Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8438829.1

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1568

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8438829.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 827 bp

aaatttagtagagagctattcctcatcagctgataatataagtagagtcgcaacatgcttaaaaagaaattatccatgttctgcttcgggagaaaaacatcattccttacatattaattgtggtggaagggagataaatattggtggggttaagtatcaagctgatacagaacaaaaaggtgcttcattctattactcgtctcagaaccagaactgggccttcagcagtacagggaacttcatggataatgatgttgatgcagatatctacattaaatccaatacatctgcactttccaatgtgcctgttatcgattcagaactgtacacaacagcacgcgcatctgccatatctctgacatattatggactctgtctcctgaatggaaattatactatcaaactccactttgctgagattgtatttactaatgataaatcatttaatagtcttggagagcgtatgttcgatgtgtacatccaggataagcgggttctaaaagacttcaatatagaaaaggaatctggtggtactggtaagcgcattataaagacattcacttcaatggtttcaagtcatacactcaagatccatttttactgggctggaaaaggaactactggcatcccagatagagggttttatggtcctctcatatcagctatatcagtaaatcctaactttgaagttccttcagatgatggcaaaaagaagaaagccataacatcaattggaatatcaactgcagcacttctgcttctgcttttggtcgcaggtattatgtggagaaagggctacataggaggaaagatcgctgcagataaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

275

Amino Acids

30.17

Weight (kDa)

8.86

Isoelectric Point (pI)

23.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	765
AccII	CGCG	1 cut(s)	340
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	1 cut(s)	584
AcsI	RAATTY	1 cut(s)	2
AcuI	CTGAAG	2 cut(s)	206, 679
AfaI	GTAC	4 cut(s)	230, 327, 477, 533
AfiI	CCNNNNNNNGG	2 cut(s)	215, 636
AgsI	TTSAA	4 cut(s)	509, 565, 574, 687
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	4 cut(s)	16, 30, 162, 663
AluI	AGCT	4 cut(s)	16, 30, 162, 663
Alw26I	GTCTC	2 cut(s)	205, 381
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	747, 816
ApoI	RAATTY	1 cut(s)	2
AseI	ATTAAT	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	342, 544
AspS9I	GGNCC	2 cut(s)	217, 648
AvaII	GGWCC	1 cut(s)	648
BbvI	GCAGC	2 cut(s)	759, 803
BccI	CCATC	1 cut(s)	696
BciT130I	CCWGG	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	205, 381
BfmI	CTRYAG	2 cut(s)	745, 817
BfuAI	ACCTGC	1 cut(s)	765
BisI	GCNGC	2 cut(s)	748, 817
BlsI	GCNGC	2 cut(s)	749, 818
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	648
BmgT120I	GGNCC	2 cut(s)	217, 648
BmrFI	CCNGG	1 cut(s)	483
BmrI	ACTGGG	2 cut(s)	224, 611
BmsI	GCATC	3 cut(s)	248, 351, 634
BmuI	ACTGGG	2 cut(s)	224, 611
BpuEI	CTTGAG	1 cut(s)	570
Bsa29I	ATCGAT	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 636
Bse1I	ACTGG	4 cut(s)	219, 539, 606, 626
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	313
BseGI	GGATG	2 cut(s)	478, 625
BseLI	CCNNNNNNNGG	2 cut(s)	215, 636
BseMII	CTCAG	2 cut(s)	216, 406
BseNI	ACTGG	4 cut(s)	219, 539, 606, 626
BseXI	GCAGC	2 cut(s)	759, 803
BsgI	GTGCAG	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	219
BshVI	ATCGAT	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	215, 636
BsmAI	GTCTC	2 cut(s)	205, 381
BsmBI	CGTCTC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	219
Bsp1407I	TGTACA	2 cut(s)	325, 475
Bsp143I	GATC	2 cut(s)	589, 811
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	215, 407
BspDI	ATCGAT	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	340
BspMAI	CTGCAG	2 cut(s)	749, 821
BspMI	ACCTGC	1 cut(s)	765
BspPI	GGATC	1 cut(s)	584
BsrGI	TGTACA	2 cut(s)	325, 475
BsrI	ACTGG	4 cut(s)	219, 539, 606, 626
BssMI	GATC	2 cut(s)	589, 811
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	1 cut(s)	325
BstAUI	TGTACA	2 cut(s)	325, 475
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	202, 415
BstF5I	GGATG	2 cut(s)	478, 625
BstFNI	CGCG	1 cut(s)	340
BstHHI	GCGC	2 cut(s)	342, 544
BstKTI	GATC	2 cut(s)	592, 814
BstMAI	GTCTC	2 cut(s)	205, 381
BstMBI	GATC	2 cut(s)	589, 811
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	2 cut(s)	745, 817
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	759, 803
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
Bsu15I	ATCGAT	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	219
BsuTUI	ATCGAT	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	478, 625
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	1 cut(s)	338
CfoI	GCGC	2 cut(s)	342, 544
Cfr13I	GGNCC	2 cut(s)	217, 648
ClaI	ATCGAT	1 cut(s)	313
Csp6I	GTAC	4 cut(s)	229, 326, 476, 532
CviAII	CATG	3 cut(s)	55, 76, 242
CviJI	RGCY	8 cut(s)	16, 30, 162, 219, 606, 663, 720, 796
CviKI_1	RGCY	8 cut(s)	16, 30, 162, 219, 606, 663, 720, 796
CviQI	GTAC	4 cut(s)	229, 326, 476, 532
DdeI	CTNAG	2 cut(s)	202, 415
DpnI	GATC	2 cut(s)	591, 813
DpnII	GATC	2 cut(s)	589, 811
Eco32I	GATATC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	648
Eco57I	CTGAAG	2 cut(s)	206, 679
EcoRII	CCWGG	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	3 cut(s)	58, 79, 245
FatI	CATG	3 cut(s)	54, 75, 241
FauI	CCCGC	1 cut(s)	484
Fnu4HI	GCNGC	2 cut(s)	748, 817
FokI	GGATG	2 cut(s)	465, 612
Fsp4HI	GCNGC	2 cut(s)	748, 817
GlaI	GCGC	2 cut(s)	341, 543
GluI	GCNGC	2 cut(s)	748, 817
HaeIII	GGCC	1 cut(s)	219
HhaI	GCGC	2 cut(s)	342, 544
Hin1II	CATG	3 cut(s)	58, 79, 245
Hin6I	GCGC	2 cut(s)	340, 542
HinP1I	GCGC	2 cut(s)	340, 542
HinfI	GANTC	4 cut(s)	46, 315, 370, 522
Hpy166II	GTNNAC	2 cut(s)	328, 476
Hpy188I	TCNGA	4 cut(s)	205, 320, 358, 698
Hpy188III	TCNNGA	3 cut(s)	88, 380, 587
Hpy8I	GTNNAC	2 cut(s)	328, 476
HpyAV	CCTTC	3 cut(s)	121, 230, 703
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	4 cut(s)	261, 291, 747, 819
HpyF3I	CTNAG	2 cut(s)	202, 415
Hsp92II	CATG	3 cut(s)	58, 79, 245
HspAI	GCGC	2 cut(s)	340, 542
Kzo9I	GATC	2 cut(s)	589, 811
Lsp1109I	GCAGC	2 cut(s)	759, 803
LweI	GCATC	3 cut(s)	248, 351, 634
MalI	GATC	2 cut(s)	591, 813
MboI	GATC	2 cut(s)	589, 811
MboII	GAAGA	1 cut(s)	725
MfeI	CAATTG	1 cut(s)	730
MflI	RGATCY	1 cut(s)	589
MluCI	AATT	5 cut(s)	2, 68, 116, 389, 730
MlyI	GAGTC	2 cut(s)	55, 364
MnlI	CCTC	4 cut(s)	32, 630, 661, 798
MseI	TTAA	5 cut(s)	60, 115, 151, 274, 445
MslI	CAYNNNNRTG	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	340
NdeII	GATC	2 cut(s)	589, 811
NlaIII	CATG	3 cut(s)	58, 79, 245
NspI	RCATGY	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	315, 522
PflFI	GACNNNGTC	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	749, 818
PleI	GAGTC	2 cut(s)	54, 364
PpsI	GAGTC	2 cut(s)	54, 364
PshBI	ATTAAT	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspPI	GGNCC	2 cut(s)	217, 648
PstI	CTGCAG	2 cut(s)	749, 821
PsuI	RGATCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	30
RsaI	GTAC	4 cut(s)	230, 327, 477, 533
RsaNI	GTAC	4 cut(s)	229, 326, 476, 532
RseI	CAYNNNNRTG	1 cut(s)	564
SaqAI	TTAA	5 cut(s)	60, 115, 151, 274, 445
SatI	GCNGC	2 cut(s)	748, 817
Sau3AI	GATC	2 cut(s)	589, 811
Sau96I	GGNCC	2 cut(s)	217, 648
SchI	GAGTC	2 cut(s)	55, 364
ScrFI	CCNGG	1 cut(s)	483
SetI	ASST	6 cut(s)	18, 32, 164, 182, 665, 779
SfaNI	GCATC	3 cut(s)	248, 351, 634
SfcI	CTRYAG	2 cut(s)	745, 817
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	585
SmoI	CTYRAG	1 cut(s)	585
Sse9I	AATT	5 cut(s)	2, 68, 116, 389, 730
SsiI	CCGC	1 cut(s)	491
SspI	AATATT	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	313, 469
TasI	AATT	5 cut(s)	2, 68, 116, 389, 730
TatI	WGTACW	3 cut(s)	228, 325, 475
TfiI	GAWTC	2 cut(s)	315, 522
Tru1I	TTAA	5 cut(s)	60, 115, 151, 274, 445
Tru9I	TTAA	5 cut(s)	60, 115, 151, 274, 445
TseI	GCWGC	2 cut(s)	747, 816
TspDTI	ATGAA	2 cut(s)	175, 230
Tth111I	GACNNNGTC	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	648
VspI	ATTAAT	1 cut(s)	115
XapI	RAATTY	1 cut(s)	2
XceI	RCATGY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.