Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Forward (+)

17580346 .. 17582077

Gene Structure 1732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCAAAGCAGCAAAGGAAGTTCGATCCAGTCACTTACTGCCCAATTGAAGGACATGGCTGAAAGGCTGCCTGTTGGAGCAGTACGGAATATCAAATCACCCTCTCTAGCTTCTTCCTTGGGTTCTGATCCTTCCAACGAAGTTCCTATTCCTTTGACTGACCGATTGAATGGTCAATTAACATTCCAAGAACCAGACTCCAATGGACCAAACAGTCAGTTGTTTTCTAATGGGTCCAACACCACCAGTAACCGCAATTCAGGTCACAACAAACAAGGACATCTAGATGTGGCAACCAGAAATGGGACCAAAATTAAAGAAAACGAATCTCATCATGAAACTGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATCACACTTACTTCCCTACCGGGAGGCGCCAAGGATCTCAAGCGAGTTCGTTTCAGTCGGAAGCGATTTAGTGAGAAACAAGCAGAACAGTGGTGGGCAGAGAACCGAGCAAGAGTATATGAAATATACAATGTGCGCACGGTAGACAAGTCTAGTGTAGGCATTGGGAGCGAGGACTTGGCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

188

Amino Acids

20.66

Weight (kDa)

6.98

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRX_N	PF13713	9 - 32	3.9e-08	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	39 - 107	2e-23	Unstructured region between BRX_N and BRX domain
BRX	PF08381	113 - 168	3.6e-30	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	213
Acc16I	TGCGCA	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	3 cut(s)	19, 122, 417
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	49, 303
AgsI	TTSAA	2 cut(s)	49, 169
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AlwI	GGATC	3 cut(s)	19, 122, 417
ApeKI	GCWGC	2 cut(s)	9, 67
AspLEI	GCGC	2 cut(s)	404, 513
AspS9I	GGNCC	3 cut(s)	206, 234, 306
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	90
AvaII	GGWCC	3 cut(s)	206, 234, 306
BanI	GGYRCC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	21, 54
BciT130I	CCWGG	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	396
BfaI	CTAG	3 cut(s)	107, 284, 528
BfoI	RGCGCY	1 cut(s)	405
BisI	GCNGC	2 cut(s)	10, 68
BlsI	GCNGC	2 cut(s)	11, 69
Bme1390I	CCNGG	2 cut(s)	366, 396
Bme18I	GGWCC	3 cut(s)	206, 234, 306
BmgT120I	GGNCC	3 cut(s)	206, 234, 306
BmiI	GGNNCC	3 cut(s)	235, 307, 403
BmrFI	CCNGG	2 cut(s)	366, 396
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	117, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 303
Bse1I	ACTGG	2 cut(s)	28, 246
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	117, 405
BseLI	CCNNNNNNNGG	2 cut(s)	49, 303
BseNI	ACTGG	2 cut(s)	28, 246
BseXI	GCAGC	2 cut(s)	21, 54
BshNI	GGYRCC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	49, 303
BsmFI	GGGAC	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	24, 127, 409
BspACI	CCGC	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	235, 307, 403
BspPI	GGATC	3 cut(s)	19, 122, 417
BspT107I	GGYRCC	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	28, 246
BssECI	CCNNGG	2 cut(s)	117, 405
BssMI	GATC	3 cut(s)	24, 127, 409
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	117, 405
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	3 cut(s)	215, 465, 517
BstACI	GRCGYC	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	404, 513
BstKTI	GATC	3 cut(s)	27, 130, 412
BstMBI	GATC	3 cut(s)	24, 127, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 543
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	364, 394
BstV1I	GCAGC	2 cut(s)	21, 54
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	470, 559
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	2 cut(s)	404, 513
Cfr13I	GGNCC	3 cut(s)	206, 234, 306
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	2 cut(s)	55, 335
CviJI	RGCY	5 cut(s)	59, 67, 110, 364, 557
CviKI_1	RGCY	5 cut(s)	59, 67, 110, 364, 557
CviQI	GTAC	1 cut(s)	83
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	3 cut(s)	26, 129, 411
DpnII	GATC	3 cut(s)	24, 127, 409
DrdI	GACNNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	117, 405
Eco47I	GGWCC	3 cut(s)	206, 234, 306
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	117, 405
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
ErhI	CCWWGG	2 cut(s)	117, 405
FaeI	CATG	2 cut(s)	58, 338
FaiI	YATR	7 cut(s)	56, 336, 373, 375, 493, 495, 502
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	54, 334
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	2 cut(s)	10, 68
Fsp4HI	GCNGC	2 cut(s)	10, 68
FspAI	RTGCGCAY	1 cut(s)	512
FspBI	CTAG	3 cut(s)	107, 284, 528
FspI	TGCGCA	1 cut(s)	512
GlaI	GCGC	2 cut(s)	403, 512
GluI	GCNGC	2 cut(s)	10, 68
HaeII	RGCGCY	1 cut(s)	405
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	2 cut(s)	404, 513
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	58, 338
Hin6I	GCGC	2 cut(s)	402, 511
HinP1I	GCGC	2 cut(s)	402, 511
HinfI	GANTC	2 cut(s)	197, 326
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	90
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	2 cut(s)	127, 435
Hpy188III	TCNNGA	2 cut(s)	284, 335
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	2 cut(s)	43, 141
HpyCH4III	ACNGT	3 cut(s)	215, 465, 517
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 543
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	58, 338
HspAI	GCGC	2 cut(s)	402, 511
KasI	GGCGCC	1 cut(s)	401
Kzo9I	GATC	3 cut(s)	24, 127, 409
LmnI	GCTCC	2 cut(s)	77, 543
LpnPI	CCDG	9 cut(s)	41, 84, 207, 246, 259, 310, 351, 378, 408
Lsp1109I	GCAGC	2 cut(s)	21, 54
MaeI	CTAG	3 cut(s)	107, 284, 528
MaeIII	GTNAC	3 cut(s)	30, 248, 263
MalI	GATC	3 cut(s)	26, 129, 411
MboI	GATC	3 cut(s)	24, 127, 409
MboII	GAAGA	1 cut(s)	105
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	1 cut(s)	409
MluCI	AATT	4 cut(s)	44, 176, 256, 312
Mly113I	GGCGCC	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	4 cut(s)	55, 159, 261, 413
MnlI	CCTC	3 cut(s)	112, 392, 541
MseI	TTAA	2 cut(s)	179, 315
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	366, 396
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	361, 543
NarI	GGCGCC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	3 cut(s)	24, 127, 409
NlaIII	CATG	2 cut(s)	58, 338
NlaIV	GGNNCC	3 cut(s)	235, 307, 403
NmuCI	GTSAC	2 cut(s)	30, 263
NsbI	TGCGCA	1 cut(s)	512
PagI	TCATGA	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	11, 69
PleI	GAGTC	1 cut(s)	191
PluTI	GGCGCC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	3 cut(s)	235, 307, 403
PspPI	GGNCC	3 cut(s)	206, 234, 306
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	179, 315
SatI	GCNGC	2 cut(s)	10, 68
Sau3AI	GATC	3 cut(s)	24, 127, 409
Sau96I	GGNCC	3 cut(s)	206, 234, 306
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	366, 396
SetI	ASST	2 cut(s)	112, 265
SfoI	GGCGCC	1 cut(s)	403
SinI	GGWCC	3 cut(s)	206, 234, 306
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	4 cut(s)	44, 176, 256, 312
SsiI	CCGC	1 cut(s)	253
SspDI	GGCGCC	1 cut(s)	401
SspMI	CTAG	3 cut(s)	107, 284, 528
StyD4I	CCNGG	2 cut(s)	364, 394
StyI	CCWWGG	2 cut(s)	117, 405
TaaI	ACNGT	3 cut(s)	215, 465, 517
TaqI	TCGA	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	44, 176, 256, 312
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	179, 315
Tru9I	TTAA	2 cut(s)	179, 315
TscAI	CASTG	1 cut(s)	470
TseFI	GTSAC	2 cut(s)	30, 263
TseI	GCWGC	2 cut(s)	9, 67
Tsp45I	GTSAC	2 cut(s)	30, 263
TspDTI	ATGAA	2 cut(s)	351, 510
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	470
VpaK11BI	GGWCC	3 cut(s)	206, 234, 306
XbaI	TCTAGA	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	3 cut(s)	107, 284, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.