Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Forward (+)

26675654 .. 26676022

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAATCTACTACTTCCTAATTTAACTTCAAATTTTCTTAATATGCCTTATATGTGTGAAAGTACATTTGAATCGGTGAAGTTTAATCCAAAGACAGAATTTATATTGCTTTTGTTACTTCCATTTTTTGTAGGCACGACTTCTAAAAAACATGGGAATTTGATGGACCTAGTTGATCCAAGGTTGGAATTAGACTTTAACAAAGAGGAGATAACTGTTGCAATCAATGTGGCTCTCCTTTGTTGCAATGTTACTTCGACAGCTAGGCCTACCATGTCTTCGGTTGTGAGCATGCTCGAAGGAAGGGCTGTTATTCAAGAGTTCATCTCGGATCCAAAAGCCGAGAGTATTGATCGATCGATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

123

Amino Acids

13.71

Weight (kDa)

4.89

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	170, 326, 339
AcsI	RAATTY	3 cut(s)	31, 98, 157
AfaI	GTAC	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	30, 71, 317
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AlwI	GGATC	3 cut(s)	170, 326, 339
AoxI	GGCC	1 cut(s)	266
ApoI	RAATTY	3 cut(s)	31, 98, 157
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	270
BccI	CCATC	1 cut(s)	157
BfaI	CTAG	2 cut(s)	170, 264
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	333
BmsI	GCATC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
Bsa29I	ATCGAT	2 cut(s)	355, 359
BsaJI	CCNNGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	253
BseCI	ATCGAT	2 cut(s)	355, 359
BseDI	CCNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	268
BshVI	ATCGAT	2 cut(s)	355, 359
BsiEI	CGRYCG	1 cut(s)	359
BsnI	GGCC	1 cut(s)	268
Bsp143I	GATC	4 cut(s)	175, 331, 352, 356
BspANI	GGCC	1 cut(s)	268
BspDI	ATCGAT	2 cut(s)	355, 359
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	3 cut(s)	170, 326, 339
BsrDI	GCAATG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	4 cut(s)	175, 331, 352, 356
BssT1I	CCWWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	293
BstKTI	GATC	4 cut(s)	178, 334, 355, 359
BstMBI	GATC	4 cut(s)	175, 331, 352, 356
BstMCI	CGRYCG	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	2 cut(s)	355, 359
BsuRI	GGCC	1 cut(s)	268
BsuTUI	ATCGAT	2 cut(s)	355, 359
Cac8I	GCNNGC	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	166
ClaI	ATCGAT	2 cut(s)	355, 359
Csp6I	GTAC	1 cut(s)	63
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	3 cut(s)	152, 274, 292
CviJI	RGCY	5 cut(s)	233, 263, 268, 308, 341
CviKI_1	RGCY	5 cut(s)	233, 263, 268, 308, 341
CviQI	GTAC	1 cut(s)	63
DpnI	GATC	4 cut(s)	177, 333, 354, 358
DpnII	GATC	4 cut(s)	175, 331, 352, 356
Eco130I	CCWWGG	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	3 cut(s)	155, 277, 295
FaiI	YATR	7 cut(s)	44, 51, 53, 104, 153, 275, 293
FatI	CATG	3 cut(s)	151, 273, 291
FspBI	CTAG	2 cut(s)	170, 264
HaeIII	GGCC	1 cut(s)	268
Hin1II	CATG	3 cut(s)	155, 277, 295
HinfI	GANTC	2 cut(s)	4, 71
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	293, 297
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	3 cut(s)	221, 246, 364
Hsp92II	CATG	3 cut(s)	155, 277, 295
Kzo9I	GATC	4 cut(s)	175, 331, 352, 356
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	2 cut(s)	170, 264
MaeIII	GTNAC	2 cut(s)	114, 250
MalI	GATC	4 cut(s)	177, 333, 354, 358
MboI	GATC	4 cut(s)	175, 331, 352, 356
MboII	GAAGA	1 cut(s)	270
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	5 cut(s)	19, 31, 98, 157, 188
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	1 cut(s)	199
MseI	TTAA	4 cut(s)	23, 39, 84, 198
NdeII	GATC	4 cut(s)	175, 331, 352, 356
NlaIII	CATG	3 cut(s)	155, 277, 295
NlaIV	GGNNCC	1 cut(s)	333
NmeAIII	GCCGAG	1 cut(s)	367
NspI	RCATGY	1 cut(s)	295
PaeI	GCATGC	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	4, 71
Ple19I	CGATCG	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	331
PvuI	CGATCG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	23, 39, 84, 198
Sau3AI	GATC	4 cut(s)	175, 331, 352, 356
Sau96I	GGNCC	1 cut(s)	166
SetI	ASST	3 cut(s)	171, 185, 265
SfaNI	GCATC	1 cut(s)	351
SinI	GGWCC	1 cut(s)	166
SphI	GCATGC	1 cut(s)	295
Sse9I	AATT	5 cut(s)	19, 31, 98, 157, 188
SseBI	AGGCCT	1 cut(s)	268
SspMI	CTAG	2 cut(s)	170, 264
StuI	AGGCCT	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	4 cut(s)	257, 297, 355, 359
TasI	AATT	5 cut(s)	19, 31, 98, 157, 188
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	4, 71
Tru1I	TTAA	4 cut(s)	23, 39, 84, 198
Tru9I	TTAA	4 cut(s)	23, 39, 84, 198
TspDTI	ATGAA	2 cut(s)	17, 313
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	3 cut(s)	31, 98, 157
XceI	RCATGY	1 cut(s)	295
XspI	CTAG	2 cut(s)	170, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.