Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Reverse (-)

11922679 .. 11924934

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCTTTTGTGTTTACATGTCCAGATTTTCACATTGCCAAATGATACATTAATCTATCCTGCTCATGATTACAAGGGATTCACTGTATGGAACTATCTGATTTCTATTTCTTCCCTACCAAGTCTTGGCAGCTGCTTATGTCACATGTCTTCTTGGAGGCAGGTTAGCACCGTGGGGGAGGAGATGCTCTATAATCCCCGGCTTACAAAAAATAAGGAGGGATTTGAAGAGATCATGAAAAAAGTAGCTAGAGTCGCAACATGCTTAAAAAGAAATTATCCATGTTCTGCTTCGGGAGCAAAACATCATTCCTTACATATTAATTGTGGTGGAAGGGAGATAAATATTGGTGGGGTTAAGTATCAAGTTAATACGGAACAAAAAGGTGCTTCATTCTATTACTCATCTCAGACCCAGAACTGGGCCTTCAGCAGTACAGGGAACTTCATGGATAATGATGTTGATGCAATACGTACTGGTAAGCCCTTGATGCAGACATTCACTTCGATGGTTTCAAGTCATACAATCAAGATCCATTTTTACTGGGCTGGAAAAGGAACTACTGGCATCCCAGATAGAGGATTTTATGGTCCTCTCATATCAGCTATATCAGTAGATCCTAACTTTGAAGTTCCTTCAGATGATGGCAAAAAGAAGAAAGCCATAACATCAATCGGAATATTAACTGCAGCACTTCTGTTTCTGCTTTTGGTTGCAGGTATTATGTGGAGTAGGGGCTGCATAGGAGGAAAGATCGCTGCAGATAAAGGTTTGAAGCATGTTAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

28.99

Weight (kDa)

9.25

Isoelectric Point (pI)

27.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	151, 707
AccB7I	CCANNNNNTGG	1 cut(s)	125
AclWI	GGATC	2 cut(s)	526, 611
AcuI	CTGAAG	2 cut(s)	412, 621
AfaI	GTAC	2 cut(s)	436, 475
AfiI	CCNNNNNNNGG	4 cut(s)	125, 420, 421, 578
AflIII	ACRYGT	2 cut(s)	16, 144
AgsI	TTSAA	4 cut(s)	227, 516, 629, 775
AluBI	AGCT	3 cut(s)	132, 248, 605
AluI	AGCT	3 cut(s)	132, 248, 605
AlwI	GGATC	2 cut(s)	526, 611
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	5 cut(s)	129, 132, 689, 738, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	487, 519
AseI	ATTAAT	2 cut(s)	50, 321
AspS9I	GGNCC	2 cut(s)	423, 590
AsuC2I	CCSGG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	5 cut(s)	119, 141, 701, 725, 745
BccI	CCATC	2 cut(s)	502, 638
BcnI	CCSGG	1 cut(s)	199
BfaI	CTAG	2 cut(s)	249, 790
BfmI	CTRYAG	2 cut(s)	687, 759
BfuAI	ACCTGC	2 cut(s)	151, 707
BisI	GCNGC	5 cut(s)	130, 133, 690, 739, 759
BlsI	GCNGC	5 cut(s)	131, 134, 691, 740, 760
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	590
BmgT120I	GGNCC	2 cut(s)	423, 590
BmrFI	CCNGG	1 cut(s)	199
BmrI	ACTGGG	2 cut(s)	430, 553
BmsI	GCATC	4 cut(s)	174, 454, 480, 576
BmuI	ACTGGG	2 cut(s)	430, 553
BpiI	GAAGAC	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	171, 197
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 420, 421, 578
Bse1I	ACTGG	4 cut(s)	425, 481, 548, 568
Bse3DI	GCAATG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	171, 197
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	4 cut(s)	125, 420, 421, 578
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	4 cut(s)	425, 481, 548, 568
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	5 cut(s)	119, 141, 701, 725, 745
BshFI	GGCC	1 cut(s)	425
BsiSI	CCGG	1 cut(s)	199
BslI	CCNNNNNNNGG	4 cut(s)	125, 420, 421, 578
BsnI	GGCC	1 cut(s)	425
Bsp143I	GATC	4 cut(s)	231, 531, 616, 753
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	1 cut(s)	421
BspHI	TCATGA	2 cut(s)	64, 234
BspMAI	CTGCAG	2 cut(s)	691, 763
BspMI	ACCTGC	2 cut(s)	151, 707
BspPI	GGATC	2 cut(s)	526, 611
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	4 cut(s)	425, 481, 548, 568
BssECI	CCNNGG	2 cut(s)	171, 197
BssMI	GATC	4 cut(s)	231, 531, 616, 753
Bst4CI	ACNGT	2 cut(s)	85, 172
Bst6I	CTCTTC	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	473
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	567
BstKTI	GATC	4 cut(s)	234, 534, 619, 756
BstMBI	GATC	4 cut(s)	231, 531, 616, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 296, 490
BstNSI	RCATGY	4 cut(s)	20, 148, 264, 782
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	2 cut(s)	687, 759
BstSNI	TACGTA	1 cut(s)	473
BstV1I	GCAGC	5 cut(s)	119, 141, 701, 725, 745
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	531, 616
BstYI	RGATCY	2 cut(s)	531, 616
BsuRI	GGCC	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	2 cut(s)	151, 707
CciI	TCATGA	2 cut(s)	64, 234
Cfr13I	GGNCC	2 cut(s)	423, 590
Csp6I	GTAC	2 cut(s)	435, 474
CviAII	CATG	8 cut(s)	17, 65, 145, 235, 261, 282, 448, 779
CviJI	RGCY	9 cut(s)	132, 202, 248, 425, 484, 548, 605, 662, 738
CviKI_1	RGCY	9 cut(s)	132, 202, 248, 425, 484, 548, 605, 662, 738
CviQI	GTAC	2 cut(s)	435, 474
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	4 cut(s)	233, 533, 618, 755
DpnII	GATC	4 cut(s)	231, 531, 616, 753
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco105I	TACGTA	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	590
Eco57I	CTGAAG	2 cut(s)	412, 621
FaeI	CATG	8 cut(s)	20, 68, 148, 238, 264, 285, 451, 782
FatI	CATG	8 cut(s)	16, 64, 144, 234, 260, 281, 447, 778
Fnu4HI	GCNGC	5 cut(s)	130, 133, 690, 739, 759
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	5 cut(s)	130, 133, 690, 739, 759
FspBI	CTAG	2 cut(s)	249, 790
GluI	GCNGC	5 cut(s)	130, 133, 690, 739, 759
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	1 cut(s)	199
Hin1II	CATG	8 cut(s)	20, 68, 148, 238, 264, 285, 451, 782
HinfI	GANTC	2 cut(s)	78, 252
HpaII	CCGG	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	4 cut(s)	99, 411, 640, 677
Hpy188III	TCNNGA	5 cut(s)	22, 65, 235, 294, 529
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	327, 436, 645
HpyCH4III	ACNGT	2 cut(s)	85, 172
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	6 cut(s)	467, 493, 689, 716, 741, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 296, 490
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	8 cut(s)	20, 68, 148, 238, 264, 285, 451, 782
Kzo9I	GATC	4 cut(s)	231, 531, 616, 753
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	5 cut(s)	119, 141, 701, 725, 745
LweI	GCATC	4 cut(s)	174, 454, 480, 576
MaeI	CTAG	2 cut(s)	249, 790
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	4 cut(s)	233, 533, 618, 755
MboI	GATC	4 cut(s)	231, 531, 616, 753
MboII	GAAGA	4 cut(s)	102, 141, 239, 667
MflI	RGATCY	2 cut(s)	531, 616
MluCI	AATT	2 cut(s)	274, 322
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	150, 172, 211, 572, 603, 740
MseI	TTAA	7 cut(s)	50, 266, 321, 357, 369, 683, 783
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	3 cut(s)	254, 296, 490
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	231, 531, 616, 753
NlaIII	CATG	8 cut(s)	20, 68, 148, 238, 264, 285, 451, 782
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	4 cut(s)	20, 148, 264, 782
PagI	TCATGA	2 cut(s)	64, 234
PciI	ACATGT	2 cut(s)	16, 144
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	131, 134, 691, 740, 760
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
Ppu21I	YACGTR	1 cut(s)	473
PscI	ACATGT	2 cut(s)	16, 144
PshBI	ATTAAT	2 cut(s)	50, 321
PspPI	GGNCC	2 cut(s)	423, 590
PstI	CTGCAG	2 cut(s)	691, 763
PsuI	RGATCY	2 cut(s)	531, 616
PvuII	CAGCTG	1 cut(s)	132
RsaI	GTAC	2 cut(s)	436, 475
RsaNI	GTAC	2 cut(s)	435, 474
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	7 cut(s)	50, 266, 321, 357, 369, 683, 783
SatI	GCNGC	5 cut(s)	130, 133, 690, 739, 759
Sau3AI	GATC	4 cut(s)	231, 531, 616, 753
Sau96I	GGNCC	2 cut(s)	423, 590
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	8 cut(s)	134, 165, 250, 388, 475, 607, 721, 772
SfaNI	GCATC	4 cut(s)	174, 454, 480, 576
SfcI	CTRYAG	2 cut(s)	687, 759
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	506
SnaBI	TACGTA	1 cut(s)	473
Sse9I	AATT	2 cut(s)	274, 322
SspI	AATATT	2 cut(s)	346, 681
SspMI	CTAG	2 cut(s)	249, 790
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	85, 172
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	506
TasI	AATT	2 cut(s)	274, 322
TatI	WGTACW	1 cut(s)	434
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	7 cut(s)	50, 266, 321, 357, 369, 683, 783
Tru9I	TTAA	7 cut(s)	50, 266, 321, 357, 369, 683, 783
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	5 cut(s)	129, 132, 689, 738, 758
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	251, 381, 436
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	590
VspI	ATTAAT	2 cut(s)	50, 321
XceI	RCATGY	4 cut(s)	20, 148, 264, 782
XspI	CTAG	2 cut(s)	249, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.