Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020041.1

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 395

Gene Structure 395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020041.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

gcttatgttctgcaagagagggggagtctattggagttggttgatccagccttgggttcagaatattcgtcagaggagacaatggtgatgctaaatgttgctctcttatgcaccaatgcctctccaactctaaggcctaaaatgtctcaagttgtgagcatgcttgaaggaaaaacagaagttcaagaccttctttctgatcctggcttttcagccgttaattccaagtacaaggccatcagaagtcacttctggttacatccaagccgtactcaaaccatgtcaatcaatggtccatgtaccggtacctctggttcatataacgaatcagaagagagtggccatctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

116

Amino Acids

12.64

Weight (kDa)

5.05

Isoelectric Point (pI)

57.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	305
AclWI	GGATC	2 cut(s)	38, 194
AcoI	YGGCCR	1 cut(s)	340
AfaI	GTAC	4 cut(s)	230, 271, 301, 307
AfiI	CCNNNNNNNGG	2 cut(s)	53, 302
AgeI	ACCGGT	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	167, 185
AjnI	CCWGG	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	71, 150
AlwI	GGATC	2 cut(s)	38, 194
AoxI	GGCC	3 cut(s)	134, 234, 340
AsiGI	ACCGGT	1 cut(s)	302
Asp718I	GGTACC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	305
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	2 cut(s)	200, 252
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	71, 150
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 302
Bse118I	RCCGGY	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	53, 302
BseRI	GAGGAG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	136, 236, 342
BshNI	GGYRCC	1 cut(s)	305
BshTI	ACCGGT	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	53, 302
BsmAI	GTCTC	2 cut(s)	71, 150
BsnI	GGCC	3 cut(s)	136, 236, 342
Bsp143I	GATC	2 cut(s)	43, 199
BspANI	GGCC	3 cut(s)	136, 236, 342
BspLI	GGNNCC	1 cut(s)	307
BspPI	GGATC	2 cut(s)	38, 194
BspT107I	GGYRCC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	43, 199
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	46, 202
BstMAI	GTCTC	2 cut(s)	71, 150
BstMBI	GATC	2 cut(s)	43, 199
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	136, 236, 342
BtsCI	GGATG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	4 cut(s)	229, 270, 300, 306
CspAI	ACCGGT	1 cut(s)	302
CviAII	CATG	3 cut(s)	160, 280, 297
CviJI	RGCY	7 cut(s)	50, 136, 207, 215, 236, 267, 342
CviKI_1	RGCY	7 cut(s)	50, 136, 207, 215, 236, 267, 342
CviQI	GTAC	4 cut(s)	229, 270, 300, 306
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	45, 201
DpnII	GATC	2 cut(s)	43, 199
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	163, 283, 300
FaiI	YATR	7 cut(s)	6, 109, 161, 281, 298, 319, 321
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	3 cut(s)	159, 279, 296
FokI	GGATG	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	136, 236, 342
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	3 cut(s)	163, 283, 300
HinfI	GANTC	2 cut(s)	25, 326
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	5 cut(s)	61, 73, 199, 242, 331
Hpy188III	TCNNGA	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	161, 200
HpyCH4V	TGCA	2 cut(s)	13, 111
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	163, 283, 300
KpnI	GGTACC	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	43, 199
LpnPI	CCDG	6 cut(s)	60, 189, 216, 238, 297, 316
LweI	GCATC	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	245, 255
MalI	GATC	2 cut(s)	45, 201
MboI	GATC	2 cut(s)	43, 199
MboII	GAAGA	1 cut(s)	344
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	1 cut(s)	220
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	4 cut(s)	12, 67, 130, 319
Mox20I	TGGCCA	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	2 cut(s)	219, 349
Msp20I	TGGCCA	1 cut(s)	342
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
NdeII	GATC	2 cut(s)	43, 199
NlaIII	CATG	3 cut(s)	163, 283, 300
NlaIV	GGNNCC	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	326
PinAI	ACCGGT	1 cut(s)	302
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	293
PsrI	GAACNNNNNNTAC	2 cut(s)	298, 330
RsaI	GTAC	4 cut(s)	230, 271, 301, 307
RsaNI	GTAC	4 cut(s)	229, 270, 300, 306
SaqAI	TTAA	2 cut(s)	219, 349
Sau3AI	GATC	2 cut(s)	43, 199
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	2 cut(s)	192, 311
SfaNI	GCATC	1 cut(s)	78
SinI	GGWCC	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	220
SseBI	AGGCCT	1 cut(s)	136
SspI	AATATT	1 cut(s)	65
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	51
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	219, 349
Tru9I	TTAA	2 cut(s)	219, 349
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	293
XceI	RCATGY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.