Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Reverse (-)

53623542 .. 53625792

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCTTTTGTGTTTACATGTCCAGATTTTCACATTGCCAAATGATACATTAATCTATCCTGCTCATGATTACAAGGGATTCACTGTATGGAACTATCTGATTTCTATTTCTTCCCTACCAAGTCTTGGCAGCTGCTTATGTCACATGTCTTCTTGGAGGCAGGTTAGCACCGTGGGGGAGGAGATGCTCTATAATCCCCGGCTTACAAAAAATAAGGAGGGATTTGAAGAGATCATGAAAAAACATCATTCCTTACATATTAATTGTGGTGGAAGGGAGATAAATATTGGTGGGGTTAAGTATCAAGTTAATACGGAACAAAAAGGTGCTTCATTCTATTACTCATCTCAGACCCAGAACTGGGCCTTCAGCAGTACAGGGAACTTCATGGATAATGATGTTGATGCAGTACGTACTGGTAAGCCCTTGATGCAGACATTCACTTCGATGGTTTCAAGTCATACAATCAAGATCCATTTTTACTGGGCTGGAAAAGGAACTACTGGCATCCCAGATAGAGGATTTTATGGTCCTCTCATATCAGCTATATCAGTAGATCCTAACTTTGAAGTTCCTTCAGATGATGGCAAAAAGAAGAAAGCCATAACATCAATCGGAATATTAACTGCAGCACTTCTGTTTCTGCTTTTGGTTGCAGGTATTATGTGGAGTAGGGGCTGCATAGGAGGAAAGATCGCTGCAGATAAAGGTTTGAAGCATGTTAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

244

Amino Acids

26.9

Weight (kDa)

9.01

Isoelectric Point (pI)

26.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	151, 647
AccB7I	CCANNNNNTGG	1 cut(s)	125
AclWI	GGATC	2 cut(s)	466, 551
AcuI	CTGAAG	2 cut(s)	352, 561
AfaI	GTAC	3 cut(s)	376, 411, 415
AfiI	CCNNNNNNNGG	4 cut(s)	125, 360, 361, 518
AflIII	ACRYGT	2 cut(s)	16, 144
AgsI	TTSAA	4 cut(s)	227, 456, 569, 715
AluBI	AGCT	2 cut(s)	132, 545
AluI	AGCT	2 cut(s)	132, 545
AlwI	GGATC	2 cut(s)	466, 551
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	5 cut(s)	129, 132, 629, 678, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	427, 459
AseI	ATTAAT	2 cut(s)	50, 261
AspS9I	GGNCC	2 cut(s)	363, 530
AsuC2I	CCSGG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	5 cut(s)	119, 141, 641, 665, 685
BccI	CCATC	2 cut(s)	442, 578
BcnI	CCSGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	730
BfmI	CTRYAG	2 cut(s)	627, 699
BfuAI	ACCTGC	2 cut(s)	151, 647
BisI	GCNGC	5 cut(s)	130, 133, 630, 679, 699
BlsI	GCNGC	5 cut(s)	131, 134, 631, 680, 700
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	363, 530
BmrFI	CCNGG	1 cut(s)	199
BmrI	ACTGGG	2 cut(s)	370, 493
BmsI	GCATC	4 cut(s)	174, 394, 420, 516
BmuI	ACTGGG	2 cut(s)	370, 493
BpiI	GAAGAC	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	171, 197
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 360, 361, 518
Bse1I	ACTGG	4 cut(s)	365, 421, 488, 508
Bse3DI	GCAATG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	171, 197
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	4 cut(s)	125, 360, 361, 518
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	4 cut(s)	365, 421, 488, 508
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	5 cut(s)	119, 141, 641, 665, 685
BshFI	GGCC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	199
BslI	CCNNNNNNNGG	4 cut(s)	125, 360, 361, 518
BsnI	GGCC	1 cut(s)	365
Bsp143I	GATC	4 cut(s)	231, 471, 556, 693
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	2 cut(s)	64, 234
BspMAI	CTGCAG	2 cut(s)	631, 703
BspMI	ACCTGC	2 cut(s)	151, 647
BspPI	GGATC	2 cut(s)	466, 551
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	4 cut(s)	365, 421, 488, 508
BssECI	CCNNGG	2 cut(s)	171, 197
BssMI	GATC	4 cut(s)	231, 471, 556, 693
Bst4CI	ACNGT	2 cut(s)	85, 172
Bst6I	CTCTTC	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	348
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	507
BstKTI	GATC	4 cut(s)	234, 474, 559, 696
BstMBI	GATC	4 cut(s)	231, 471, 556, 693
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNSI	RCATGY	3 cut(s)	20, 148, 722
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	2 cut(s)	627, 699
BstSNI	TACGTA	1 cut(s)	413
BstV1I	GCAGC	5 cut(s)	119, 141, 641, 665, 685
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	471, 556
BstYI	RGATCY	2 cut(s)	471, 556
BsuRI	GGCC	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	2 cut(s)	151, 647
CciI	TCATGA	2 cut(s)	64, 234
Cfr13I	GGNCC	2 cut(s)	363, 530
Csp6I	GTAC	3 cut(s)	375, 410, 414
CviAII	CATG	6 cut(s)	17, 65, 145, 235, 388, 719
CviJI	RGCY	8 cut(s)	132, 202, 365, 424, 488, 545, 602, 678
CviKI_1	RGCY	8 cut(s)	132, 202, 365, 424, 488, 545, 602, 678
CviQI	GTAC	3 cut(s)	375, 410, 414
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	4 cut(s)	233, 473, 558, 695
DpnII	GATC	4 cut(s)	231, 471, 556, 693
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco105I	TACGTA	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	2 cut(s)	352, 561
FaeI	CATG	6 cut(s)	20, 68, 148, 238, 391, 722
FatI	CATG	6 cut(s)	16, 64, 144, 234, 387, 718
Fnu4HI	GCNGC	5 cut(s)	130, 133, 630, 679, 699
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	5 cut(s)	130, 133, 630, 679, 699
FspBI	CTAG	1 cut(s)	730
GluI	GCNGC	5 cut(s)	130, 133, 630, 679, 699
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	1 cut(s)	199
Hin1II	CATG	6 cut(s)	20, 68, 148, 238, 391, 722
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	4 cut(s)	99, 351, 580, 617
Hpy188III	TCNNGA	4 cut(s)	22, 65, 235, 469
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	267, 376, 585
HpyCH4III	ACNGT	2 cut(s)	85, 172
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	6 cut(s)	407, 433, 629, 656, 681, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	6 cut(s)	20, 68, 148, 238, 391, 722
Kzo9I	GATC	4 cut(s)	231, 471, 556, 693
Lsp1109I	GCAGC	5 cut(s)	119, 141, 641, 665, 685
LweI	GCATC	4 cut(s)	174, 394, 420, 516
MaeI	CTAG	1 cut(s)	730
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	4 cut(s)	233, 473, 558, 695
MboI	GATC	4 cut(s)	231, 471, 556, 693
MboII	GAAGA	4 cut(s)	102, 141, 239, 607
MflI	RGATCY	2 cut(s)	471, 556
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	6 cut(s)	150, 172, 211, 512, 543, 680
MseI	TTAA	6 cut(s)	50, 261, 297, 309, 623, 723
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	430
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	231, 471, 556, 693
NlaIII	CATG	6 cut(s)	20, 68, 148, 238, 391, 722
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	3 cut(s)	20, 148, 722
PagI	TCATGA	2 cut(s)	64, 234
PciI	ACATGT	2 cut(s)	16, 144
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	131, 134, 631, 680, 700
Ppu21I	YACGTR	1 cut(s)	413
PscI	ACATGT	2 cut(s)	16, 144
PshBI	ATTAAT	2 cut(s)	50, 261
PspPI	GGNCC	2 cut(s)	363, 530
PstI	CTGCAG	2 cut(s)	631, 703
PsuI	RGATCY	2 cut(s)	471, 556
PvuII	CAGCTG	1 cut(s)	132
RsaI	GTAC	3 cut(s)	376, 411, 415
RsaNI	GTAC	3 cut(s)	375, 410, 414
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	6 cut(s)	50, 261, 297, 309, 623, 723
SatI	GCNGC	5 cut(s)	130, 133, 630, 679, 699
Sau3AI	GATC	4 cut(s)	231, 471, 556, 693
Sau96I	GGNCC	2 cut(s)	363, 530
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	7 cut(s)	134, 165, 328, 415, 547, 661, 712
SfaNI	GCATC	4 cut(s)	174, 394, 420, 516
SfcI	CTRYAG	2 cut(s)	627, 699
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	446
SnaBI	TACGTA	1 cut(s)	413
Sse9I	AATT	1 cut(s)	262
SspI	AATATT	2 cut(s)	286, 621
SspMI	CTAG	1 cut(s)	730
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	85, 172
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	1 cut(s)	446
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	6 cut(s)	50, 261, 297, 309, 623, 723
Tru9I	TTAA	6 cut(s)	50, 261, 297, 309, 623, 723
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	5 cut(s)	129, 132, 629, 678, 698
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	251, 321, 376
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	530
VspI	ATTAAT	2 cut(s)	50, 261
XceI	RCATGY	3 cut(s)	20, 148, 722
XspI	CTAG	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.