Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Forward (+)

1772973 .. 1775223

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000535

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCTTTTGTGTTTACATGTCCAGATTTTCACATTGCCAAATGATACATTAATCTATCCTGCTCATGATTACAAGGGATTCACTGTATGGTACTATCTGATTTCTATTTCTTCCCTACCAAGTCTTGGCAGCTGCTTATGTCACATGTCTTCTTGGAGGCAGGTTAGCACCGTGGGGGAGGAGATGCTCTATAATCCCCGGCTTACAAAAAATAAGGAGGGATTTGAAAAGATCATGAAAAAACATCATTCCTTACATATTAATTGTGGTGGAAGGGAGATAAATATTGGTGGGGTTAAGTATCAAGTTAATACGGAACAAAAAGGTGCTTCATTCTATTACTCATCTCAGACCCAGAACTGGGCCTTCAGCAGTACAGGGAACTTCATGGATAATGATGTTGATGCAGTACGTACTGGTAAGCCCTTGATGCAGACATTCACTTCGATGGTTTCAAGTCATACAATCAAGATCCATTTTTACTGGGCTGGAAAAGGAACTACTGGCATCCCAGATAAAGGATTTTATGGTCCTCTCATATCAGCTATATCAGTAGATCCTAACTTTGAAGTTCCTTCAGATGATGGCAAAAAGAAGAAAGCCATAACATCAATCGGAATATTAACTGCAGCACTTCTGTTTCTGCTTTTGGTTGCAGGTATTATGTGGAGTAGGGGCTGCATAGGAGGAAAGATCGCTGCAGATAAAGGTTTGAAGCATGTTAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

244

Amino Acids

26.92

Weight (kDa)

9.18

Isoelectric Point (pI)

24.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	151, 647
AccB7I	CCANNNNNTGG	1 cut(s)	125
AclWI	GGATC	2 cut(s)	466, 551
AcuI	CTGAAG	2 cut(s)	352, 561
AfaI	GTAC	4 cut(s)	92, 376, 411, 415
AfiI	CCNNNNNNNGG	4 cut(s)	125, 360, 361, 518
AflIII	ACRYGT	2 cut(s)	16, 144
AgsI	TTSAA	4 cut(s)	227, 456, 569, 715
AluBI	AGCT	2 cut(s)	132, 545
AluI	AGCT	2 cut(s)	132, 545
AlwI	GGATC	2 cut(s)	466, 551
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	5 cut(s)	129, 132, 629, 678, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	427, 459
AseI	ATTAAT	2 cut(s)	50, 261
AspS9I	GGNCC	2 cut(s)	363, 530
AsuC2I	CCSGG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	5 cut(s)	119, 141, 641, 665, 685
BccI	CCATC	2 cut(s)	442, 578
BcnI	CCSGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	730
BfmI	CTRYAG	2 cut(s)	627, 699
BfuAI	ACCTGC	2 cut(s)	151, 647
BisI	GCNGC	5 cut(s)	130, 133, 630, 679, 699
BlsI	GCNGC	5 cut(s)	131, 134, 631, 680, 700
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	363, 530
BmrFI	CCNGG	1 cut(s)	199
BmrI	ACTGGG	2 cut(s)	370, 493
BmsI	GCATC	4 cut(s)	174, 394, 420, 516
BmuI	ACTGGG	2 cut(s)	370, 493
BpiI	GAAGAC	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	171, 197
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 360, 361, 518
Bse1I	ACTGG	4 cut(s)	365, 421, 488, 508
Bse3DI	GCAATG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	171, 197
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	4 cut(s)	125, 360, 361, 518
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	4 cut(s)	365, 421, 488, 508
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	5 cut(s)	119, 141, 641, 665, 685
BshFI	GGCC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	199
BslI	CCNNNNNNNGG	4 cut(s)	125, 360, 361, 518
BsnI	GGCC	1 cut(s)	365
Bsp143I	GATC	4 cut(s)	231, 471, 556, 693
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	2 cut(s)	64, 234
BspMAI	CTGCAG	2 cut(s)	631, 703
BspMI	ACCTGC	2 cut(s)	151, 647
BspPI	GGATC	2 cut(s)	466, 551
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	4 cut(s)	365, 421, 488, 508
BssECI	CCNNGG	2 cut(s)	171, 197
BssMI	GATC	4 cut(s)	231, 471, 556, 693
Bst4CI	ACNGT	2 cut(s)	85, 172
BstBAI	YACGTR	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	348
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	507
BstKTI	GATC	4 cut(s)	234, 474, 559, 696
BstMBI	GATC	4 cut(s)	231, 471, 556, 693
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNSI	RCATGY	3 cut(s)	20, 148, 722
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	2 cut(s)	627, 699
BstSNI	TACGTA	1 cut(s)	413
BstV1I	GCAGC	5 cut(s)	119, 141, 641, 665, 685
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	471, 556
BstYI	RGATCY	2 cut(s)	471, 556
BsuRI	GGCC	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	2 cut(s)	151, 647
CciI	TCATGA	2 cut(s)	64, 234
Cfr13I	GGNCC	2 cut(s)	363, 530
Csp6I	GTAC	4 cut(s)	91, 375, 410, 414
CviAII	CATG	6 cut(s)	17, 65, 145, 235, 388, 719
CviJI	RGCY	8 cut(s)	132, 202, 365, 424, 488, 545, 602, 678
CviKI_1	RGCY	8 cut(s)	132, 202, 365, 424, 488, 545, 602, 678
CviQI	GTAC	4 cut(s)	91, 375, 410, 414
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	4 cut(s)	233, 473, 558, 695
DpnII	GATC	4 cut(s)	231, 471, 556, 693
Eco105I	TACGTA	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	2 cut(s)	352, 561
FaeI	CATG	6 cut(s)	20, 68, 148, 238, 391, 722
FatI	CATG	6 cut(s)	16, 64, 144, 234, 387, 718
Fnu4HI	GCNGC	5 cut(s)	130, 133, 630, 679, 699
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	5 cut(s)	130, 133, 630, 679, 699
FspBI	CTAG	1 cut(s)	730
GluI	GCNGC	5 cut(s)	130, 133, 630, 679, 699
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	1 cut(s)	199
Hin1II	CATG	6 cut(s)	20, 68, 148, 238, 391, 722
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	4 cut(s)	99, 351, 580, 617
Hpy188III	TCNNGA	4 cut(s)	22, 65, 235, 469
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	267, 376, 585
HpyCH4III	ACNGT	2 cut(s)	85, 172
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	6 cut(s)	407, 433, 629, 656, 681, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	6 cut(s)	20, 68, 148, 238, 391, 722
Kzo9I	GATC	4 cut(s)	231, 471, 556, 693
Lsp1109I	GCAGC	5 cut(s)	119, 141, 641, 665, 685
LweI	GCATC	4 cut(s)	174, 394, 420, 516
MaeI	CTAG	1 cut(s)	730
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	4 cut(s)	233, 473, 558, 695
MboI	GATC	4 cut(s)	231, 471, 556, 693
MboII	GAAGA	3 cut(s)	102, 141, 607
MflI	RGATCY	2 cut(s)	471, 556
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	5 cut(s)	150, 172, 211, 543, 680
MseI	TTAA	6 cut(s)	50, 261, 297, 309, 623, 723
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	430
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	231, 471, 556, 693
NlaIII	CATG	6 cut(s)	20, 68, 148, 238, 391, 722
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	3 cut(s)	20, 148, 722
PagI	TCATGA	2 cut(s)	64, 234
PciI	ACATGT	2 cut(s)	16, 144
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	131, 134, 631, 680, 700
Ppu21I	YACGTR	1 cut(s)	413
PscI	ACATGT	2 cut(s)	16, 144
PshBI	ATTAAT	2 cut(s)	50, 261
PspPI	GGNCC	2 cut(s)	363, 530
PstI	CTGCAG	2 cut(s)	631, 703
PsuI	RGATCY	2 cut(s)	471, 556
PvuII	CAGCTG	1 cut(s)	132
RsaI	GTAC	4 cut(s)	92, 376, 411, 415
RsaNI	GTAC	4 cut(s)	91, 375, 410, 414
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	6 cut(s)	50, 261, 297, 309, 623, 723
SatI	GCNGC	5 cut(s)	130, 133, 630, 679, 699
Sau3AI	GATC	4 cut(s)	231, 471, 556, 693
Sau96I	GGNCC	2 cut(s)	363, 530
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	7 cut(s)	134, 165, 328, 415, 547, 661, 712
SfaNI	GCATC	4 cut(s)	174, 394, 420, 516
SfcI	CTRYAG	2 cut(s)	627, 699
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	446
SnaBI	TACGTA	1 cut(s)	413
Sse9I	AATT	1 cut(s)	262
SspI	AATATT	2 cut(s)	286, 621
SspMI	CTAG	1 cut(s)	730
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	85, 172
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	1 cut(s)	446
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	6 cut(s)	50, 261, 297, 309, 623, 723
Tru9I	TTAA	6 cut(s)	50, 261, 297, 309, 623, 723
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	5 cut(s)	129, 132, 629, 678, 698
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	251, 321, 376
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	530
VspI	ATTAAT	2 cut(s)	50, 261
XceI	RCATGY	3 cut(s)	20, 148, 722
XspI	CTAG	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.