Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Reverse (-)

20310670 .. 20314104

Gene Structure 3435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGTGACAGAACAAGAGATATCGCAAGCGTTACAAGCCCTAATCCACGACTCCACTTCCAACCCTAACACCACCACCCCGACCTTCACCACCTTAAACGACGTCGTCCAGCAGCTCCAGTCCCGCCTCGGCGTCGACCTCTCCCACAAGACCGACTTCATTCGGGCTCAGATCCACTACCTCTTCCGATCCCACCCACCCACTACCCATCCTCAACCCCAACCCCAACCCCAACCCCAACCTCAACAAATTCCTCACCCTCAGCACCCTAAAGACCATTTTGCCCTTCACCAACCCCCTAATTACCATCACCCTGCCCCCTCCGCCTTCCAGACCTTCTCCTCTCAGCCCCCGCCTCCACTCCTGAAGCCCGAGCCCGTCTCCGCCGCCGGTCCTCCGCCCGTTTCCGGCTCTAACACGCCCAAGGAGAGCCCTAAGCCTAAAGCTAAGAGAAAAGGTGGCCCAGGAGGTCTAAACAAACTTTGTGGTGTTTCGCCTGAGCTTCAGGCCATTGTTGGCCACCCAACTCTCCCAAGGACTGAGATTGTTAAACAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCCGGTAACAAGAGGAGAATTATTTGCAATGATGAGCTGCGAGTGGTTTTTGAGACAGACTGTACTGACATGTTTAAGATGAACAAGTTGCTTGCTAAACATATTATTCCACTCGAACCATCAAAACCAGTAGTTCCCAAGAAGCCCAAGGTGCCCAAGAATGCTGTGGAGTCTGCAACGAAAAGTACAGAACCGAGTCCTTCCCTGATAATATCTGAAGCACTCGCAAATTTTTTTGGTGTTGGTGTAAGGGAGATGATCCAATCAGAGGTTGTAACGCGTATCTGGGAGTACATAAAGGTCCACCATCTGGAGGATCCTCAAAATCAAATGGCTATACATTGTGATGCAAAGCTTCAAGATCGATCTTTGGTTGTGAAACCATCAATGCATTGGAAATACCTGATATTTTGGAACGTCATCACATATTCAGGAGATGATAATAGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

348

Amino Acids

38.99

Weight (kDa)

9.21

Isoelectric Point (pI)

66.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	3 - 60	6.3e-08	DEK C terminal domain
SWIB	PF02201	161 - 232	1.6e-27	SWIB/MDM2 domain
SWIB	PF02201	267 - 318	6.5e-15	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	742
AccB7I	CCANNNNNTGG	1 cut(s)	901
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	871
AciI	CCGC	6 cut(s)	124, 324, 353, 384, 387, 398
AclWI	GGATC	6 cut(s)	166, 183, 584, 844, 902, 915
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	2 cut(s)	249, 820
AcuI	CTGAAG	3 cut(s)	386, 488, 828
AcyI	GRCGYC	2 cut(s)	102, 132
AfaI	GTAC	3 cut(s)	655, 778, 884
AfiI	CCNNNNNNNGG	4 cut(s)	407, 859, 901, 904
AflIII	ACRYGT	2 cut(s)	660, 869
AgsI	TTSAA	1 cut(s)	950
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	5 cut(s)	115, 446, 502, 628, 946
AluI	AGCT	5 cut(s)	115, 446, 502, 628, 946
Alw26I	GTCTC	2 cut(s)	385, 638
AlwI	GGATC	6 cut(s)	166, 183, 584, 844, 902, 915
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	3 cut(s)	460, 507, 517
ApeKI	GCWGC	2 cut(s)	112, 628
ApoI	RAATTY	2 cut(s)	249, 820
AspS9I	GGNCC	3 cut(s)	392, 461, 892
AsuC2I	CCSGG	1 cut(s)	594
AsuHPI	GGTGA	5 cut(s)	16, 79, 248, 281, 302
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	392, 892
BaeGI	GKGCMC	1 cut(s)	747
BalI	TGGCCA	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	907
BanI	GGYRCC	1 cut(s)	742
BanII	GRGCYC	3 cut(s)	169, 378, 434
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	124, 615
BccI	CCATC	5 cut(s)	216, 315, 718, 906, 982
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	594
BcoDI	GTCTC	2 cut(s)	385, 638
BisI	GCNGC	3 cut(s)	113, 387, 629
BlsI	GCNGC	3 cut(s)	114, 388, 630
Bme1390I	CCNGG	2 cut(s)	465, 594
Bme18I	GGWCC	2 cut(s)	392, 892
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	3 cut(s)	392, 461, 892
BmiI	GGNNCC	2 cut(s)	744, 909
BmrFI	CCNGG	2 cut(s)	465, 594
BmsI	GCATC	1 cut(s)	928
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	2 cut(s)	101, 923
Bpu10I	CCTNAGC	3 cut(s)	261, 435, 498
BpuMI	CCSGG	1 cut(s)	594
Bsa29I	ATCGAT	1 cut(s)	955
BsaHI	GRCGYC	2 cut(s)	102, 132
BsaJI	CCNNGG	5 cut(s)	127, 423, 463, 533, 738
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 859, 901, 904
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	118, 719
Bse3DI	GCAATG	1 cut(s)	625
BseBI	CCWGG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	955
BseDI	CCNNGG	5 cut(s)	127, 423, 463, 533, 738
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	4 cut(s)	407, 859, 901, 904
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	5 cut(s)	182, 275, 359, 489, 531
BseNI	ACTGG	2 cut(s)	118, 719
BseRI	GAGGAG	2 cut(s)	331, 619
BseSI	GKGCMC	1 cut(s)	747
BseXI	GCAGC	2 cut(s)	124, 615
Bsh1236I	CGCG	1 cut(s)	871
BshFI	GGCC	3 cut(s)	462, 509, 519
BshNI	GGYRCC	1 cut(s)	742
BshVI	ATCGAT	1 cut(s)	955
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	390, 408, 594
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	4 cut(s)	407, 859, 901, 904
BsmAI	GTCTC	2 cut(s)	385, 638
BsmBI	CGTCTC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	3 cut(s)	462, 509, 519
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	4 cut(s)	169, 378, 434, 747
Bsp143I	GATC	7 cut(s)	171, 188, 589, 849, 907, 952, 956
BspACI	CCGC	6 cut(s)	124, 324, 353, 384, 387, 398
BspANI	GGCC	3 cut(s)	462, 509, 519
BspCNI	CTCAG	5 cut(s)	181, 274, 358, 490, 532
BspDI	ATCGAT	1 cut(s)	955
BspFNI	CGCG	1 cut(s)	871
BspLI	GGNNCC	2 cut(s)	744, 909
BspPI	GGATC	6 cut(s)	166, 183, 584, 844, 902, 915
BspT107I	GGYRCC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	625
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	118, 719
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	5 cut(s)	127, 423, 463, 533, 738
BssMI	GATC	7 cut(s)	171, 188, 589, 849, 907, 952, 956
BssNI	GRCGYC	2 cut(s)	102, 132
BssT1I	CCWWGG	3 cut(s)	423, 533, 738
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	558, 653
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	2 cut(s)	102, 132
BstC8I	GCNNGC	2 cut(s)	27, 684
BstDEI	CTNAG	7 cut(s)	168, 261, 345, 435, 447, 498, 540
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	871
BstKTI	GATC	7 cut(s)	174, 191, 592, 852, 910, 955, 959
BstMAI	GTCTC	2 cut(s)	385, 638
BstMBI	GATC	7 cut(s)	171, 188, 589, 849, 907, 952, 956
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 323, 742
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	664
BstSCI	CCNGG	2 cut(s)	463, 592
BstSLI	GKGCMC	1 cut(s)	747
BstUI	CGCG	1 cut(s)	871
BstV1I	GCAGC	2 cut(s)	124, 615
BstX2I	RGATCY	3 cut(s)	171, 589, 907
BstYI	RGATCY	3 cut(s)	171, 589, 907
Bsu15I	ATCGAT	1 cut(s)	955
BsuRI	GGCC	3 cut(s)	462, 509, 519
BsuTUI	ATCGAT	1 cut(s)	955
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	27, 684
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	3 cut(s)	392, 461, 892
ClaI	ATCGAT	1 cut(s)	955
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	3 cut(s)	654, 777, 883
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	1 cut(s)	661
CviQI	GTAC	3 cut(s)	654, 777, 883
DdeI	CTNAG	7 cut(s)	168, 261, 345, 435, 447, 498, 540
DpnI	GATC	7 cut(s)	173, 190, 591, 851, 909, 954, 958
DpnII	GATC	7 cut(s)	171, 188, 589, 849, 907, 952, 956
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	3 cut(s)	313, 373, 387
Eco130I	CCWWGG	3 cut(s)	423, 533, 738
Eco24I	GRGCYC	3 cut(s)	169, 378, 434
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	2 cut(s)	392, 892
Eco57I	CTGAAG	3 cut(s)	386, 488, 828
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	3 cut(s)	423, 533, 738
EcoT22I	ATGCAT	1 cut(s)	984
EcoT38I	GRGCYC	3 cut(s)	169, 378, 434
ErhI	CCWWGG	3 cut(s)	423, 533, 738
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	1 cut(s)	664
FaiI	YATR	6 cut(s)	569, 662, 693, 887, 929, 1018
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	660
FauI	CCCGC	2 cut(s)	131, 360
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	113, 387, 629
FokI	GGATG	1 cut(s)	195
FriOI	GRGCYC	3 cut(s)	169, 378, 434
Fsp4HI	GCNGC	3 cut(s)	113, 387, 629
GluI	GCNGC	3 cut(s)	113, 387, 629
GsuI	CTGGAG	2 cut(s)	101, 923
HaeIII	GGCC	3 cut(s)	462, 509, 519
HapII	CCGG	3 cut(s)	390, 408, 594
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	2 cut(s)	102, 132
Hin1II	CATG	1 cut(s)	664
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	3 cut(s)	50, 761, 787
HpaII	CCGG	3 cut(s)	390, 408, 594
HphI	GGTGA	5 cut(s)	16, 79, 248, 281, 302
Hpy166II	GTNNAC	2 cut(s)	136, 895
Hpy188I	TCNGA	4 cut(s)	171, 188, 808, 859
Hpy188III	TCNNGA	5 cut(s)	331, 364, 902, 950, 1023
Hpy8I	GTNNAC	2 cut(s)	136, 895
Hpy99I	CGWCG	3 cut(s)	104, 107, 137
HpyAV	CCTTC	5 cut(s)	94, 296, 337, 346, 801
HpyCH4III	ACNGT	2 cut(s)	558, 653
HpyCH4IV	ACGT	2 cut(s)	102, 1008
HpyCH4V	TGCA	4 cut(s)	618, 767, 941, 982
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 323, 742
HpyF3I	CTNAG	7 cut(s)	168, 261, 345, 435, 447, 498, 540
HpySE526I	ACGT	2 cut(s)	102, 1008
Hsp92I	GRCGYC	2 cut(s)	102, 132
Hsp92II	CATG	1 cut(s)	664
Kzo9I	GATC	7 cut(s)	171, 188, 589, 849, 907, 952, 956
LmnI	GCTCC	1 cut(s)	120
Lsp1109I	GCAGC	2 cut(s)	124, 615
LweI	GCATC	1 cut(s)	928
MaeII	ACGT	2 cut(s)	102, 1008
MaeIII	GTNAC	4 cut(s)	4, 30, 596, 865
MalI	GATC	7 cut(s)	173, 190, 591, 851, 909, 954, 958
MboI	GATC	7 cut(s)	171, 188, 589, 849, 907, 952, 956
MboII	GAAGA	2 cut(s)	175, 586
MflI	RGATCY	3 cut(s)	171, 589, 907
MhlI	GDGCHC	4 cut(s)	169, 378, 434, 747
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	4 cut(s)	249, 301, 609, 820
MluI	ACGCGT	1 cut(s)	869
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	3 cut(s)	44, 770, 796
MmeI	TCCRAC	1 cut(s)	84
Mox20I	TGGCCA	1 cut(s)	519
Mph1103I	ATGCAT	1 cut(s)	984
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	4 cut(s)	95, 549, 666, 1042
MslI	CAYNNNNRTG	1 cut(s)	936
Msp20I	TGGCCA	1 cut(s)	519
MspI	CCGG	3 cut(s)	390, 408, 594
MspR9I	CCNGG	2 cut(s)	465, 594
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	871
MwoI	GCNNNNNNNGC	3 cut(s)	35, 323, 742
NciI	CCSGG	1 cut(s)	594
NdeII	GATC	7 cut(s)	171, 188, 589, 849, 907, 952, 956
NlaIII	CATG	1 cut(s)	664
NlaIV	GGNNCC	2 cut(s)	744, 909
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	984
NspI	RCATGY	1 cut(s)	664
PciI	ACATGT	1 cut(s)	660
PctI	GAATGC	1 cut(s)	757
PflFI	GACNNNGTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	901
PkrI	GCNGC	3 cut(s)	114, 388, 630
PleI	GAGTC	3 cut(s)	44, 769, 795
PpsI	GAGTC	3 cut(s)	44, 769, 795
PscI	ACATGT	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	744, 909
PspPI	GGNCC	3 cut(s)	392, 461, 892
PsuI	RGATCY	3 cut(s)	171, 589, 907
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	3 cut(s)	655, 778, 884
RsaNI	GTAC	3 cut(s)	654, 777, 883
RseI	CAYNNNNRTG	1 cut(s)	936
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	95, 549, 666, 1042
SatI	GCNGC	3 cut(s)	113, 387, 629
Sau3AI	GATC	7 cut(s)	171, 188, 589, 849, 907, 952, 956
Sau96I	GGNCC	3 cut(s)	392, 461, 892
SchI	GAGTC	3 cut(s)	44, 770, 796
ScrFI	CCNGG	2 cut(s)	465, 594
SduI	GDGCHC	4 cut(s)	169, 378, 434, 747
SfaNI	GCATC	1 cut(s)	928
SinI	GGWCC	2 cut(s)	392, 892
SmiMI	CAYNNNNRTG	1 cut(s)	936
Sse9I	AATT	4 cut(s)	249, 301, 609, 820
SsiI	CCGC	6 cut(s)	124, 324, 353, 384, 387, 398
StyD4I	CCNGG	2 cut(s)	463, 592
StyI	CCWWGG	3 cut(s)	423, 533, 738
TaaI	ACNGT	2 cut(s)	558, 653
TaiI	ACGT	2 cut(s)	105, 1011
TaqI	TCGA	3 cut(s)	135, 705, 955
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	4 cut(s)	249, 301, 609, 820
TatI	WGTACW	3 cut(s)	653, 776, 882
TauI	GCSGC	1 cut(s)	389
Tru1I	TTAA	4 cut(s)	95, 549, 666, 1042
Tru9I	TTAA	4 cut(s)	95, 549, 666, 1042
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	112, 628
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	148, 686
Tth111I	GACNNNGTC	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	901
VpaK11BI	GGWCC	2 cut(s)	392, 892
XapI	RAATTY	2 cut(s)	249, 820
XceI	RCATGY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	2 cut(s)	754, 981
XmiI	GTMKAC	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	103
Zsp2I	ATGCAT	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.