Rroxscaffold_2G00097110

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
18393687 .. 18400820
7134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097110.1

Sequence Viewer

Length: 1698 bp
ATGGACAATGATGTTGATGCAGATATCTACATTAAATCCAATACATCTGCACTTTCCAATGTGTCTGTAATCGATTCAGAACTGTACACAACAGCACGCGCATCTGCCATTTCTCTTACATATTATGGACTCTGTCTCCTGAATGGAAATTATACTATCAAACTCCACTTTGCTGAGATTGTATTTACTAATGATAAATCATTTAATAGTCTTGGAGAGCGTATGTTCGATGTGTACATCCAGGATAAGCGAGTTCTAAAAGACTTCAATATAGAAAAGGAAGCTGGTGGTACTGGTAAGCACATTATAAAGACATTCACTTCGATGGTTTCAAGTCATACACTCAAGATCCATTTTTACTGGGCTGGAAAAGGAACTACTGGCATCCCAGATAGAGGATTTTATGGTCCTCTCATATCAGCTATATCAGTAGATCCTAACTTTGAAGTTCCTTCAGATGATGGCAAAAAGAAGAAAGCCATAACATCAATTGGAATATCAACTGCAGCACTTCTGCTTCTGCTTTTGGTTGCAGGTATTATGTGGAGAAAGGGCTACATAGGAGGAAAGACCGCTGCAGATAAAGAGCTCAGAGAAATGGATTTGCAAACAGGATTTTTTACTTTAAAACAGATAAAAGCTGCGACAAAAAACTTTGATGCAGCAAACAAACTTGGGGAGGGTGGTTTTGGTTCAGTCTACAAGGGTCTTTTAGCAGACGGCACAGTAATTGCAGTGAAGCAGCTCTCCTCGAAATCAAAGCAAGGAAATCGAGAATTTATAAATGAGATAGGCATGATTTCTGCCTTGCAACATTCAAACCTTGTGAAGCTGTATGGATGTTGTGTTGAAGGAAACCAGATGTTGTTAATTTACGAGTACATGGAGAATAACTGTGTATCGCGTGCTCTTTTCGCGAGAGACCCTACTTGCAGATTGAAATTGGACTGGCCTACTAGGAAGAACATTTGCCTAGGTATTGCTAGAGGTTTGGCCTATCTACATGAAGAATCCAGAATAAGAATAGTGCATCGTGATATCAAGACGAGCAATGTGTTGCTTGATAAGAATTTCAATGCTAAAATCTCTGATTTTGGCTTGGCAAAGCTTAATGAGGATGGCAACACCCACATTAGCACTCGGATTGCTGGAACCATTGGTTATATGGCTCCTGAGTATGCCATGCGTGGCTACTTAACTGCAAAAGCAGATGTTTATAGCTTTGGAGTTGTGGCACTAGAAATTGTTAGCGGAAAGAGCAATACAAACTATAGGCCAAAGGAGGAATTTGTCTACCTTCTTGATTGGGCTTATGTTCTGCAAGAGAGGGGGAGTCTATTGGAGTTGGTTGATCCAGCCTTGGGTTCAGAGTATTCATCAGAGGAGACAATGGTGATGCTAAATGTTGCTCTATTGTGTACCAATGCCTCACCAACTCTAAGGCCTAAAATGTCCCAAGTTGTGAGCATGCTTGAAGGAAAAACAGAAGTTCAAGACCTTCTTTCTGATCCTGGCTTTTCAGCCGTTAATTCCAAGTACAAGGCCATCAGAAATCACTTCTGGCTACATCCAAGCCGTACTCAAAGCATGTCAATCAATGGTCCATGTACCGATACCTCTGGTTCATATAACGAATCTGAAGAGAGTGGCCATCTTTTAAGAGTGAGTTCAGTTAAAGCTGATGAATACATTGTGTAG

Protein Analysis

565

Amino Acids

62.48

Weight (kDa)

7.57

Isoelectric Point (pI)

25.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 7 - 142 3.5e-36 Malectin domain
Pkinase PF00069 221 - 424 4.9e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 222 - 491 7.7e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 308, 782
Acc36I ACCTGC 1 cut(s) 524
AccI GTMKAC 2 cut(s) 699, 1293
AccII CGCG 3 cut(s) 99, 904, 917
AciI CCGC 2 cut(s) 573, 1251
AclWI GGATC 4 cut(s) 343, 428, 1346, 1502
AcoI YGGCCR 1 cut(s) 1648
AcsI RAATTY 3 cut(s) 776, 1069, 1286
AcuI CTGAAG 2 cut(s) 438, 1659
AfaI GTAC 8 cut(s) 86, 236, 292, 881, 1420, 1538, 1579, 1609
AfiI CCNNNNNNNGG 2 cut(s) 395, 1361
AgsI TTSAA 9 cut(s) 268, 333, 446, 819, 851, 940, 1075, 1475, 1493
AjnI CCWGG 2 cut(s) 240, 1510
AluBI AGCT 9 cut(s) 284, 422, 589, 641, 745, 832, 1108, 1221, 1679
AluI AGCT 9 cut(s) 284, 422, 589, 641, 745, 832, 1108, 1221, 1679
Alw21I GWGCWC 2 cut(s) 591, 910
Alw26I GTCTC 3 cut(s) 140, 915, 1379
AlwI GGATC 4 cut(s) 343, 428, 1346, 1502
AoxI GGCC 6 cut(s) 950, 993, 1274, 1442, 1542, 1648
ApeKI GCWGC 5 cut(s) 506, 575, 641, 662, 742
ApoI RAATTY 3 cut(s) 776, 1069, 1286
ArsI GACNNNNNNTTYG 2 cut(s) 304, 336
AspA2I CCTAGG 1 cut(s) 973
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 407, 1601
AsuHPI GGTGA 2 cut(s) 1405, 1422
AvaII GGWCC 2 cut(s) 407, 1601
AvrII CCTAGG 1 cut(s) 973
BalI TGGCCA 1 cut(s) 1650
BanII GRGCYC 1 cut(s) 591
Bbv12I GWGCWC 2 cut(s) 591, 910
BbvI GCAGC 5 cut(s) 518, 562, 628, 674, 754
BccI CCATC 5 cut(s) 319, 455, 1112, 1553, 1659
BceAI ACGGC 3 cut(s) 736, 1508, 1560
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 2 cut(s) 242, 1512
BcoDI GTCTC 3 cut(s) 140, 915, 1379
BfaI CTAG 4 cut(s) 957, 974, 984, 1238
BfmI CTRYAG 3 cut(s) 504, 576, 1270
BfuAI ACCTGC 1 cut(s) 524
BisI GCNGC 5 cut(s) 507, 576, 642, 663, 743
BlnI CCTAGG 1 cut(s) 973
BlsI GCNGC 5 cut(s) 508, 577, 643, 664, 744
Bme1390I CCNGG 2 cut(s) 242, 1512
Bme18I GGWCC 2 cut(s) 407, 1601
BmgT120I GGNCC 2 cut(s) 407, 1601
BmiI GGNNCC 2 cut(s) 1153, 1170
BmrFI CCNGG 2 cut(s) 242, 1512
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 6 cut(s) 7, 110, 393, 649, 1039, 1386
BmuI ACTGGG 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 915
BsaJI CCNNGG 2 cut(s) 973, 1359
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 1361
Bse1I ACTGG 4 cut(s) 298, 365, 385, 953
Bse3DI GCAATG 1 cut(s) 1057
BseBI CCWGG 2 cut(s) 242, 1512
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 973, 1359
BseGI GGATG 5 cut(s) 237, 384, 845, 1123, 1567
BseLI CCNNNNNNNGG 2 cut(s) 395, 1361
BseMI GCAATG 1 cut(s) 1057
BseMII CTCAG 3 cut(s) 165, 604, 1164
BseNI ACTGG 4 cut(s) 298, 365, 385, 953
BseRI GAGGAG 2 cut(s) 739, 1397
BseXI GCAGC 5 cut(s) 518, 562, 628, 674, 754
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 3 cut(s) 99, 904, 917
BshFI GGCC 6 cut(s) 952, 995, 1276, 1444, 1544, 1650
BshVI ATCGAT 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 591, 910
BslFI GGGAC 1 cut(s) 1438
BslI CCNNNNNNNGG 2 cut(s) 395, 1361
BsmAI GTCTC 3 cut(s) 140, 915, 1379
BsmFI GGGAC 1 cut(s) 1438
BsnI GGCC 6 cut(s) 952, 995, 1276, 1444, 1544, 1650
Bso31I GGTCTC 1 cut(s) 915
Bsp1286I GDGCHC 2 cut(s) 591, 910
Bsp1407I TGTACA 2 cut(s) 84, 234
Bsp143I GATC 4 cut(s) 348, 433, 1351, 1507
Bsp68I TCGCGA 1 cut(s) 917
BspACI CCGC 2 cut(s) 573, 1251
BspANI GGCC 6 cut(s) 952, 995, 1276, 1444, 1544, 1650
BspCNI CTCAG 3 cut(s) 166, 603, 1165
BspDI ATCGAT 1 cut(s) 72
BspFNI CGCG 3 cut(s) 99, 904, 917
BspLI GGNNCC 2 cut(s) 1153, 1170
BspMAI CTGCAG 2 cut(s) 508, 580
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 4 cut(s) 343, 428, 1346, 1502
BspTNI GGTCTC 1 cut(s) 915
BsrDI GCAATG 1 cut(s) 1057
BsrGI TGTACA 2 cut(s) 84, 234
BsrI ACTGG 4 cut(s) 298, 365, 385, 953
BssECI CCNNGG 2 cut(s) 973, 1359
BssMI GATC 4 cut(s) 348, 433, 1351, 1507
BssT1I CCWWGG 2 cut(s) 973, 1359
Bst2UI CCWGG 2 cut(s) 242, 1512
Bst4CI ACNGT 3 cut(s) 84, 727, 896
Bst6I CTCTTC 1 cut(s) 1635
BstAUI TGTACA 2 cut(s) 84, 234
BstC8I GCNNGC 3 cut(s) 97, 906, 1469
BstDEI CTNAG 4 cut(s) 174, 590, 1173, 1439
BstF5I GGATG 5 cut(s) 237, 384, 845, 1123, 1567
BstFNI CGCG 3 cut(s) 99, 904, 917
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 4 cut(s) 351, 436, 1354, 1510
BstMAI GTCTC 3 cut(s) 140, 915, 1379
BstMBI GATC 4 cut(s) 348, 433, 1351, 1507
BstMWI GCNNNNNNNGC 2 cut(s) 914, 1257
BstNI CCWGG 2 cut(s) 242, 1512
BstNSI RCATGY 2 cut(s) 1471, 1591
BstSCI CCNGG 2 cut(s) 240, 1510
BstSFI CTRYAG 3 cut(s) 504, 576, 1270
BstUI CGCG 3 cut(s) 99, 904, 917
BstV1I GCAGC 5 cut(s) 518, 562, 628, 674, 754
BstX2I RGATCY 2 cut(s) 348, 433
BstYI RGATCY 2 cut(s) 348, 433
Bsu15I ATCGAT 1 cut(s) 72
BsuRI GGCC 6 cut(s) 952, 995, 1276, 1444, 1544, 1650
BsuTUI ATCGAT 1 cut(s) 72
BtsCI GGATG 5 cut(s) 237, 384, 845, 1123, 1567
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 1 cut(s) 741
BtuMI TCGCGA 1 cut(s) 917
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 3 cut(s) 97, 906, 1469
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 407, 1601
ClaI ATCGAT 1 cut(s) 72
Csp6I GTAC 8 cut(s) 85, 235, 291, 880, 1419, 1537, 1578, 1608
CviAII CATG 7 cut(s) 796, 883, 1004, 1183, 1468, 1588, 1605
CviQI GTAC 8 cut(s) 85, 235, 291, 880, 1419, 1537, 1578, 1608
DdeI CTNAG 4 cut(s) 174, 590, 1173, 1439
DpnI GATC 4 cut(s) 350, 435, 1353, 1509
DpnII GATC 4 cut(s) 348, 433, 1351, 1507
DraI TTTAAA 1 cut(s) 627
EaeI YGGCCR 1 cut(s) 1648
Eam1104I CTCTTC 1 cut(s) 1635
EarI CTCTTC 1 cut(s) 1635
Ecl136II GAGCTC 1 cut(s) 589
Eco130I CCWWGG 2 cut(s) 973, 1359
Eco147I AGGCCT 1 cut(s) 1444
Eco24I GRGCYC 1 cut(s) 591
Eco31I GGTCTC 1 cut(s) 915
Eco32I GATATC 2 cut(s) 25, 1039
Eco47I GGWCC 2 cut(s) 407, 1601
Eco53kI GAGCTC 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 438, 1659
EcoICRI GAGCTC 1 cut(s) 589
EcoRII CCWGG 2 cut(s) 240, 1510
EcoRV GATATC 2 cut(s) 25, 1039
EcoT14I CCWWGG 2 cut(s) 973, 1359
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 2 cut(s) 973, 1359
FaeI CATG 7 cut(s) 799, 886, 1007, 1186, 1471, 1591, 1608
FalI AAGNNNNNCTT 2 cut(s) 1485, 1517
FaqI GGGAC 1 cut(s) 1438
FatI CATG 7 cut(s) 795, 882, 1003, 1182, 1467, 1587, 1604
FblI GTMKAC 2 cut(s) 699, 1293
Fnu4HI GCNGC 5 cut(s) 507, 576, 642, 663, 743
FokI GGATG 5 cut(s) 224, 371, 852, 1130, 1554
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 5 cut(s) 507, 576, 642, 663, 743
FspBI CTAG 4 cut(s) 957, 974, 984, 1238
GlaI GCGC 1 cut(s) 100
GluI GCNGC 5 cut(s) 507, 576, 642, 663, 743
HaeIII GGCC 6 cut(s) 952, 995, 1276, 1444, 1544, 1650
HhaI GCGC 1 cut(s) 101
Hin1II CATG 7 cut(s) 799, 886, 1007, 1186, 1471, 1591, 1608
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 1106
HinfI GANTC 5 cut(s) 74, 129, 1010, 1333, 1634
HphI GGTGA 2 cut(s) 1405, 1422
Hpy166II GTNNAC 5 cut(s) 87, 235, 700, 1294, 1419
Hpy8I GTNNAC 5 cut(s) 87, 235, 700, 1294, 1419
HpyAV CCTTC 5 cut(s) 462, 845, 1307, 1469, 1508
HpyCH4III ACNGT 3 cut(s) 84, 727, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 914, 1257
HpyF3I CTNAG 4 cut(s) 174, 590, 1173, 1439
Hsp92II CATG 7 cut(s) 799, 886, 1007, 1186, 1471, 1591, 1608
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 4 cut(s) 348, 433, 1351, 1507
LmnI GCTCC 1 cut(s) 1174
Lsp1109I GCAGC 5 cut(s) 518, 562, 628, 674, 754
LweI GCATC 6 cut(s) 7, 110, 393, 649, 1039, 1386
MaeI CTAG 4 cut(s) 957, 974, 984, 1238
MalI GATC 4 cut(s) 350, 435, 1353, 1509
MboI GATC 4 cut(s) 348, 433, 1351, 1507
MboII GAAGA 4 cut(s) 484, 973, 1019, 1652
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 2 cut(s) 348, 433
MhlI GDGCHC 2 cut(s) 591, 910
MlsI TGGCCA 1 cut(s) 1650
MluNI TGGCCA 1 cut(s) 1650
MlyI GAGTC 2 cut(s) 123, 1342
Mox20I TGGCCA 1 cut(s) 1650
MscI TGGCCA 1 cut(s) 1650
MseI TTAA 9 cut(s) 33, 204, 626, 869, 1110, 1196, 1527, 1658, 1674
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 1650
MspA1I CMGCKG 1 cut(s) 575
MspR9I CCNGG 2 cut(s) 242, 1512
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 2 cut(s) 242, 1512
MvnI CGCG 3 cut(s) 99, 904, 917
MwoI GCNNNNNNNGC 2 cut(s) 914, 1257
NdeII GATC 4 cut(s) 348, 433, 1351, 1507
NlaIII CATG 7 cut(s) 799, 886, 1007, 1186, 1471, 1591, 1608
NlaIV GGNNCC 2 cut(s) 1153, 1170
NruI TCGCGA 1 cut(s) 917
NspI RCATGY 2 cut(s) 1471, 1591
PaeI GCATGC 1 cut(s) 1471
PceI AGGCCT 1 cut(s) 1444
PfeI GAWTC 3 cut(s) 74, 1010, 1634
PflFI GACNNNGTC 1 cut(s) 132
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 5 cut(s) 508, 577, 643, 664, 744
PleI GAGTC 2 cut(s) 123, 1341
PpsI GAGTC 2 cut(s) 123, 1341
PsiI TTATAA 2 cut(s) 308, 782
Psp124BI GAGCTC 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 240, 1510
PspGI CCWGG 2 cut(s) 240, 1510
PspN4I GGNNCC 2 cut(s) 1153, 1170
PspPI GGNCC 2 cut(s) 407, 1601
PstI CTGCAG 2 cut(s) 508, 580
PsuI RGATCY 2 cut(s) 348, 433
PsyI GACNNNGTC 1 cut(s) 132
RruI TCGCGA 1 cut(s) 917
RsaI GTAC 8 cut(s) 86, 236, 292, 881, 1420, 1538, 1579, 1609
RsaNI GTAC 8 cut(s) 85, 235, 291, 880, 1419, 1537, 1578, 1608
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 591
SaqAI TTAA 9 cut(s) 33, 204, 626, 869, 1110, 1196, 1527, 1658, 1674
SatI GCNGC 5 cut(s) 507, 576, 642, 663, 743
Sau3AI GATC 4 cut(s) 348, 433, 1351, 1507
Sau96I GGNCC 2 cut(s) 407, 1601
SchI GAGTC 2 cut(s) 123, 1342
ScrFI CCNGG 2 cut(s) 242, 1512
SduI GDGCHC 2 cut(s) 591, 910
SfaNI GCATC 6 cut(s) 7, 110, 393, 649, 1039, 1386
SfcI CTRYAG 3 cut(s) 504, 576, 1270
SinI GGWCC 2 cut(s) 407, 1601
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SphI GCATGC 1 cut(s) 1471
SseBI AGGCCT 1 cut(s) 1444
SsiI CCGC 2 cut(s) 573, 1251
SspMI CTAG 4 cut(s) 957, 974, 984, 1238
SstI GAGCTC 1 cut(s) 591
StuI AGGCCT 1 cut(s) 1444
StyD4I CCNGG 2 cut(s) 240, 1510
StyI CCWWGG 2 cut(s) 973, 1359
TaaI ACNGT 3 cut(s) 84, 727, 896
TaqI TCGA 5 cut(s) 72, 228, 323, 752, 772
TatI WGTACW 4 cut(s) 84, 234, 879, 1536
TfiI GAWTC 3 cut(s) 74, 1010, 1634
Tru1I TTAA 9 cut(s) 33, 204, 626, 869, 1110, 1196, 1527, 1658, 1674
Tru9I TTAA 9 cut(s) 33, 204, 626, 869, 1110, 1196, 1527, 1658, 1674
TscAI CASTG 1 cut(s) 741
TseI GCWGC 5 cut(s) 506, 575, 641, 662, 742
TspDTI ATGAA 4 cut(s) 1020, 1365, 1614, 1698
TspRI CASTG 1 cut(s) 741
Tth111I GACNNNGTC 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 407, 1601
XapI RAATTY 3 cut(s) 776, 1069, 1286
XceI RCATGY 2 cut(s) 1471, 1591
XcmI CCANNNNNNNNNTGG 1 cut(s) 1162
XmaJI CCTAGG 1 cut(s) 973
XmiI GTMKAC 2 cut(s) 699, 1293
XspI CTAG 4 cut(s) 957, 974, 984, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.