI	GATC	7 cut(s)	238, 657, 874, 882, 979, 1006, 1168
Sau96I	GGNCC	1 cut(s)	430
ScaI	AGTACT	2 cut(s)	161, 797
SchI	GAGTC	1 cut(s)	833
SduI	GDGCHC	2 cut(s)	83, 253
SfaNI	GCATC	4 cut(s)	38, 121, 681, 709
SfcI	CTRYAG	1 cut(s)	329
SmlI	CTYRAG	2 cut(s)	476, 950
SmoI	CTYRAG	2 cut(s)	476, 950
Sse9I	AATT	8 cut(s)	48, 489, 608, 669, 945, 969, 1065, 1152
SsiI	CCGC	1 cut(s)	117
SspI	AATATT	1 cut(s)	209
SspMI	CTAG	3 cut(s)	381, 602, 654
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	333, 361
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	63, 156, 192, 264, 435
TasI	AATT	8 cut(s)	48, 489, 608, 669, 945, 969, 1065, 1152
TatI	WGTACW	2 cut(s)	159, 795
TfiI	GAWTC	2 cut(s)	153, 1072
Tru1I	TTAA	6 cut(s)	465, 477, 747, 834, 951, 1095
Tru9I	TTAA	6 cut(s)	465, 477, 747, 834, 951, 1095
TscAI	CASTG	3 cut(s)	325, 364, 716
TseFI	GTSAC	1 cut(s)	1196
TseI	GCWGC	3 cut(s)	722, 908, 1226
Tsp45I	GTSAC	1 cut(s)	1196
TspDTI	ATGAA	5 cut(s)	282, 774, 976, 1069, 1229
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	3 cut(s)	325, 364, 716
Van91I	CCANNNNNTGG	2 cut(s)	25, 845
Vha464I	CTTAAG	2 cut(s)	476, 950
XagI	CCTNNNNNAGG	1 cut(s)	437
XapI	RAATTY	3 cut(s)	489, 945, 1065
XmaJI	CCTAGG	1 cut(s)	653
XmiI	GTMKAC	2 cut(s)	192, 781
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	3 cut(s)	381, 602, 654
ZraI	GACGTC	1 cut(s)	190
ZrmI	AGTACT	2 cut(s)	161, 797
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.