Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Forward (+)

64208884 .. 64215484

Gene Structure 6601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3081 bp

ATGGGAACTGACCATTTTTCATTCCTAAGGTTGCTTCTTGCATATCTCATCTTCAGTTTCACTGCATTTTTCTTCCCTGCAAGTTTTGGACAAGCAGCCACAGCTAAGCTTCAGAGCCAGGAAGTGAATGCATTAAAAGAGATAGCAAAGAAGTTGGGGAAGAAAGACTGGGATTTTGGGAAAGATCCTTGCACAGGAGAAGGGAATTGGAGAGTTTTTGTAGATGGGATGAAAAGCTTTGAGAGCTCTGTAACTTGTGATTGCAGCTTCAACAACAATTCCTCTTGCCACGTAGTCAGCATAGCTTTGAAGGCACAGAATTTAACTGGTACACTGCCACCAGAGTTCTCAAAGCTTCATTACCTCAAAGTATTAGATGTGAGTAGAAACCTCCTTACTGGTTCCATACCTTCTCAATGGGCAACCATGCAGTTGGTGGAACTTGGTCTTATGGGGAACAGATTGTCGGGTCCATTTCCAAAAGTTCTCACCAATATTACCACCCTCAGAAACTTGAGCATAGAAGGAAACCTTTTTTCAGGGCCCATTCCGTTGGAAATTGGAAAGTTGGTCAAGTTAGAAAAGCTCATTTTATCGTCAAATCTATTCACCGGAGAATTGCCACAAGCACTAGCAAGGTTGACCAATTTGCTTGACATGAGGATAACTGACAACAACTTCTCTGGAAAGATACCTGACTTCATTGGAAACTGGACTCAGATTTCAAAATTGCTAATTCAAGGTTGCCCTTTTGAGGGTCCTATACCTTCTAGTATATCAGCCCTAACAGGCTTGATTGATCTGAGGATAACCGATTTAAAAGGTAGAGGGTCTTCTTTCCCACCATTGAGTGAAATGGCTTCCTTGAAAACATTGGTACTGAGGAACTGCTTAATATATGGAGAGATCCCGCATTACATTGGCGATATGAAAAGATTGAAAAACCTTGACCTCAGCTATAATGAGTTGACCGGTGCAGTACCAGTATCGTTTGACAAACTGACAAAAGTTGATTTCATATATTTAACAGCAAATAAGCTTACTGGAACTATACCTGGATGGGTCTTGAAACGAATCAAGACAGTGGATTTTTCTTACAACAACTTCACTTGGGAAAGCTCAAGCTCACTTCCTACTGAATGTGATAGAGGGAGTGTAAATTTAGTAGAGAGCTATTCCTCATCAGCTGATAATATTAGAGTCGCAACATGCTTAAAAAGAAATTATCCATGTTCTGCTTCGGGAGAAAAACATCATTCCTTACATATTAATTGTGGTGGAAGGGAGATAAATATTGGTGGGGTTAAGTATCAAGCTGATACAGAACAAAAAGGTGCTTCATTCTATTACTCGTCTCAGAACCAGAACTGGGCCTTCAGCAGTACAGGGAACTTCATGGATAATGATGTTGATGCAGATATCTACATTAAATCCAATACATCTGCACTTTCCAATGTGCCTGTTATCGATTCAGAACTGTACACAACAGCACGCGCATCTGCCATATCTCTGACATATTATGGACTCTGTCTCCTGAATGGAAATTATACTATCAAACTCCACTTTGCTGAGATTGTATTTACTAATGATAAATCATTTAATAGTCTTGGAGAGCGTATGTTCGATGTGTACATCCAGGATAAGCGGGTTCTAAAAGACTTCAATATAGAAAAGGAATCTGGTGGTACTGGTAAGCGCATTATAAAGACATTCACTTCAATGGTTTCAAGTCATACACTGAAGATCCATTTTTACTGGGCTGGAAAAGGAACTACTGGCATCCCAGATAGAGGGTTTTATGGTCCTCTCATATCAGCTATATCAGTAAATCCTAACTTTGAAGTTCCTTCAGATGATGGCAAAAAGAAGAAAGCCATAACATCAATTGGAATATCAACTGCAGCACTTCTGCTTCTGCTTTTGGTCGCAGGTATTATGTGGAGAAAGGGCTACATAGGAGGAAAGATCGCTGCAGATAAAGAGCTCAGAGAAATGGATTTGCAAACAGGATTTTTTACTTTAAAACAGATAAAAGCTGCGACAAAAAACTTTGATGCAGCAAACAAACTTGGGGAGGGTGGTTTTGGTTCAGTCTACAAGACTAACTCTACTCTGATTTTTTTATTAGGGTCTTTTAGCAGATGGCACAGTAATTGCAGTGAAGCAGCTCTCCTCAAATCAAAGCAAGGAAATCGAGAATTTATAAATGAGATAGGCATGATTTCTGCCTTGCAACATCCAAACCTTGTGAAGCTGTATGGATGTTGTGTTGAAGGAAACCAGATGTTGTTAATTTACGAGTACATGGAGAATAACTGTGTATCACGTGCTCTTTTCGCGAGAGACCCTACTTGCAGATTGAAATTGGACTGGCCTACTAGGAAGAACATTTGCCTAGGTATTGCTAGAGGTTTGTCCTATCTACATGAAGAATCCAGAATAAGAATAGTGCATCGCGATATCAAGACGAGCAATGTGTTGCTTGATAAGAATTTCAATGCTAAAATCTCTGATTTTGGCTTGGCAAAGCTTAATGAGGATGGCAACTCCCACATTAGCACTCGGATTGCTGGAACCATTGGTTATATGGCTCCTGAGTATGCCATGCGTGGCTACTTAACCGCAAAAGCAGATGTTTATAGCTTTGGAGTTGTGGCACTAGAAATTGTTAGCGGAAAGAGCAATACAAACTATAGGCCAAAGGAGGAATTCGTCTACCTTCTTGATTGGGCTTATGTTCTGCAAGAGAGGGGGAGTCTATTGGAGTTGGTTGATCCAGCCTTGGGTTCAGAATATTCGTCAGAGGAGACAATGGTGATGCTAAATGTTGCTCTCTTATGCACCAATGCCTCTCCAACTCTAAGGCCTAAAATGTCTCAAGTTGTGAGCATGCTTGAAGGAAAAACAGAAGTTCAAGACCTTCTTTCTGATCCTGGCTTTTCAGCCGTTAATTCCAAGTACAAGGCCATCAGAAATCACTTCTGGTTACATCCAAGCCGTACTCAAACCATGTCAATCAATGGTCCATGTACCGGTACCTCTGGTTCATATAACGAATCAGAAGAGAGTGGCCATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

1026

Amino Acids

113.54

Weight (kDa)

8.58

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	163 - 270	2.4e-06	Leucine-rich repeat region
LRR_8	PF13855	288 - 347	1.2e-08	Leucine rich repeat
Malectin	PF11721	420 - 607	1.6e-41	Malectin domain
Pkinase	PF00069	686 - 897	3.6e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	687 - 965	1.5e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1703, 2204
Acc36I	ACCTGC	1 cut(s)	1919
Acc65I	GGTACC	1 cut(s)	3035
AccB1I	GGYRCC	1 cut(s)	3035
AccI	GTMKAC	2 cut(s)	2094, 2715
AccII	CGCG	3 cut(s)	1494, 2339, 2457
AciI	CCGC	4 cut(s)	911, 1645, 2622, 2673
AclWI	GGATC	5 cut(s)	179, 901, 1738, 2768, 2924
AcoI	YGGCCR	1 cut(s)	3070
AcsI	RAATTY	5 cut(s)	319, 1159, 2198, 2491, 2708
AcuI	CTGAAG	5 cut(s)	37, 95, 1360, 1760, 1833
AcvI	CACGTG	1 cut(s)	2327
AfiI	CCNNNNNNNGG	7 cut(s)	194, 754, 755, 1369, 1790, 2783, 3032
AgeI	ACCGGT	2 cut(s)	971, 3032
AjnI	CCWGG	4 cut(s)	117, 1054, 1635, 2932
Alw21I	GWGCWC	3 cut(s)	248, 1986, 2332
Alw26I	GTCTC	5 cut(s)	1359, 1535, 2337, 2801, 2880
AlwI	GGATC	5 cut(s)	179, 901, 1738, 2768, 2924
AoxI	GGCC	7 cut(s)	542, 1371, 2372, 2696, 2864, 2964, 3070
ApaI	GGGCCC	1 cut(s)	546
ApeKI	GCWGC	7 cut(s)	95, 264, 1901, 1970, 2036, 2057, 2165
ApoI	RAATTY	5 cut(s)	319, 1159, 2198, 2491, 2708
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AseI	ATTAAT	1 cut(s)	1269
AsiGI	ACCGGT	2 cut(s)	971, 3032
Asp718I	GGTACC	1 cut(s)	3035
AspA2I	CCTAGG	1 cut(s)	2395
AspLEI	GCGC	2 cut(s)	1496, 1698
AspS9I	GGNCC	7 cut(s)	470, 542, 543, 758, 1371, 1802, 3023
AsuHPI	GGTGA	3 cut(s)	481, 601, 2827
AvaII	GGWCC	4 cut(s)	470, 758, 1802, 3023
AvrII	CCTAGG	1 cut(s)	2395
AxyI	CCTNAGG	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	546
BalI	TGGCCA	1 cut(s)	3072
BanI	GGYRCC	1 cut(s)	3035
BanII	GRGCYC	3 cut(s)	248, 546, 1986
BarI	GAAGNNNNNNTAC	2 cut(s)	817, 849
BbrPI	CACGTG	1 cut(s)	2327
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	3 cut(s)	248, 1986, 2332
BbvCI	CCTCAGC	1 cut(s)	953
BbvI	GCAGC	7 cut(s)	107, 276, 1913, 1957, 2023, 2069, 2177
BccI	CCATC	6 cut(s)	218, 1053, 1850, 2136, 2534, 2975
BceAI	ACGGC	2 cut(s)	2930, 2982
BcgI	CGANNNNNNTGC	2 cut(s)	2174, 2208
BciT130I	CCWGG	4 cut(s)	119, 1056, 1637, 2934
BcoDI	GTCTC	5 cut(s)	1359, 1535, 2337, 2801, 2880
BfaI	CTAG	6 cut(s)	632, 771, 2379, 2396, 2406, 2660
BfmI	CTRYAG	3 cut(s)	1899, 1971, 2692
BfuAI	ACCTGC	1 cut(s)	1919
BisI	GCNGC	7 cut(s)	96, 265, 1902, 1971, 2037, 2058, 2166
BlnI	CCTAGG	1 cut(s)	2395
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	7 cut(s)	97, 266, 1903, 1972, 2038, 2059, 2167
Bme1390I	CCNGG	4 cut(s)	119, 1056, 1637, 2934
Bme18I	GGWCC	4 cut(s)	470, 758, 1802, 3023
BmgT120I	GGNCC	7 cut(s)	470, 542, 543, 758, 1371, 1802, 3023
BmiI	GGNNCC	7 cut(s)	403, 471, 544, 759, 2575, 2592, 3037
BmrFI	CCNGG	4 cut(s)	119, 1056, 1637, 2934
BmrI	ACTGGG	3 cut(s)	178, 1378, 1765
BmsI	GCATC	6 cut(s)	1402, 1505, 1788, 2044, 2461, 2808
BmuI	ACTGGG	3 cut(s)	178, 1378, 1765
BpiI	GAAGAC	1 cut(s)	825
Bpu10I	CCTNAGC	1 cut(s)	953
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	3 cut(s)	535, 1105, 2862
Bsa29I	ATCGAT	1 cut(s)	1467
BsaAI	YACGTR	2 cut(s)	292, 2327
BsaI	GGTCTC	1 cut(s)	2337
BsaJI	CCNNGG	2 cut(s)	2395, 2781
BsaWI	WCCGGW	3 cut(s)	611, 971, 3032
BsaXI	ACNNNNNCTCC	2 cut(s)	1515, 1545
Bsc4I	CCNNNNNNNGG	7 cut(s)	194, 754, 755, 1369, 1790, 2783, 3032
Bse118I	RCCGGY	2 cut(s)	971, 3032
Bse21I	CCTNAGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	2479
BseBI	CCWGG	4 cut(s)	119, 1056, 1637, 2934
BseCI	ATCGAT	1 cut(s)	1467
BseDI	CCNNGG	2 cut(s)	2395, 2781
BseGI	GGATG	8 cut(s)	234, 1064, 1632, 1779, 2236, 2267, 2545, 2989
BseLI	CCNNNNNNNGG	7 cut(s)	194, 754, 755, 1369, 1790, 2783, 3032
BseMI	GCAATG	1 cut(s)	2479
BseMII	CTCAG	9 cut(s)	520, 731, 794, 872, 967, 1370, 1560, 1999, 2586
BseRI	GAGGAG	2 cut(s)	2162, 2819
BseSI	GKGCMC	1 cut(s)	546
BseXI	GCAGC	7 cut(s)	107, 276, 1913, 1957, 2023, 2069, 2177
BsgI	GTGCAG	2 cut(s)	996, 1428
Bsh1236I	CGCG	3 cut(s)	1494, 2339, 2457
BshFI	GGCC	7 cut(s)	544, 1373, 2374, 2698, 2866, 2966, 3072
BshNI	GGYRCC	1 cut(s)	3035
BshTI	ACCGGT	2 cut(s)	971, 3032
BshVI	ATCGAT	1 cut(s)	1467
BsiHKAI	GWGCWC	3 cut(s)	248, 1986, 2332
BsiSI	CCGG	3 cut(s)	612, 972, 3033
BslI	CCNNNNNNNGG	7 cut(s)	194, 754, 755, 1369, 1790, 2783, 3032
BsmAI	GTCTC	5 cut(s)	1359, 1535, 2337, 2801, 2880
BsmBI	CGTCTC	1 cut(s)	1359
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	7 cut(s)	544, 1373, 2374, 2698, 2866, 2966, 3072
Bso31I	GGTCTC	1 cut(s)	2337
Bsp120I	GGGCCC	1 cut(s)	542
Bsp1286I	GDGCHC	4 cut(s)	248, 546, 1986, 2332
Bsp1407I	TGTACA	2 cut(s)	1479, 1629
Bsp143I	GATC	7 cut(s)	184, 799, 906, 1743, 1965, 2773, 2929
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp68I	TCGCGA	2 cut(s)	2339, 2457
BspACI	CCGC	4 cut(s)	911, 1645, 2622, 2673
BspANI	GGCC	7 cut(s)	544, 1373, 2374, 2698, 2866, 2966, 3072
BspCNI	CTCAG	9 cut(s)	519, 730, 795, 873, 966, 1369, 1561, 1998, 2587
BspDI	ATCGAT	1 cut(s)	1467
BspFNI	CGCG	3 cut(s)	1494, 2339, 2457
BspLI	GGNNCC	7 cut(s)	403, 471, 544, 759, 2575, 2592, 3037
BspMAI	CTGCAG	2 cut(s)	1903, 1975
BspMI	ACCTGC	1 cut(s)	1919
BspPI	GGATC	5 cut(s)	179, 901, 1738, 2768, 2924
BspT107I	GGYRCC	1 cut(s)	3035
BspTNI	GGTCTC	1 cut(s)	2337
BsrDI	GCAATG	1 cut(s)	2479
BsrFI	RCCGGY	2 cut(s)	971, 3032
BsrGI	TGTACA	2 cut(s)	1479, 1629
BssAI	RCCGGY	2 cut(s)	971, 3032
BssECI	CCNNGG	2 cut(s)	2395, 2781
BssMI	GATC	7 cut(s)	184, 799, 906, 1743, 1965, 2773, 2929
BssT1I	CCWWGG	2 cut(s)	2395, 2781
Bst2UI	CCWGG	4 cut(s)	119, 1056, 1637, 2934
Bst4CI	ACNGT	4 cut(s)	1084, 1479, 2150, 2318
Bst6I	CTCTTC	1 cut(s)	3057
BstAUI	TGTACA	2 cut(s)	1479, 1629
BstBAI	YACGTR	2 cut(s)	292, 2327
BstC8I	GCNNGC	2 cut(s)	1492, 2891
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstF5I	GGATG	8 cut(s)	234, 1064, 1632, 1779, 2236, 2267, 2545, 2989
BstFNI	CGCG	3 cut(s)	1494, 2339, 2457
BstHHI	GCGC	2 cut(s)	1496, 1698
BstKTI	GATC	7 cut(s)	187, 802, 909, 1746, 1968, 2776, 2932
BstMAI	GTCTC	5 cut(s)	1359, 1535, 2337, 2801, 2880
BstMBI	GATC	7 cut(s)	184, 799, 906, 1743, 1965, 2773, 2929
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 243, 311, 2336, 2679
BstNI	CCWGG	4 cut(s)	119, 1056, 1637, 2934
BstNSI	RCATGY	2 cut(s)	1212, 2893
BstSCI	CCNGG	4 cut(s)	117, 1054, 1635, 2932
BstSFI	CTRYAG	3 cut(s)	1899, 1971, 2692
BstSLI	GKGCMC	1 cut(s)	546
BstUI	CGCG	3 cut(s)	1494, 2339, 2457
BstV1I	GCAGC	7 cut(s)	107, 276, 1913, 1957, 2023, 2069, 2177
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	3 cut(s)	184, 906, 1743
BstXI	CCANNNNNNTGG	2 cut(s)	433, 553
BstYI	RGATCY	3 cut(s)	184, 906, 1743
Bsu15I	ATCGAT	1 cut(s)	1467
Bsu36I	CCTNAGG	1 cut(s)	26
BsuRI	GGCC	7 cut(s)	544, 1373, 2374, 2698, 2866, 2966, 3072
BsuTUI	ATCGAT	1 cut(s)	1467
BtgZI	GCGATG	1 cut(s)	2438
BtsCI	GGATG	8 cut(s)	234, 1064, 1632, 1779, 2236, 2267, 2545, 2989
BtsI	GCAGTG	3 cut(s)	60, 332, 2164
BtsIMutI	CAGTG	5 cut(s)	60, 332, 1089, 1736, 2164
BtuMI	TCGCGA	2 cut(s)	2339, 2457
BveI	ACCTGC	1 cut(s)	1919
Cac8I	GCNNGC	2 cut(s)	1492, 2891
CfoI	GCGC	2 cut(s)	1496, 1698
Cfr10I	RCCGGY	2 cut(s)	971, 3032
Cfr13I	GGNCC	7 cut(s)	470, 542, 543, 758, 1371, 1802, 3023
ClaI	ATCGAT	1 cut(s)	1467
CspAI	ACCGGT	2 cut(s)	971, 3032
DpnI	GATC	7 cut(s)	186, 801, 908, 1745, 1967, 2775, 2931
DpnII	GATC	7 cut(s)	184, 799, 906, 1743, 1965, 2773, 2929
DraI	TTTAAA	2 cut(s)	819, 2022
EaeI	YGGCCR	1 cut(s)	3070
Eam1104I	CTCTTC	1 cut(s)	3057
EarI	CTCTTC	1 cut(s)	3057
Ecl136II	GAGCTC	2 cut(s)	246, 1984
Eco130I	CCWWGG	2 cut(s)	2395, 2781
Eco147I	AGGCCT	1 cut(s)	2866
Eco24I	GRGCYC	3 cut(s)	248, 546, 1986
Eco31I	GGTCTC	1 cut(s)	2337
Eco32I	GATATC	2 cut(s)	1420, 2461
Eco47I	GGWCC	4 cut(s)	470, 758, 1802, 3023
Eco53kI	GAGCTC	2 cut(s)	246, 1984
Eco57I	CTGAAG	5 cut(s)	37, 95, 1360, 1760, 1833
Eco72I	CACGTG	1 cut(s)	2327
Eco81I	CCTNAGG	1 cut(s)	26
EcoICRI	GAGCTC	2 cut(s)	246, 1984
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoO109I	RGGNCCY	2 cut(s)	542, 758
EcoRI	GAATTC	1 cut(s)	2708
EcoRII	CCWGG	4 cut(s)	117, 1054, 1635, 2932
EcoRV	GATATC	2 cut(s)	1420, 2461
EcoT14I	CCWWGG	2 cut(s)	2395, 2781
EcoT22I	ATGCAT	1 cut(s)	133
EcoT38I	GRGCYC	3 cut(s)	248, 546, 1986
ErhI	CCWWGG	2 cut(s)	2395, 2781
Esp3I	CGTCTC	1 cut(s)	1359
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 2907, 2939
FauI	CCCGC	2 cut(s)	918, 1638
FblI	GTMKAC	2 cut(s)	2094, 2715
Fnu4HI	GCNGC	7 cut(s)	96, 265, 1902, 1971, 2037, 2058, 2166
FokI	GGATG	8 cut(s)	241, 1071, 1619, 1766, 2223, 2274, 2552, 2976
FriOI	GRGCYC	3 cut(s)	248, 546, 1986
Fsp4HI	GCNGC	7 cut(s)	96, 265, 1902, 1971, 2037, 2058, 2166
FspBI	CTAG	6 cut(s)	632, 771, 2379, 2396, 2406, 2660
GlaI	GCGC	2 cut(s)	1495, 1697
GluI	GCNGC	7 cut(s)	96, 265, 1902, 1971, 2037, 2058, 2166
HaeIII	GGCC	7 cut(s)	544, 1373, 2374, 2698, 2866, 2966, 3072
HapII	CCGG	3 cut(s)	612, 972, 3033
HhaI	GCGC	2 cut(s)	1496, 1698
Hin6I	GCGC	2 cut(s)	1494, 1696
HinP1I	GCGC	2 cut(s)	1494, 1696
HincII	GTYRAC	2 cut(s)	642, 969
HindII	GTYRAC	2 cut(s)	642, 969
HindIII	AAGCTT	5 cut(s)	107, 235, 353, 1037, 2528
HinfI	GANTC	9 cut(s)	715, 1074, 1200, 1469, 1524, 1676, 2432, 2755, 3056
HpaII	CCGG	3 cut(s)	612, 972, 3033
HphI	GGTGA	3 cut(s)	481, 601, 2827
Hpy166II	GTNNAC	7 cut(s)	332, 642, 969, 1482, 1630, 2095, 2716
Hpy8I	GTNNAC	7 cut(s)	332, 642, 969, 1482, 1630, 2095, 2716
HpyCH4III	ACNGT	4 cut(s)	1084, 1479, 2150, 2318
HpyCH4IV	ACGT	2 cut(s)	291, 2326
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 243, 311, 2336, 2679
HpySE526I	ACGT	2 cut(s)	291, 2326
HspAI	GCGC	2 cut(s)	1494, 1696
KpnI	GGTACC	1 cut(s)	3039
Kzo9I	GATC	7 cut(s)	184, 799, 906, 1743, 1965, 2773, 2929
LmnI	GCTCC	1 cut(s)	2596
Lsp1109I	GCAGC	7 cut(s)	107, 276, 1913, 1957, 2023, 2069, 2177
LweI	GCATC	6 cut(s)	1402, 1505, 1788, 2044, 2461, 2808
MaeI	CTAG	6 cut(s)	632, 771, 2379, 2396, 2406, 2660
MaeII	ACGT	2 cut(s)	291, 2326
MaeIII	GTNAC	2 cut(s)	250, 2985
MalI	GATC	7 cut(s)	186, 801, 908, 1745, 1967, 2775, 2931
MboI	GATC	7 cut(s)	184, 799, 906, 1743, 1965, 2773, 2929
MboII	GAAGA	9 cut(s)	43, 64, 172, 825, 1753, 1879, 2395, 2441, 3074
MfeI	CAATTG	1 cut(s)	1884
MflI	RGATCY	3 cut(s)	184, 906, 1743
MhlI	GDGCHC	4 cut(s)	248, 546, 1986, 2332
MlsI	TGGCCA	1 cut(s)	3072
MluNI	TGGCCA	1 cut(s)	3072
MlyI	GAGTC	4 cut(s)	709, 1209, 1518, 2764
MmeI	TCCRAC	2 cut(s)	534, 2879
Mox20I	TGGCCA	1 cut(s)	3072
Mph1103I	ATGCAT	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	3072
MslI	CAYNNNNRTG	1 cut(s)	1718
Msp20I	TGGCCA	1 cut(s)	3072
MspA1I	CMGCKG	1 cut(s)	1187
MspI	CCGG	3 cut(s)	612, 972, 3033
MspR9I	CCNGG	4 cut(s)	119, 1056, 1637, 2934
MunI	CAATTG	1 cut(s)	1884
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	4 cut(s)	119, 1056, 1637, 2934
MvnI	CGCG	3 cut(s)	1494, 2339, 2457
MwoI	GCNNNNNNNGC	5 cut(s)	101, 243, 311, 2336, 2679
NdeII	GATC	7 cut(s)	184, 799, 906, 1743, 1965, 2773, 2929
NlaIV	GGNNCC	7 cut(s)	403, 471, 544, 759, 2575, 2592, 3037
NruI	TCGCGA	2 cut(s)	2339, 2457
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	2 cut(s)	1212, 2893
PaeI	GCATGC	1 cut(s)	2893
PceI	AGGCCT	1 cut(s)	2866
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	5 cut(s)	1074, 1469, 1676, 2432, 3056
PflFI	GACNNNGTC	1 cut(s)	1527
PfoI	TCCNGGA	1 cut(s)	1635
PinAI	ACCGGT	2 cut(s)	971, 3032
PkrI	GCNGC	7 cut(s)	97, 266, 1903, 1972, 2038, 2059, 2167
PleI	GAGTC	4 cut(s)	709, 1208, 1518, 2763
PmaCI	CACGTG	1 cut(s)	2327
PmlI	CACGTG	1 cut(s)	2327
PpsI	GAGTC	4 cut(s)	709, 1208, 1518, 2763
Ppu21I	YACGTR	2 cut(s)	292, 2327
PpuMI	RGGWCCY	1 cut(s)	758
PshBI	ATTAAT	1 cut(s)	1269
PsiI	TTATAA	2 cut(s)	1703, 2204
Psp124BI	GAGCTC	2 cut(s)	248, 1986
Psp5II	RGGWCCY	1 cut(s)	758
Psp6I	CCWGG	4 cut(s)	117, 1054, 1635, 2932
PspCI	CACGTG	1 cut(s)	2327
PspGI	CCWGG	4 cut(s)	117, 1054, 1635, 2932
PspN4I	GGNNCC	7 cut(s)	403, 471, 544, 759, 2575, 2592, 3037
PspOMI	GGGCCC	1 cut(s)	542
PspPI	GGNCC	7 cut(s)	470, 542, 543, 758, 1371, 1802, 3023
PspPPI	RGGWCCY	1 cut(s)	758
PsrI	GAACNNNNNNTAC	2 cut(s)	3028, 3060
PstI	CTGCAG	2 cut(s)	1903, 1975
PsuI	RGATCY	3 cut(s)	184, 906, 1743
PsyI	GACNNNGTC	1 cut(s)	1527
PvuII	CAGCTG	1 cut(s)	1187
RruI	TCGCGA	2 cut(s)	2339, 2457
RseI	CAYNNNNRTG	1 cut(s)	1718
SacI	GAGCTC	2 cut(s)	248, 1986
SatI	GCNGC	7 cut(s)	96, 265, 1902, 1971, 2037, 2058, 2166
Sau3AI	GATC	7 cut(s)	184, 799, 906, 1743, 1965, 2773, 2929
Sau96I	GGNCC	7 cut(s)	470, 542, 543, 758, 1371, 1802, 3023
SchI	GAGTC	4 cut(s)	709, 1209, 1518, 2764
ScrFI	CCNGG	4 cut(s)	119, 1056, 1637, 2934
SduI	GDGCHC	4 cut(s)	248, 546, 1986, 2332
SfaNI	GCATC	6 cut(s)	1402, 1505, 1788, 2044, 2461, 2808
SfcI	CTRYAG	3 cut(s)	1899, 1971, 2692
SinI	GGWCC	4 cut(s)	470, 758, 1802, 3023
SmiMI	CAYNNNNRTG	1 cut(s)	1718
SmlI	CTYRAG	3 cut(s)	514, 1120, 2877
SmoI	CTYRAG	3 cut(s)	514, 1120, 2877
SphI	GCATGC	1 cut(s)	2893
SseBI	AGGCCT	1 cut(s)	2866
SsiI	CCGC	4 cut(s)	911, 1645, 2622, 2673
SspI	AATATT	4 cut(s)	496, 1195, 1294, 2795
SspMI	CTAG	6 cut(s)	632, 771, 2379, 2396, 2406, 2660
SstI	GAGCTC	2 cut(s)	248, 1986
StuI	AGGCCT	1 cut(s)	2866
StyD4I	CCNGG	4 cut(s)	117, 1054, 1635, 2932
StyI	CCWWGG	2 cut(s)	2395, 2781
TaaI	ACNGT	4 cut(s)	1084, 1479, 2150, 2318
TaiI	ACGT	2 cut(s)	294, 2329
TaqI	TCGA	3 cut(s)	1467, 1623, 2194
TatI	WGTACW	5 cut(s)	1382, 1479, 1629, 2301, 2958
TfiI	GAWTC	5 cut(s)	1074, 1469, 1676, 2432, 3056
TscAI	CASTG	5 cut(s)	67, 339, 1089, 1743, 2164
TseI	GCWGC	7 cut(s)	95, 264, 1901, 1970, 2036, 2057, 2165
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	5 cut(s)	67, 339, 1089, 1743, 2164
Tth111I	GACNNNGTC	1 cut(s)	1527
VpaK11BI	GGWCC	4 cut(s)	470, 758, 1802, 3023
VspI	ATTAAT	1 cut(s)	1269
XagI	CCTNNNNNAGG	1 cut(s)	192
XapI	RAATTY	5 cut(s)	319, 1159, 2198, 2491, 2708
XceI	RCATGY	2 cut(s)	1212, 2893
XcmI	CCANNNNNNNNNTGG	2 cut(s)	433, 2584
XmaJI	CCTAGG	1 cut(s)	2395
XmiI	GTMKAC	2 cut(s)	2094, 2715
XspI	CTAG	6 cut(s)	632, 771, 2379, 2396, 2406, 2660
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.