trafficking protein particle complex
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G54440 AT5G54440 AT5G54440 |
| fragaria_vesca | FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 FvH4_3g20750 |
| malus_domestica | MD03G1222200.v1.1 MD11G1239600.v1.1 |
| prunus_persica | Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 Prupe.4G187500_v2.0.a1 |
| pyrus_communis | pycom03g17080 pycom11g21130 |
| rosa_chinensis | RchiOBHm_Chr5g0034971 |
| rosa_laevigata | RLG00000033586 RLG00000033589 |
| rosa_multiflora | Rmu_co8343959.1_g000001 Rmu_sc0000879.1_g000039 Rmu_sc0021290.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00045410 |
| rosa_rugosa | Rorug05G0149100 Rorug05G0149200 Rorug05G0149300 |
| rosa_samantha | Rh5AG242200 Rh5BG241800 Rh5CG273300 Rh5DG250400 |
| rosa_wichuraiana | Rw5G022120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1079, 1191 |
| AatII | GACGTC | 1 cut(s) | 2897 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3779, 3794 |
| AccI | GTMKAC | 2 cut(s) | 1787, 3139 |
| AciI | CCGC | 7 cut(s) | 35, 60, 383, 1234, 1570, 2607, 3755 |
| AclWI | GGATC | 9 cut(s) | 70, 411, 510, 1692, 1845, 2234, 2953, 3065, 3488 |
| AcoI | YGGCCR | 3 cut(s) | 1413, 1567, 3547 |
| AcuI | CTGAAG | 5 cut(s) | 785, 2529, 2937, 3168, 3453 |
| AcyI | GRCGYC | 1 cut(s) | 2894 |
| AfaI | GTAC | 6 cut(s) | 684, 1104, 1657, 2248, 2797, 3118 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 2404, 3779, 3794 |
| AhlI | ACTAGT | 1 cut(s) | 3253 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 758, 790 |
| Alw21I | GWGCWC | 6 cut(s) | 225, 1688, 1960, 2363, 3089, 3866 |
| Alw26I | GTCTC | 3 cut(s) | 1098, 2312, 2962 |
| Alw44I | GTGCAC | 1 cut(s) | 1956 |
| AlwI | GGATC | 9 cut(s) | 70, 411, 510, 1692, 1845, 2234, 2953, 3065, 3488 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1000, 1211 |
| ApaLI | GTGCAC | 1 cut(s) | 1956 |
| ApeKI | GCWGC | 8 cut(s) | 588, 917, 1205, 1727, 1832, 1931, 2597, 2609 |
| AseI | ATTAAT | 1 cut(s) | 2354 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2564 |
| AspLEI | GCGC | 1 cut(s) | 3400 |
| AspS9I | GGNCC | 8 cut(s) | 385, 1359, 1377, 2213, 2504, 2702, 3048, 3827 |
| AvaII | GGWCC | 3 cut(s) | 385, 2702, 3048 |
| AxyI | CCTNAGG | 1 cut(s) | 3539 |
| BaeGI | GKGCMC | 2 cut(s) | 1960, 2172 |
| BalI | TGGCCA | 2 cut(s) | 1415, 3549 |
| BanII | GRGCYC | 3 cut(s) | 1688, 2363, 3866 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 801, 833, 1648, 1680 |
| BauI | CACGAG | 2 cut(s) | 161, 3090 |
| BbsI | GAAGAC | 5 cut(s) | 97, 636, 2517, 3235, 3314 |
| Bbv12I | GWGCWC | 6 cut(s) | 225, 1688, 1960, 2363, 3089, 3866 |
| BbvI | GCAGC | 8 cut(s) | 575, 929, 1217, 1714, 1819, 1943, 2596, 2609 |
| BceAI | ACGGC | 2 cut(s) | 1167, 1603 |
| BciVI | GTATCC | 2 cut(s) | 499, 1058 |
| BclI | TGATCA | 3 cut(s) | 154, 910, 2038 |
| BcoDI | GTCTC | 3 cut(s) | 1098, 2312, 2962 |
| BcuI | ACTAGT | 1 cut(s) | 3253 |
| BfmI | CTRYAG | 3 cut(s) | 1368, 1433, 1788 |
| BfuI | GTATCC | 2 cut(s) | 499, 1058 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1242 |
| BglII | AGATCT | 1 cut(s) | 2480 |
| BisI | GCNGC | 9 cut(s) | 589, 918, 1206, 1570, 1728, 1833, 1932, 2598, 2610 |
| BlsI | GCNGC | 9 cut(s) | 590, 919, 1207, 1571, 1729, 1834, 1933, 2599, 2611 |
| Bme18I | GGWCC | 3 cut(s) | 385, 2702, 3048 |
| BmgT120I | GGNCC | 8 cut(s) | 385, 1359, 1377, 2213, 2504, 2702, 3048, 3827 |
| BmiI | GGNNCC | 3 cut(s) | 335, 2961, 3050 |
| BmrI | ACTGGG | 1 cut(s) | 2463 |
| BmuI | ACTGGG | 1 cut(s) | 2463 |
| BpiI | GAAGAC | 5 cut(s) | 97, 636, 2517, 3235, 3314 |
| BpmI | CTGGAG | 1 cut(s) | 3113 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2346, 3301, 3330 |
| Bsa29I | ATCGAT | 4 cut(s) | 514, 1696, 1849, 2823 |
| BsaAI | YACGTR | 2 cut(s) | 1508, 1655 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2238, 2479, 3725 |
| BsaHI | GRCGYC | 1 cut(s) | 2894 |
| BsaJI | CCNNGG | 7 cut(s) | 492, 901, 1355, 2210, 2403, 2496, 3159 |
| BsaWI | WCCGGW | 1 cut(s) | 3530 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 41, 71 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 2404, 3779, 3794 |
| Bse118I | RCCGGY | 1 cut(s) | 330 |
| Bse1I | ACTGG | 9 cut(s) | 734, 874, 2165, 2458, 2704, 2912, 3217, 3390, 3497 |
| Bse21I | CCTNAGG | 1 cut(s) | 3539 |
| Bse3DI | GCAATG | 3 cut(s) | 920, 1478, 3115 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2238, 2479, 3725 |
| BseCI | ATCGAT | 4 cut(s) | 514, 1696, 1849, 2823 |
| BseDI | CCNNGG | 7 cut(s) | 492, 901, 1355, 2210, 2403, 2496, 3159 |
| BseGI | GGATG | 7 cut(s) | 58, 423, 1201, 2812, 2989, 3000, 3669 |
| BseJI | GATNNNNATC | 3 cut(s) | 2238, 2479, 3725 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 2404, 3779, 3794 |
| BseMI | GCAATG | 3 cut(s) | 920, 1478, 3115 |
| BseMII | CTCAG | 9 cut(s) | 140, 727, 1357, 1395, 1395, 1671, 2645, 3645, 3851 |
| BseNI | ACTGG | 9 cut(s) | 734, 874, 2165, 2458, 2704, 2912, 3217, 3390, 3497 |
| BseRI | GAGGAG | 6 cut(s) | 53, 56, 233, 906, 1537, 3856 |
| BseSI | GKGCMC | 2 cut(s) | 1960, 2172 |
| BseXI | GCAGC | 8 cut(s) | 575, 929, 1217, 1714, 1819, 1943, 2596, 2609 |
| BseYI | CCCAGC | 3 cut(s) | 1541, 3671, 3824 |
| BsgI | GTGCAG | 1 cut(s) | 1727 |
| Bsh1285I | CGRYCG | 1 cut(s) | 98 |
| BshVI | ATCGAT | 4 cut(s) | 514, 1696, 1849, 2823 |
| BsiEI | CGRYCG | 1 cut(s) | 98 |
| BsiHKAI | GWGCWC | 6 cut(s) | 225, 1688, 1960, 2363, 3089, 3866 |
| BsiSI | CCGG | 3 cut(s) | 331, 3531, 3881 |
| BslFI | GGGAC | 3 cut(s) | 1318, 3461, 3753 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 2404, 3779, 3794 |
| BsmAI | GTCTC | 3 cut(s) | 1098, 2312, 2962 |
| BsmFI | GGGAC | 3 cut(s) | 1318, 3461, 3753 |
| BsmI | GAATGC | 3 cut(s) | 2323, 3288, 3876 |
| Bsp1286I | GDGCHC | 7 cut(s) | 225, 1688, 1960, 2172, 2363, 3089, 3866 |
| Bsp1407I | TGTACA | 2 cut(s) | 682, 1102 |
| Bsp19I | CCATGG | 1 cut(s) | 901 |
| BspACI | CCGC | 7 cut(s) | 35, 60, 383, 1234, 1570, 2607, 3755 |
| BspCNI | CTCAG | 9 cut(s) | 139, 726, 1356, 1394, 1396, 1672, 2644, 3646, 3852 |
| BspDI | ATCGAT | 4 cut(s) | 514, 1696, 1849, 2823 |
| BspHI | TCATGA | 3 cut(s) | 805, 1275, 2526 |
| BspLI | GGNNCC | 3 cut(s) | 335, 2961, 3050 |
| BspMAI | CTGCAG | 1 cut(s) | 1372 |
| BspPI | GGATC | 9 cut(s) | 70, 411, 510, 1692, 1845, 2234, 2953, 3065, 3488 |
| BsrDI | GCAATG | 3 cut(s) | 920, 1478, 3115 |
| BsrFI | RCCGGY | 1 cut(s) | 330 |
| BsrGI | TGTACA | 2 cut(s) | 682, 1102 |
| BsrI | ACTGG | 9 cut(s) | 734, 874, 2165, 2458, 2704, 2912, 3217, 3390, 3497 |
| BssAI | RCCGGY | 1 cut(s) | 330 |
| BssECI | CCNNGG | 7 cut(s) | 492, 901, 1355, 2210, 2403, 2496, 3159 |
| BssNI | GRCGYC | 1 cut(s) | 2894 |
| BssSI | CACGAG | 2 cut(s) | 161, 3090 |
| BssT1I | CCWWGG | 3 cut(s) | 492, 901, 2496 |
| Bst2BI | CACGAG | 2 cut(s) | 161, 3090 |
| Bst6I | CTCTTC | 4 cut(s) | 569, 1669, 1788, 3532 |
| BstACI | GRCGYC | 1 cut(s) | 2894 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2167 |
| BstAUI | TGTACA | 2 cut(s) | 682, 1102 |
| BstBAI | YACGTR | 2 cut(s) | 1508, 1655 |
| BstDSI | CCRYGG | 2 cut(s) | 901, 3159 |
| BstEII | GGTNACC | 1 cut(s) | 3163 |
| BstF5I | GGATG | 7 cut(s) | 58, 423, 1201, 2812, 2989, 3000, 3669 |
| BstHHI | GCGC | 1 cut(s) | 3400 |
| BstMAI | GTCTC | 3 cut(s) | 1098, 2312, 2962 |
| BstMCI | CGRYCG | 1 cut(s) | 98 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1013, 1242, 1357, 1736, 1964, 2167, 2606 |
| BstNSI | RCATGY | 3 cut(s) | 1162, 1351, 3692 |
| BstPI | GGTNACC | 1 cut(s) | 3163 |
| BstSFI | CTRYAG | 3 cut(s) | 1368, 1433, 1788 |
| BstSLI | GKGCMC | 2 cut(s) | 1960, 2172 |
| BstV1I | GCAGC | 8 cut(s) | 575, 929, 1217, 1714, 1819, 1943, 2596, 2609 |
| BstV2I | GAAGAC | 5 cut(s) | 97, 636, 2517, 3235, 3314 |
| BstX2I | RGATCY | 5 cut(s) | 62, 403, 2239, 2480, 3070 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 526, 649 |
| BstYI | RGATCY | 5 cut(s) | 62, 403, 2239, 2480, 3070 |
| Bsu15I | ATCGAT | 4 cut(s) | 514, 1696, 1849, 2823 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3539 |
| BsuI | GTATCC | 2 cut(s) | 499, 1058 |
| BsuTUI | ATCGAT | 4 cut(s) | 514, 1696, 1849, 2823 |
| BtgI | CCRYGG | 2 cut(s) | 901, 3159 |
| BtsCI | GGATG | 7 cut(s) | 58, 423, 1201, 2812, 2989, 3000, 3669 |
| BtsI | GCAGTG | 1 cut(s) | 3063 |
| BtsIMutI | CAGTG | 9 cut(s) | 721, 1339, 2172, 2451, 2639, 2932, 2961, 3063, 3397 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1000, 1211 |
| CciI | TCATGA | 3 cut(s) | 805, 1275, 2526 |
| CfoI | GCGC | 1 cut(s) | 3400 |
| Cfr10I | RCCGGY | 1 cut(s) | 330 |
| Cfr13I | GGNCC | 8 cut(s) | 385, 1359, 1377, 2213, 2504, 2702, 3048, 3827 |
| ClaI | ATCGAT | 4 cut(s) | 514, 1696, 1849, 2823 |
| CseI | GACGC | 1 cut(s) | 623 |
| CsiI | ACCWGGT | 2 cut(s) | 2425, 2704 |
| Csp6I | GTAC | 6 cut(s) | 683, 1103, 1656, 2247, 2796, 3117 |
| CviQI | GTAC | 6 cut(s) | 683, 1103, 1656, 2247, 2796, 3117 |
| DraI | TTTAAA | 1 cut(s) | 235 |
| EaeI | YGGCCR | 3 cut(s) | 1413, 1567, 3547 |
| Eam1104I | CTCTTC | 4 cut(s) | 569, 1669, 1788, 3532 |
| EarI | CTCTTC | 4 cut(s) | 569, 1669, 1788, 3532 |
| Ecl136II | GAGCTC | 3 cut(s) | 1686, 2361, 3864 |
| Eco130I | CCWWGG | 3 cut(s) | 492, 901, 2496 |
| Eco147I | AGGCCT | 1 cut(s) | 3484 |
| Eco24I | GRGCYC | 3 cut(s) | 1688, 2363, 3866 |
| Eco47I | GGWCC | 3 cut(s) | 385, 2702, 3048 |
| Eco53kI | GAGCTC | 3 cut(s) | 1686, 2361, 3864 |
| Eco57I | CTGAAG | 5 cut(s) | 785, 2529, 2937, 3168, 3453 |
| Eco81I | CCTNAGG | 1 cut(s) | 3539 |
| Eco91I | GGTNACC | 1 cut(s) | 3163 |
| EcoICRI | GAGCTC | 3 cut(s) | 1686, 2361, 3864 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3048 |
| EcoO65I | GGTNACC | 1 cut(s) | 3163 |
| EcoRI | GAATTC | 3 cut(s) | 145, 296, 1226 |
| EcoT14I | CCWWGG | 3 cut(s) | 492, 901, 2496 |
| EcoT22I | ATGCAT | 2 cut(s) | 1606, 2761 |
| EcoT38I | GRGCYC | 3 cut(s) | 1688, 2363, 3866 |
| ErhI | CCWWGG | 3 cut(s) | 492, 901, 2496 |
| FaqI | GGGAC | 3 cut(s) | 1318, 3461, 3753 |
| FauI | CCCGC | 1 cut(s) | 3748 |
| FauNDI | CATATG | 3 cut(s) | 373, 1942, 2434 |
| FbaI | TGATCA | 3 cut(s) | 154, 910, 2038 |
| FblI | GTMKAC | 2 cut(s) | 1787, 3139 |
| Fnu4HI | GCNGC | 9 cut(s) | 589, 918, 1206, 1570, 1728, 1833, 1932, 2598, 2610 |
| FokI | GGATG | 7 cut(s) | 65, 410, 1208, 2819, 2996, 3007, 3676 |
| FriOI | GRGCYC | 3 cut(s) | 1688, 2363, 3866 |
| Fsp4HI | GCNGC | 9 cut(s) | 589, 918, 1206, 1570, 1728, 1833, 1932, 2598, 2610 |
| GlaI | GCGC | 1 cut(s) | 3399 |
| GluI | GCNGC | 9 cut(s) | 589, 918, 1206, 1570, 1728, 1833, 1932, 2598, 2610 |
| GsaI | CCCAGC | 3 cut(s) | 1545, 3675, 3828 |
| GsuI | CTGGAG | 1 cut(s) | 3113 |
| HapII | CCGG | 3 cut(s) | 331, 3531, 3881 |
| HgaI | GACGC | 1 cut(s) | 623 |
| HhaI | GCGC | 1 cut(s) | 3400 |
| Hin1I | GRCGYC | 1 cut(s) | 2894 |
| Hin6I | GCGC | 1 cut(s) | 3398 |
| HinP1I | GCGC | 1 cut(s) | 3398 |
| HincII | GTYRAC | 2 cut(s) | 898, 1440 |
| HindII | GTYRAC | 2 cut(s) | 898, 1440 |
| HindIII | AAGCTT | 4 cut(s) | 772, 1019, 1081, 2933 |
| HpaII | CCGG | 3 cut(s) | 331, 3531, 3881 |
| Hpy166II | GTNNAC | 7 cut(s) | 683, 719, 898, 1440, 1788, 1958, 3140 |
| Hpy8I | GTNNAC | 7 cut(s) | 683, 719, 898, 1440, 1788, 1958, 3140 |
| Hpy99I | CGWCG | 1 cut(s) | 1624 |
| HpyAV | CCTTC | 8 cut(s) | 72, 760, 874, 1247, 1503, 2554, 3428, 3580 |
| HpyCH4IV | ACGT | 3 cut(s) | 1507, 1654, 2894 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1013, 1242, 1357, 1736, 1964, 2167, 2606 |
| HpySE526I | ACGT | 3 cut(s) | 1507, 1654, 2894 |
| Hsp92I | GRCGYC | 1 cut(s) | 2894 |
| HspAI | GCGC | 1 cut(s) | 3398 |
| Ksp22I | TGATCA | 3 cut(s) | 154, 910, 2038 |
| LmnI | GCTCC | 5 cut(s) | 220, 2158, 2965, 3395, 3869 |
| Lsp1109I | GCAGC | 8 cut(s) | 575, 929, 1217, 1714, 1819, 1943, 2596, 2609 |
| MabI | ACCWGGT | 2 cut(s) | 2425, 2704 |
| MaeII | ACGT | 3 cut(s) | 1507, 1654, 2894 |
| MaeIII | GTNAC | 6 cut(s) | 391, 1503, 1623, 2257, 3163, 3556 |
| MfeI | CAATTG | 2 cut(s) | 1689, 2370 |
| MflI | RGATCY | 5 cut(s) | 62, 403, 2239, 2480, 3070 |
| MhlI | GDGCHC | 7 cut(s) | 225, 1688, 1960, 2172, 2363, 3089, 3866 |
| MlsI | TGGCCA | 2 cut(s) | 1415, 3549 |
| MluNI | TGGCCA | 2 cut(s) | 1415, 3549 |
| MlyI | GAGTC | 2 cut(s) | 962, 1330 |
| MmeI | TCCRAC | 2 cut(s) | 65, 2369 |
| Mox20I | TGGCCA | 2 cut(s) | 1415, 3549 |
| Mph1103I | ATGCAT | 2 cut(s) | 1606, 2761 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2564 |
| MscI | TGGCCA | 2 cut(s) | 1415, 3549 |
| MslI | CAYNNNNRTG | 3 cut(s) | 804, 906, 2738 |
| Msp20I | TGGCCA | 2 cut(s) | 1415, 3549 |
| MspA1I | CMGCKG | 2 cut(s) | 2600, 2609 |
| MspI | CCGG | 3 cut(s) | 331, 3531, 3881 |
| MunI | CAATTG | 2 cut(s) | 1689, 2370 |
| Mva1269I | GAATGC | 3 cut(s) | 2323, 3288, 3876 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1013, 1242, 1357, 1736, 1964, 2167, 2606 |
| NcoI | CCATGG | 1 cut(s) | 901 |
| NdeI | CATATG | 3 cut(s) | 373, 1942, 2434 |
| NlaIV | GGNNCC | 3 cut(s) | 335, 2961, 3050 |
| NmuCI | GTSAC | 2 cut(s) | 391, 3163 |
| NsiI | ATGCAT | 2 cut(s) | 1606, 2761 |
| NspI | RCATGY | 3 cut(s) | 1162, 1351, 3692 |
| PaeI | GCATGC | 1 cut(s) | 1351 |
| PagI | TCATGA | 3 cut(s) | 805, 1275, 2526 |
| PceI | AGGCCT | 1 cut(s) | 3484 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 91, 110 |
| PctI | GAATGC | 3 cut(s) | 2323, 3288, 3876 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2564 |
| PflFI | GACNNNGTC | 1 cut(s) | 2706 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3779, 3794 |
| PfoI | TCCNGGA | 1 cut(s) | 1324 |
| PkrI | GCNGC | 9 cut(s) | 590, 919, 1207, 1571, 1729, 1834, 1933, 2599, 2611 |
| Ple19I | CGATCG | 1 cut(s) | 98 |
| PleI | GAGTC | 2 cut(s) | 962, 1329 |
| PpsI | GAGTC | 2 cut(s) | 962, 1329 |
| Ppu21I | YACGTR | 2 cut(s) | 1508, 1655 |
| PpuMI | RGGWCCY | 1 cut(s) | 3048 |
| PshBI | ATTAAT | 1 cut(s) | 2354 |
| PsiI | TTATAA | 2 cut(s) | 1079, 1191 |
| Psp124BI | GAGCTC | 3 cut(s) | 1688, 2363, 3866 |
| Psp5II | RGGWCCY | 1 cut(s) | 3048 |
| PspEI | GGTNACC | 1 cut(s) | 3163 |
| PspFI | CCCAGC | 3 cut(s) | 1541, 3671, 3824 |
| PspN4I | GGNNCC | 3 cut(s) | 335, 2961, 3050 |
| PspPI | GGNCC | 8 cut(s) | 385, 1359, 1377, 2213, 2504, 2702, 3048, 3827 |
| PspPPI | RGGWCCY | 1 cut(s) | 3048 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1482, 1514 |
| PstI | CTGCAG | 1 cut(s) | 1372 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1000, 1211 |
| PsuI | RGATCY | 5 cut(s) | 62, 403, 2239, 2480, 3070 |
| PsyI | GACNNNGTC | 1 cut(s) | 2706 |
| PvuI | CGATCG | 1 cut(s) | 98 |
| PvuII | CAGCTG | 1 cut(s) | 2600 |
| RsaI | GTAC | 6 cut(s) | 684, 1104, 1657, 2248, 2797, 3118 |
| RsaNI | GTAC | 6 cut(s) | 683, 1103, 1656, 2247, 2796, 3117 |
| RseI | CAYNNNNRTG | 3 cut(s) | 804, 906, 2738 |
| SacI | GAGCTC | 3 cut(s) | 1688, 2363, 3866 |
| SatI | GCNGC | 9 cut(s) | 589, 918, 1206, 1570, 1728, 1833, 1932, 2598, 2610 |
| Sau96I | GGNCC | 8 cut(s) | 385, 1359, 1377, 2213, 2504, 2702, 3048, 3827 |
| SchI | GAGTC | 2 cut(s) | 962, 1330 |
| SduI | GDGCHC | 7 cut(s) | 225, 1688, 1960, 2172, 2363, 3089, 3866 |
| SexAI | ACCWGGT | 2 cut(s) | 2425, 2704 |
| SfcI | CTRYAG | 3 cut(s) | 1368, 1433, 1788 |
| SinI | GGWCC | 3 cut(s) | 385, 2702, 3048 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 804, 906, 2738 |
| SpeI | ACTAGT | 1 cut(s) | 3253 |
| SphI | GCATGC | 1 cut(s) | 1351 |
| SseBI | AGGCCT | 1 cut(s) | 3484 |
| SsiI | CCGC | 7 cut(s) | 35, 60, 383, 1234, 1570, 2607, 3755 |
| SspI | AATATT | 3 cut(s) | 2325, 3361, 3735 |
| SstI | GAGCTC | 3 cut(s) | 1688, 2363, 3866 |
| StuI | AGGCCT | 1 cut(s) | 3484 |
| StyI | CCWWGG | 3 cut(s) | 492, 901, 2496 |
| TaiI | ACGT | 3 cut(s) | 1510, 1657, 2897 |
| TaqI | TCGA | 9 cut(s) | 98, 104, 364, 514, 597, 1696, 1849, 2823, 3803 |
| TaqII | GACCGA | 1 cut(s) | 3247 |
| TatI | WGTACW | 2 cut(s) | 682, 1102 |
| TauI | GCSGC | 1 cut(s) | 1572 |
| TscAI | CASTG | 9 cut(s) | 721, 1339, 2172, 2458, 2639, 2932, 2961, 3063, 3397 |
| TseFI | GTSAC | 2 cut(s) | 391, 3163 |
| TseI | GCWGC | 8 cut(s) | 588, 917, 1205, 1727, 1832, 1931, 2597, 2609 |
| Tsp45I | GTSAC | 2 cut(s) | 391, 3163 |
| TspGWI | ACGGA | 2 cut(s) | 892, 1929 |
| TspRI | CASTG | 9 cut(s) | 721, 1339, 2172, 2458, 2639, 2932, 2961, 3063, 3397 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2706 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3779, 3794 |
| VneI | GTGCAC | 1 cut(s) | 1956 |
| VpaK11BI | GGWCC | 3 cut(s) | 385, 2702, 3048 |
| VspI | ATTAAT | 1 cut(s) | 2354 |
| XbaI | TCTAGA | 1 cut(s) | 3272 |
| XceI | RCATGY | 3 cut(s) | 1162, 1351, 3692 |
| XmiI | GTMKAC | 2 cut(s) | 1787, 3139 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2564 |
| ZraI | GACGTC | 1 cut(s) | 2895 |
| Zsp2I | ATGCAT | 2 cut(s) | 1606, 2761 |