pycom11g22950

NUMOD3 motif (2 copies)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
25981596 .. 25985130
3535 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1311 bp
ATGTTAAAAAATAGGATTGGTGGGCACCAATCCGCTATCGCTCTCAAATCCGCGTTTTGTTTCGAAGCGGGTCTCTCTGGTCTTCCTCCACCCTCCGCCTTATCTTTCCACCTTGAAATGCCGGTCTTCCACCTGAAGTCAATTCTCTCTTGCCTGAGATTGGCTGCTCCGCCATACTCGACTCTCAAGTGTGTTCCACTGTTTGGTTGTGTGGGGGAAGCCACTCACTTGGCACAGAACCCAGAAAATTGGAACTATTATTTGCCTGTTTTGAGGAATCGTTCTCCCTCGGTTGTTCTTGTAAGTTCCTTCCCTAGACTTCATTGTCTGGGAGCCGCGCGCAGCAGTGCTGACATGGCTGAAAATTGTGATATTATGGACATCTGTCATTCTTTACTCGACATAAATACACATGAGAAACAAAGTTTAAGCAAGGAGGTTCCATCAGTTAATGACAGCGACTCTCTTAGCAAGGAAGAAAAGGAGAGACAGAGACGGAAAAAAATAGGACAGGCCAACAAAGGGAGGATACCATGGAATAAAGGCAGGAAACATAGTTCAGAGACTTGTGAGCGAATCAAGCAGAGAACAATAGAAGCATTAAAGGACCCCAAGGTTAGAAAGAAGATGTCTGAGCATCCCCGTCCTCATAGTGCCGAGTCCAAGGCAAAGATGCGTTCTTCACTTAGACGTGTTTGGGGACAGCGTTTGAAGTGGAAACAGTTAAGGGAGAAGATATTTCTTTCATGGGTAGAAAGCATAGCAGAGGAAGCTAAGAAAGGTGGGAGTGGACAGAAAGAGCTCCACTGGGATAGCTATGAGAAAATAAAACTAGAATTACATCTCCAACAGCTTCAGCATGCTGCAGAAAAGAAAAAAGCAAAGGCAAAAGAGAGGGAAAACAAAAGAGCAAAAAAAGCAGAACAAGCTAAAGCAAAAACGGTGGCAAGGCTTGATCACGTGAGGAAAGAAGATGGAGTAATTAATGAAGATGATGAAGAGTTGACAGTTCCTCAAGGGCTGAAACGTAACAAGAGATTAATGAAGCTTGACAGAAAGACTTTAATAGATGGTCAAGTTGCTGCTCAACGGGATATAACCATGTCACATATCTCATCTTTGGAGAAACTGGACCTAGAGCTTGTAAAGAGAGAGAAAATTCGAAAAGGTGTTTCATTCGCAGACCAGATCAGAGCTGCCAAAAACAAAAAAATGGAACTAGCTATGGTAGCCTCATCCTCTATTCGTGCAGTGGACAAGAAACCAGGGAAGAGAAAATATTCGGATTCTTGTACACATTTTTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

49.52

Weight (kDa)

9.86

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 24
AccB7I CCANNNNNTGG 1 cut(s) 203
AccII CGCG 3 cut(s) 53, 338, 340
AciI CCGC 6 cut(s) 33, 51, 68, 96, 170, 336
AcsI RAATTY 1 cut(s) 1158
AcuI CTGAAG 2 cut(s) 155, 839
AcvI CACGTG 1 cut(s) 961
AfaI GTAC 1 cut(s) 1294
AfiI CCNNNNNNNGG 3 cut(s) 160, 203, 522
AflIII ACRYGT 1 cut(s) 691
AgsI TTSAA 2 cut(s) 116, 712
AjiI CACGTC 1 cut(s) 692
AjnI CCWGG 1 cut(s) 1264
AloI GAACNNNNNNTCC 2 cut(s) 541, 573
AluBI AGCT 9 cut(s) 773, 802, 816, 853, 929, 1048, 1141, 1196, 1223
AluI AGCT 9 cut(s) 773, 802, 816, 853, 929, 1048, 1141, 1196, 1223
Alw21I GWGCWC 1 cut(s) 804
Alw26I GTCTC 4 cut(s) 77, 481, 487, 557
AoxI GGCC 1 cut(s) 513
ApeKI GCWGC 5 cut(s) 164, 342, 863, 1082, 1196
ApoI RAATTY 1 cut(s) 1158
AseI ATTAAT 2 cut(s) 984, 1040
Asp700I GAANNNNTTC 1 cut(s) 1279
AspLEI GCGC 2 cut(s) 340, 342
AspS9I GGNCC 2 cut(s) 607, 1132
AsuII TTCGAA 2 cut(s) 63, 1162
AvaII GGWCC 2 cut(s) 607, 1132
BaeGI GKGCMC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 24
BanII GRGCYC 1 cut(s) 804
BbrPI CACGTG 1 cut(s) 961
BbsI GAAGAC 2 cut(s) 74, 118
Bbv12I GWGCWC 1 cut(s) 804
BbvI GCAGC 5 cut(s) 151, 354, 850, 1069, 1183
BccI CCATC 3 cut(s) 451, 968, 1064
BciT130I CCWGG 1 cut(s) 1266
BciVI GTATCC 1 cut(s) 522
BclI TGATCA 1 cut(s) 955
BcoDI GTCTC 4 cut(s) 77, 481, 487, 557
BfaI CTAG 5 cut(s) 315, 833, 1136, 1220, 1309
BfmI CTRYAG 1 cut(s) 864
BfuI GTATCC 1 cut(s) 522
BisI GCNGC 6 cut(s) 165, 336, 343, 864, 1083, 1197
BlsI GCNGC 6 cut(s) 166, 337, 344, 865, 1084, 1198
Bme1390I CCNGG 1 cut(s) 1266
Bme18I GGWCC 2 cut(s) 607, 1132
BmgBI CACGTC 1 cut(s) 692
BmgT120I GGNCC 2 cut(s) 607, 1132
BmiI GGNNCC 4 cut(s) 26, 334, 441, 609
BmrFI CCNGG 1 cut(s) 1266
BmrI ACTGGG 1 cut(s) 817
BmsI GCATC 2 cut(s) 646, 663
BmuI ACTGGG 1 cut(s) 817
BoxI GACNNNNGTC 1 cut(s) 384
BpiI GAAGAC 2 cut(s) 74, 118
Bpu14I TTCGAA 2 cut(s) 63, 1162
BpuEI CTTGAG 2 cut(s) 170, 999
BsaAI YACGTR 1 cut(s) 961
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 5 cut(s) 288, 533, 612, 663, 1265
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 203, 522
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 2 cut(s) 812, 1134
BseBI CCWGG 1 cut(s) 1266
BseDI CCNNGG 5 cut(s) 288, 533, 612, 663, 1265
BseGI GGATG 2 cut(s) 637, 1235
BseLI CCNNNNNNNGG 3 cut(s) 160, 203, 522
BseMII CTCAG 2 cut(s) 146, 624
BseNI ACTGG 2 cut(s) 812, 1134
BsePI GCGCGC 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 5 cut(s) 151, 354, 850, 1069, 1183
BsgI GTGCAG 1 cut(s) 1269
Bsh1236I CGCG 3 cut(s) 53, 338, 340
BshFI GGCC 1 cut(s) 515
BshNI GGYRCC 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 804
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 3 cut(s) 160, 203, 522
BsmAI GTCTC 4 cut(s) 77, 481, 487, 557
BsmBI CGTCTC 1 cut(s) 487
BsmFI GGGAC 1 cut(s) 714
BsnI GGCC 1 cut(s) 515
Bso31I GGTCTC 1 cut(s) 77
Bsp119I TTCGAA 2 cut(s) 63, 1162
Bsp1286I GDGCHC 2 cut(s) 27, 804
Bsp1407I TGTACA 1 cut(s) 1292
Bsp143I GATC 2 cut(s) 955, 1188
Bsp19I CCATGG 1 cut(s) 533
BspACI CCGC 6 cut(s) 33, 51, 68, 96, 170, 336
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 147, 625
BspFNI CGCG 3 cut(s) 53, 338, 340
BspLI GGNNCC 4 cut(s) 26, 334, 441, 609
BspMAI CTGCAG 1 cut(s) 868
BspT104I TTCGAA 2 cut(s) 63, 1162
BspT107I GGYRCC 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 1292
BsrI ACTGG 2 cut(s) 812, 1134
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 5 cut(s) 288, 533, 612, 663, 1265
BssHII GCGCGC 1 cut(s) 338
BssMI GATC 2 cut(s) 955, 1188
BssT1I CCWWGG 3 cut(s) 533, 612, 663
Bst2UI CCWGG 1 cut(s) 1266
Bst4CI ACNGT 4 cut(s) 201, 723, 943, 1009
Bst6I CTCTTC 2 cut(s) 993, 1265
BstAUI TGTACA 1 cut(s) 1292
BstBAI YACGTR 1 cut(s) 961
BstBI TTCGAA 2 cut(s) 63, 1162
BstC8I GCNNGC 2 cut(s) 340, 861
BstDEI CTNAG 5 cut(s) 155, 467, 633, 686, 774
BstDSI CCRYGG 1 cut(s) 533
BstF5I GGATG 2 cut(s) 637, 1235
BstFNI CGCG 3 cut(s) 53, 338, 340
BstHHI GCGC 2 cut(s) 340, 342
BstKTI GATC 2 cut(s) 958, 1191
BstMAI GTCTC 4 cut(s) 77, 481, 487, 557
BstMBI GATC 2 cut(s) 955, 1188
BstMWI GCNNNNNNNGC 6 cut(s) 356, 580, 770, 917, 926, 1229
BstNI CCWGG 1 cut(s) 1266
BstNSI RCATGY 1 cut(s) 863
BstPAI GACNNNNGTC 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 1264
BstSFI CTRYAG 1 cut(s) 864
BstSLI GKGCMC 1 cut(s) 27
BstUI CGCG 3 cut(s) 53, 338, 340
BstV1I GCAGC 5 cut(s) 151, 354, 850, 1069, 1183
BstV2I GAAGAC 2 cut(s) 74, 118
BstXI CCANNNNNNTGG 2 cut(s) 229, 249
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 1 cut(s) 515
BtgI CCRYGG 1 cut(s) 533
BtrI CACGTC 1 cut(s) 692
BtsCI GGATG 2 cut(s) 637, 1235
BtsI GCAGTG 2 cut(s) 352, 1257
BtsIMutI CAGTG 4 cut(s) 197, 352, 805, 1257
Cac8I GCNNGC 2 cut(s) 340, 861
CfoI GCGC 2 cut(s) 340, 342
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 607, 1132
Csp6I GTAC 1 cut(s) 1293
CspCI CAANNNNNGTGG 2 cut(s) 924, 959
CviAII CATG 6 cut(s) 355, 413, 534, 747, 860, 1102
CviQI GTAC 1 cut(s) 1293
DdeI CTNAG 5 cut(s) 155, 467, 633, 686, 774
DpnI GATC 2 cut(s) 957, 1190
DpnII GATC 2 cut(s) 955, 1188
DrdI GACNNNNNNGTC 1 cut(s) 324
DseDI GACNNNNNNGTC 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 993, 1265
EarI CTCTTC 2 cut(s) 993, 1265
EciI GGCGGA 2 cut(s) 85, 159
Ecl136II GAGCTC 1 cut(s) 802
Eco130I CCWWGG 3 cut(s) 533, 612, 663
Eco24I GRGCYC 1 cut(s) 804
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 2 cut(s) 607, 1132
Eco53kI GAGCTC 1 cut(s) 802
Eco57I CTGAAG 2 cut(s) 155, 839
Eco72I CACGTG 1 cut(s) 961
EcoICRI GAGCTC 1 cut(s) 802
EcoO109I RGGNCCY 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 1264
EcoT14I CCWWGG 3 cut(s) 533, 612, 663
EcoT38I GRGCYC 1 cut(s) 804
ErhI CCWWGG 3 cut(s) 533, 612, 663
Esp3I CGTCTC 1 cut(s) 487
FaeI CATG 6 cut(s) 358, 416, 537, 750, 863, 1105
FaqI GGGAC 1 cut(s) 714
FatI CATG 6 cut(s) 354, 412, 533, 746, 859, 1101
FauI CCCGC 1 cut(s) 61
FbaI TGATCA 1 cut(s) 955
Fnu4HI GCNGC 6 cut(s) 165, 336, 343, 864, 1083, 1197
FokI GGATG 2 cut(s) 624, 1222
FriOI GRGCYC 1 cut(s) 804
Fsp4HI GCNGC 6 cut(s) 165, 336, 343, 864, 1083, 1197
FspBI CTAG 5 cut(s) 315, 833, 1136, 1220, 1309
GlaI GCGC 2 cut(s) 339, 341
GluI GCNGC 6 cut(s) 165, 336, 343, 864, 1083, 1197
HaeIII GGCC 1 cut(s) 515
HapII CCGG 1 cut(s) 122
HhaI GCGC 2 cut(s) 340, 342
Hin1II CATG 6 cut(s) 358, 416, 537, 750, 863, 1105
Hin6I GCGC 2 cut(s) 338, 340
HinP1I GCGC 2 cut(s) 338, 340
HincII GTYRAC 1 cut(s) 1005
HindII GTYRAC 1 cut(s) 1005
HindIII AAGCTT 1 cut(s) 1046
HinfI GANTC 6 cut(s) 181, 277, 461, 576, 659, 1286
HpaII CCGG 1 cut(s) 122
Hpy166II GTNNAC 4 cut(s) 791, 1005, 1255, 1295
Hpy188I TCNGA 4 cut(s) 562, 634, 1193, 1285
Hpy8I GTNNAC 4 cut(s) 791, 1005, 1255, 1295
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 4 cut(s) 201, 723, 943, 1009
HpyCH4IV ACGT 3 cut(s) 691, 960, 1027
HpyCH4V TGCA 2 cut(s) 866, 1250
HpyF10VI GCNNNNNNNGC 6 cut(s) 356, 580, 770, 917, 926, 1229
HpyF3I CTNAG 5 cut(s) 155, 467, 633, 686, 774
HpySE526I ACGT 3 cut(s) 691, 960, 1027
Hsp92II CATG 6 cut(s) 358, 416, 537, 750, 863, 1105
HspAI GCGC 2 cut(s) 338, 340
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 2 cut(s) 955, 1188
LmnI GCTCC 3 cut(s) 172, 332, 807
Lsp1109I GCAGC 5 cut(s) 151, 354, 850, 1069, 1183
LweI GCATC 2 cut(s) 646, 663
MaeI CTAG 5 cut(s) 315, 833, 1136, 1220, 1309
MaeII ACGT 3 cut(s) 691, 960, 1027
MaeIII GTNAC 2 cut(s) 1028, 1104
MalI GATC 2 cut(s) 957, 1190
MboI GATC 2 cut(s) 955, 1188
MhlI GDGCHC 2 cut(s) 27, 804
MluCI AATT 6 cut(s) 141, 247, 364, 836, 981, 1158
MlyI GAGTC 3 cut(s) 175, 455, 668
MmeI TCCRAC 1 cut(s) 871
MroXI GAANNNNTTC 1 cut(s) 1279
MseI TTAA 8 cut(s) 5, 428, 450, 602, 725, 984, 1040, 1064
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 1266
MvaI CCWGG 1 cut(s) 1266
MvnI CGCG 3 cut(s) 53, 338, 340
MwoI GCNNNNNNNGC 6 cut(s) 356, 580, 770, 917, 926, 1229
NcoI CCATGG 1 cut(s) 533
NdeII GATC 2 cut(s) 955, 1188
NlaIII CATG 6 cut(s) 358, 416, 537, 750, 863, 1105
NlaIV GGNNCC 4 cut(s) 26, 334, 441, 609
NmeAIII GCCGAG 1 cut(s) 682
NmuCI GTSAC 1 cut(s) 1104
NspI RCATGY 1 cut(s) 863
NspV TTCGAA 2 cut(s) 63, 1162
PaeI GCATGC 1 cut(s) 863
PauI GCGCGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 1279
PfeI GAWTC 3 cut(s) 277, 576, 1286
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 6 cut(s) 166, 337, 344, 865, 1084, 1198
PleI GAGTC 3 cut(s) 175, 455, 667
PmaCI CACGTG 1 cut(s) 961
PmlI CACGTG 1 cut(s) 961
PpsI GAGTC 3 cut(s) 175, 455, 667
Ppu21I YACGTR 1 cut(s) 961
PpuMI RGGWCCY 1 cut(s) 607
PshAI GACNNNNGTC 1 cut(s) 384
PshBI ATTAAT 2 cut(s) 984, 1040
Psp124BI GAGCTC 1 cut(s) 804
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 1264
PspCI CACGTG 1 cut(s) 961
PspGI CCWGG 1 cut(s) 1264
PspN4I GGNNCC 4 cut(s) 26, 334, 441, 609
PspPI GGNCC 2 cut(s) 607, 1132
PspPPI RGGWCCY 1 cut(s) 607
PstI CTGCAG 1 cut(s) 868
PteI GCGCGC 1 cut(s) 338
RsaI GTAC 1 cut(s) 1294
RsaNI GTAC 1 cut(s) 1293
SacI GAGCTC 1 cut(s) 804
SaqAI TTAA 8 cut(s) 5, 428, 450, 602, 725, 984, 1040, 1064
SatI GCNGC 6 cut(s) 165, 336, 343, 864, 1083, 1197
Sau3AI GATC 2 cut(s) 955, 1188
Sau96I GGNCC 2 cut(s) 607, 1132
SchI GAGTC 3 cut(s) 175, 455, 668
ScrFI CCNGG 1 cut(s) 1266
SduI GDGCHC 2 cut(s) 27, 804
SfaNI GCATC 2 cut(s) 646, 663
SfcI CTRYAG 1 cut(s) 864
SfuI TTCGAA 2 cut(s) 63, 1162
SinI GGWCC 2 cut(s) 607, 1132
SmlI CTYRAG 2 cut(s) 185, 1014
SmoI CTYRAG 2 cut(s) 185, 1014
SphI GCATGC 1 cut(s) 863
Sse9I AATT 6 cut(s) 141, 247, 364, 836, 981, 1158
SsiI CCGC 6 cut(s) 33, 51, 68, 96, 170, 336
SspI AATATT 1 cut(s) 1280
SspMI CTAG 5 cut(s) 315, 833, 1136, 1220, 1309
SstI GAGCTC 1 cut(s) 804
StyD4I CCNGG 1 cut(s) 1264
StyI CCWWGG 3 cut(s) 533, 612, 663
TaaI ACNGT 4 cut(s) 201, 723, 943, 1009
TaiI ACGT 3 cut(s) 694, 963, 1030
TaqI TCGA 4 cut(s) 63, 179, 399, 1162
TasI AATT 6 cut(s) 141, 247, 364, 836, 981, 1158
TatI WGTACW 1 cut(s) 1292
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 3 cut(s) 277, 576, 1286
Tru1I TTAA 8 cut(s) 5, 428, 450, 602, 725, 984, 1040, 1064
Tru9I TTAA 8 cut(s) 5, 428, 450, 602, 725, 984, 1040, 1064
TscAI CASTG 4 cut(s) 204, 352, 812, 1257
TseFI GTSAC 1 cut(s) 1104
TseI GCWGC 5 cut(s) 164, 342, 863, 1082, 1196
Tsp45I GTSAC 1 cut(s) 1104
TspDTI ATGAA 6 cut(s) 311, 735, 1002, 1011, 1058, 1164
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 4 cut(s) 204, 352, 812, 1257
Van91I CCANNNNNTGG 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 607, 1132
VspI ATTAAT 2 cut(s) 984, 1040
XapI RAATTY 1 cut(s) 1158
XceI RCATGY 1 cut(s) 863
XmnI GAANNNNTTC 1 cut(s) 1279
XspI CTAG 5 cut(s) 315, 833, 1136, 1220, 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.