Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Forward (+)

17177336 .. 17182756

Gene Structure 5421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGGCTCCGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGATGAGGAACCTGAGGAACAGGACGTCGACATTGAGAACCAATATTACAACTCTAAAGGTTTGGTTGAGACAGATCCAGAAGGAGCACTTTCGGGGTTCGATGAAGTTGTTCGCATGGAGCCTGAGAAGGCCGAGTGGGGATTTAAAGCCTTGAAGCAAACCGTGAAGCTCTATTATCGTTTGGGGAGGTATAAAGAAATGATGGATGCATACAGGGTGATGTTGACATACATCAAATCAGCAGTAACAAGGAATTACAGTGAAAAATGTATAAACAATATTATGGATTTTGTTTCTGGTTCAGCTAGTCAGAACTTTGGTCTCCTGCAAGAGTTCTATCAGACCACTCTAAAGGCCCTCGAAGACGCAAAGAATGAGAGACTTTGGTTTAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGGGTGAATATGGGCGAATGAGTAAGATTTTGAAGGAACTCCATAAATCCTGTCAAAAGGAAGATGGTACTGATGACCAAAAGAAAGGAAGTCAACTCCTAGAGGTTTACGCTATTGAGATTCAAATGTACACTGAGACTAAAAATAACAAAAAGCTTAAGCAATTATACCAAAAAGCTCTTGCAATCAAGTCAGCAATACCTCATCCTAGGATCATGGGAATAATTCGTGAGTGCGGGGGTAAGATGCATATGGCTGAGCGTCAGTGGGCAGATGCAGCCACAGATTTTTTTGAAGCCTTTAAGAACTACGATGAAGCTGGGAACCAGAGGCGTATACAATGCTTGAAGTACTTAGTTCTGGCTAATATGCTGATGGAGTCAGAAGTTAATCCATTTGATGGTCAAGAAGCGAAGCCGTATAAAAACGATCCTGAGATCTTGGCAATGACAAATCTGATTGCAGCATATCAACGAAATGAGATACTGGAGTTTGAGAAAATTCTTAAGAGTAACAGGAGGACAATTATGGATGATCCATTCATCCGAAACTATATTGAAGATCTGTTGAAGAATGTTAGGACACAAGTGCTGCTCAAACTTATCAAGCCGTACACAAGAATTCGGATTCCCTTCATATCAACGAACTTAATGTTCCGGAGAAAGATGTGGAGCAACTTTTGGTTTCACTTATATTGGATAACCGAATTGATGGACATATTGATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

401

Amino Acids

47.3

Weight (kDa)

6.03

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	326 - 376	8.4e-09	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	872
AccI	GTMKAC	2 cut(s)	72, 808
AccIII	TCCGGA	1 cut(s)	1128
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	4 cut(s)	113, 692, 896, 1001
AcsI	RAATTY	3 cut(s)	459, 972, 1092
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	5 cut(s)	41, 541, 602, 824, 1085
AfiI	CCNNNNNNNGG	1 cut(s)	872
AflII	CTTAAG	3 cut(s)	446, 629, 977
AgsI	TTSAA	7 cut(s)	199, 505, 596, 767, 820, 1031, 1042
AluBI	AGCT	6 cut(s)	214, 350, 451, 628, 650, 791
AluI	AGCT	6 cut(s)	214, 350, 451, 628, 650, 791
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	4 cut(s)	107, 371, 418, 602
AlwI	GGATC	4 cut(s)	113, 692, 896, 1001
Aor13HI	TCCGGA	1 cut(s)	1128
AoxI	GGCC	2 cut(s)	174, 399
ApeKI	GCWGC	3 cut(s)	749, 935, 1063
ApoI	RAATTY	3 cut(s)	459, 972, 1092
Asp700I	GAANNNNTTC	1 cut(s)	153
AspA2I	CCTAGG	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	274, 488
AvrII	CCTAGG	1 cut(s)	680
AxyI	CCTNAGG	1 cut(s)	57
BaeI	ACNNNNGTAYC	2 cut(s)	947, 980
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	761, 947, 1050
BccI	CCATC	5 cut(s)	241, 530, 841, 866, 1177
BceAI	ACGGC	2 cut(s)	874, 1066
BclI	TGATCA	1 cut(s)	1194
BcoDI	GTCTC	4 cut(s)	107, 371, 418, 602
BfaI	CTAG	3 cut(s)	351, 572, 681
BfrI	CTTAAG	3 cut(s)	446, 629, 977
BglII	AGATCT	2 cut(s)	909, 1033
BisI	GCNGC	3 cut(s)	750, 936, 1064
BlnI	CCTAGG	1 cut(s)	680
BlpI	GCTNAGC	1 cut(s)	729
BlsI	GCNGC	3 cut(s)	751, 937, 1065
BmcAI	AGTACT	2 cut(s)	41, 824
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	4 cut(s)	7, 54, 165, 797
BmsI	GCATC	3 cut(s)	241, 708, 736
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	980
Bpu1102I	GCTNAGC	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	680
BsaWI	WCCGGW	1 cut(s)	1128
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse1I	ACTGG	1 cut(s)	963
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	924
BseAI	TCCGGA	1 cut(s)	1128
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	5 cut(s)	52, 256, 676, 1009, 1014
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	5 cut(s)	48, 159, 597, 720, 897
BseNI	ACTGG	1 cut(s)	963
BseXI	GCAGC	3 cut(s)	761, 947, 1050
BseYI	CCCAGC	1 cut(s)	791
BshFI	GGCC	2 cut(s)	176, 401
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	1129
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	4 cut(s)	107, 371, 418, 602
BsnI	GGCC	2 cut(s)	176, 401
Bso31I	GGTCTC	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	8, 133
Bsp13I	TCCGGA	1 cut(s)	1128
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	7 cut(s)	118, 684, 901, 909, 1006, 1033, 1194
Bsp1720I	GCTNAGC	1 cut(s)	729
BspACI	CCGC	1 cut(s)	708
BspANI	GGCC	2 cut(s)	176, 401
BspCNI	CTCAG	5 cut(s)	49, 160, 598, 721, 898
BspEI	TCCGGA	1 cut(s)	1128
BspLI	GGNNCC	4 cut(s)	7, 54, 165, 797
BspPI	GGATC	4 cut(s)	113, 692, 896, 1001
BspTI	CTTAAG	3 cut(s)	446, 629, 977
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	924
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	963
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	7 cut(s)	118, 684, 901, 909, 1006, 1033, 1194
BssNAI	GTATAC	1 cut(s)	809
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	680
Bst1107I	GTATAC	1 cut(s)	809
Bst4CI	ACNGT	2 cut(s)	208, 305
BstACI	GRCGYC	1 cut(s)	69
BstAFI	CTTAAG	3 cut(s)	446, 629, 977
BstAUI	TGTACA	1 cut(s)	600
BstDEI	CTNAG	6 cut(s)	57, 168, 606, 729, 826, 906
BstF5I	GGATG	5 cut(s)	52, 256, 676, 1009, 1014
BstKTI	GATC	7 cut(s)	121, 687, 904, 912, 1009, 1036, 1197
BstMAI	GTCTC	4 cut(s)	107, 371, 418, 602
BstMBI	GATC	7 cut(s)	118, 684, 901, 909, 1006, 1033, 1194
BstMWI	GCNNNNNNNGC	1 cut(s)	749
BstV1I	GCAGC	3 cut(s)	761, 947, 1050
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	3 cut(s)	118, 909, 1033
BstYI	RGATCY	3 cut(s)	118, 909, 1033
BstZ17I	GTATAC	1 cut(s)	809
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	176, 401
BtsCI	GGATG	5 cut(s)	52, 256, 676, 1009, 1014
BtsIMutI	CAGTG	3 cut(s)	310, 603, 743
Cfr13I	GGNCC	1 cut(s)	400
CseI	GACGC	2 cut(s)	419, 722
Csp6I	GTAC	5 cut(s)	40, 540, 601, 823, 1084
CviAII	CATG	2 cut(s)	160, 688
CviQI	GTAC	5 cut(s)	40, 540, 601, 823, 1084
DdeI	CTNAG	6 cut(s)	57, 168, 606, 729, 826, 906
DpnI	GATC	7 cut(s)	120, 686, 903, 911, 1008, 1035, 1196
DpnII	GATC	7 cut(s)	118, 684, 901, 909, 1006, 1033, 1194
DraI	TTTAAA	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	371
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	1092
EcoT14I	CCWWGG	1 cut(s)	680
EcoT22I	ATGCAT	2 cut(s)	256, 723
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	680
FaeI	CATG	2 cut(s)	163, 691
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	2 cut(s)	159, 687
FauI	CCCGC	1 cut(s)	701
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	1194
FblI	GTMKAC	2 cut(s)	72, 808
Fnu4HI	GCNGC	3 cut(s)	750, 936, 1064
FokI	GGATG	5 cut(s)	59, 263, 663, 1001, 1016
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	750, 936, 1064
FspBI	CTAG	3 cut(s)	351, 572, 681
GluI	GCNGC	3 cut(s)	750, 936, 1064
GsaI	CCCAGC	1 cut(s)	795
GsuI	CTGGAG	1 cut(s)	980
HaeIII	GGCC	2 cut(s)	176, 401
HapII	CCGG	1 cut(s)	1129
HgaI	GACGC	2 cut(s)	419, 722
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	163, 691
HincII	GTYRAC	3 cut(s)	73, 270, 566
HindII	GTYRAC	3 cut(s)	73, 270, 566
HindIII	AAGCTT	2 cut(s)	449, 626
HinfI	GANTC	4 cut(s)	33, 592, 851, 1099
HpaII	CCGG	1 cut(s)	1129
HphI	GGTGA	2 cut(s)	274, 488
Hpy166II	GTNNAC	7 cut(s)	73, 270, 566, 580, 603, 809, 1086
Hpy188I	TCNGA	8 cut(s)	10, 46, 357, 387, 856, 930, 1019, 1098
Hpy188III	TCNNGA	5 cut(s)	122, 701, 878, 905, 1129
Hpy8I	GTNNAC	7 cut(s)	73, 270, 566, 580, 603, 809, 1086
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	119, 166, 499, 1114
HpyCH4III	ACNGT	2 cut(s)	208, 305
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	7 cut(s)	254, 373, 456, 656, 721, 749, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	749
HpyF3I	CTNAG	6 cut(s)	57, 168, 606, 729, 826, 906
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	163, 691
Kpn2I	TCCGGA	1 cut(s)	1128
Ksp22I	TGATCA	1 cut(s)	1194
Kzo9I	GATC	7 cut(s)	118, 684, 901, 909, 1006, 1033, 1194
LmnI	GCTCC	4 cut(s)	11, 128, 163, 1143
Lsp1109I	GCAGC	3 cut(s)	761, 947, 1050
LweI	GCATC	3 cut(s)	241, 708, 736
MaeI	CTAG	3 cut(s)	351, 572, 681
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	289, 983
MalI	GATC	7 cut(s)	120, 686, 903, 911, 1008, 1035, 1196
MboI	GATC	7 cut(s)	118, 684, 901, 909, 1006, 1033, 1194
MboII	GAAGA	4 cut(s)	419, 545, 1043, 1054
MflI	RGATCY	3 cut(s)	118, 909, 1033
MhlI	GDGCHC	2 cut(s)	8, 133
MluCI	AATT	8 cut(s)	298, 459, 635, 696, 972, 996, 1092, 1178
MlyI	GAGTC	1 cut(s)	860
MnlI	CCTC	9 cut(s)	16, 43, 52, 225, 413, 568, 684, 795, 984
Mph1103I	ATGCAT	2 cut(s)	256, 723
MroI	TCCGGA	1 cut(s)	1128
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	8 cut(s)	189, 435, 447, 630, 774, 861, 978, 1121
MspCI	CTTAAG	3 cut(s)	446, 629, 977
MspI	CCGG	1 cut(s)	1129
MwoI	GCNNNNNNNGC	1 cut(s)	749
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	7 cut(s)	118, 684, 901, 909, 1006, 1033, 1194
NlaIII	CATG	2 cut(s)	163, 691
NlaIV	GGNNCC	4 cut(s)	7, 54, 165, 797
NmeAIII	GCCGAG	1 cut(s)	202
NsiI	ATGCAT	2 cut(s)	256, 723
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	33, 592, 1099
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	3 cut(s)	751, 937, 1065
PleI	GAGTC	1 cut(s)	859
PpsI	GAGTC	1 cut(s)	859
PspFI	CCCAGC	1 cut(s)	791
PspN4I	GGNNCC	4 cut(s)	7, 54, 165, 797
PspPI	GGNCC	1 cut(s)	400
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
PsuI	RGATCY	3 cut(s)	118, 909, 1033
RsaI	GTAC	5 cut(s)	41, 541, 602, 824, 1085
RsaNI	GTAC	5 cut(s)	40, 540, 601, 823, 1084
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	8 cut(s)	189, 435, 447, 630, 774, 861, 978, 1121
SatI	GCNGC	3 cut(s)	750, 936, 1064
Sau3AI	GATC	7 cut(s)	118, 684, 901, 909, 1006, 1033, 1194
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	2 cut(s)	41, 824
SchI	GAGTC	1 cut(s)	860
SduI	GDGCHC	2 cut(s)	8, 133
SfaNI	GCATC	3 cut(s)	241, 708, 736
SmlI	CTYRAG	3 cut(s)	446, 629, 977
SmoI	CTYRAG	3 cut(s)	446, 629, 977
Sse9I	AATT	8 cut(s)	298, 459, 635, 696, 972, 996, 1092, 1178
SsiI	CCGC	1 cut(s)	708
SspI	AATATT	2 cut(s)	89, 325
SspMI	CTAG	3 cut(s)	351, 572, 681
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	208, 305
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	4 cut(s)	36, 72, 144, 405
TasI	AATT	8 cut(s)	298, 459, 635, 696, 972, 996, 1092, 1178
TatI	WGTACW	3 cut(s)	39, 600, 822
TfiI	GAWTC	3 cut(s)	33, 592, 1099
Tru1I	TTAA	8 cut(s)	189, 435, 447, 630, 774, 861, 978, 1121
Tru9I	TTAA	8 cut(s)	189, 435, 447, 630, 774, 861, 978, 1121
TscAI	CASTG	3 cut(s)	310, 610, 743
TseI	GCWGC	3 cut(s)	749, 935, 1063
TspDTI	ATGAA	4 cut(s)	162, 801, 1003, 1096
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	310, 610, 743
Van91I	CCANNNNNTGG	1 cut(s)	872
Vha464I	CTTAAG	3 cut(s)	446, 629, 977
XapI	RAATTY	3 cut(s)	459, 972, 1092
XmaJI	CCTAGG	1 cut(s)	680
XmiI	GTMKAC	2 cut(s)	72, 808
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	3 cut(s)	351, 572, 681
ZraI	GACGTC	1 cut(s)	70
ZrmI	AGTACT	2 cut(s)	41, 824
Zsp2I	ATGCAT	2 cut(s)	256, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.