Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Forward (+)

67779629 .. 67784764

Gene Structure 5136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGATTTGCAAACAGGATTTTTTACTTTAAAACAGATAAAAGCTGCGACAAAAAACTTTGATGCAGCAAACAAACTTGGGGAGGGTGGTTTTTGTTCAGTCTACAAGGGTCTTTTAGCAGATGGCACAGTAATTGCAGTGAAGCAGCTCTCCTCAAAATCAAAGCAAGGAAATCGAGAATTTATAAATGAGATAGGCATGATTTCTGCCTTGCAACATCCAAACCTTGTGAAGCTGTATGGATGTTGTGTTGAAGGAAACCAGATGTTGTTAATTTACGAGTACATGGAGAATAACTGTGTATCACGTGCTCTTTTCGCGAGAGACCCTACTTGCAGATTGAAATTGGACTGGCCTACTAGGAAGAACATTTGCCTAGGTATTGCTAGAGGTTTGGCCTATCTACATGAAGAATCCAGAATAAGAATAGTGCATCGCGATATCAAGACGAGCAATGTGTTGCTTGATAAGAATTTCAATGCTAAAATCTCTGATTTTGGCTTGGCAAAGCTTAATGAGGATGGCAACACCCACATTAGCACTCGGATTGCTGGAACCATTGGTTATATGGCTCCTGAGTATGCCATGCGTGGCTACTTAACTGCAAAAGCAGATGTTTATAGCTTTGGAGTTGTGGCACTAGAAATTGTTAGCGGAAAGAGCAATACAAACTATAGGCCAAAGGAGGAATTCGTCTACCTTCTTGATTGGGCTTATGTTCTGCAAGAGAGGGGGAGTCTATTGGAGTCGGTTGATCCAGCCTTGGGTTCAGAATATTCGTCAGAGGAGACAATGGTGATGCTAAATGTTGCTCTCTTATGCTCCAATGCCTCTCCAACTCTAAGGCCTAAAATCTTAGCTCACTTTCATTATATTGAACATTTGATTATGTATATGAGTTACAAGTCATTATCACACATGCCTGTCATTGTTTTGTGCTTTTGTACATTTGAACTGATGCTCATGATTAGGTTTGTGTACATGAGACAATGGTGGATTAGGTTTATATTGAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

339

Amino Acids

38.5

Weight (kDa)

8.61

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 224	7.4e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	23 - 241	7.2e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
AccI	GTMKAC	2 cut(s)	102, 696
AccII	CGCG	2 cut(s)	320, 438
AciI	CCGC	1 cut(s)	654
AclWI	GGATC	1 cut(s)	749
AcsI	RAATTY	3 cut(s)	179, 472, 689
AcvI	CACGTG	1 cut(s)	308
AfaI	GTAC	3 cut(s)	284, 946, 980
AfiI	CCNNNNNNNGG	1 cut(s)	764
AgsI	TTSAA	6 cut(s)	254, 343, 478, 878, 953, 1012
AluBI	AGCT	6 cut(s)	44, 148, 235, 511, 624, 860
AluI	AGCT	6 cut(s)	44, 148, 235, 511, 624, 860
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	3 cut(s)	318, 782, 979
AlwI	GGATC	1 cut(s)	749
AoxI	GGCC	4 cut(s)	353, 396, 677, 845
ApeKI	GCWGC	3 cut(s)	44, 65, 145
ApoI	RAATTY	3 cut(s)	179, 472, 689
AspA2I	CCTAGG	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	808
AvrII	CCTAGG	1 cut(s)	376
BbrPI	CACGTG	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	3 cut(s)	31, 77, 157
BccI	CCATC	2 cut(s)	116, 515
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BcoDI	GTCTC	3 cut(s)	318, 782, 979
BfaI	CTAG	4 cut(s)	360, 377, 387, 641
BfmI	CTRYAG	1 cut(s)	673
BisI	GCNGC	3 cut(s)	45, 66, 146
BlnI	CCTAGG	1 cut(s)	376
BlsI	GCNGC	3 cut(s)	46, 67, 147
BmiI	GGNNCC	2 cut(s)	556, 573
BmsI	GCATC	4 cut(s)	52, 442, 789, 948
BsaAI	YACGTR	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	376, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	764
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	460
BseDI	CCNNGG	2 cut(s)	376, 762
BseGI	GGATG	3 cut(s)	217, 248, 526
BseLI	CCNNNNNNNGG	1 cut(s)	764
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	2 cut(s)	142, 800
BseXI	GCAGC	3 cut(s)	31, 77, 157
Bsh1236I	CGCG	2 cut(s)	320, 438
BshFI	GGCC	4 cut(s)	355, 398, 679, 847
BsiHKAI	GWGCWC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	764
BsmAI	GTCTC	3 cut(s)	318, 782, 979
BsnI	GGCC	4 cut(s)	355, 398, 679, 847
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp1407I	TGTACA	2 cut(s)	944, 978
Bsp143I	GATC	1 cut(s)	754
Bsp68I	TCGCGA	2 cut(s)	320, 438
BspACI	CCGC	1 cut(s)	654
BspANI	GGCC	4 cut(s)	355, 398, 679, 847
BspCNI	CTCAG	1 cut(s)	568
BspFNI	CGCG	2 cut(s)	320, 438
BspHI	TCATGA	1 cut(s)	963
BspLI	GGNNCC	2 cut(s)	556, 573
BspPI	GGATC	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	460
BsrGI	TGTACA	2 cut(s)	944, 978
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	376, 762
BssMI	GATC	1 cut(s)	754
BssT1I	CCWWGG	2 cut(s)	376, 762
Bst4CI	ACNGT	2 cut(s)	130, 299
BstAUI	TGTACA	2 cut(s)	944, 978
BstBAI	YACGTR	1 cut(s)	308
BstDEI	CTNAG	3 cut(s)	576, 842, 856
BstF5I	GGATG	3 cut(s)	217, 248, 526
BstFNI	CGCG	2 cut(s)	320, 438
BstKTI	GATC	1 cut(s)	757
BstMAI	GTCTC	3 cut(s)	318, 782, 979
BstMBI	GATC	1 cut(s)	754
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 660
BstNSI	RCATGY	1 cut(s)	922
BstSFI	CTRYAG	1 cut(s)	673
BstUI	CGCG	2 cut(s)	320, 438
BstV1I	GCAGC	3 cut(s)	31, 77, 157
BsuRI	GGCC	4 cut(s)	355, 398, 679, 847
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	217, 248, 526
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
BtuMI	TCGCGA	2 cut(s)	320, 438
CciI	TCATGA	1 cut(s)	963
Csp6I	GTAC	3 cut(s)	283, 945, 979
CviAII	CATG	7 cut(s)	199, 286, 407, 586, 919, 964, 982
CviQI	GTAC	3 cut(s)	283, 945, 979
DdeI	CTNAG	3 cut(s)	576, 842, 856
DpnI	GATC	1 cut(s)	756
DpnII	GATC	1 cut(s)	754
DraI	TTTAAA	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	376, 762
Eco147I	AGGCCT	1 cut(s)	847
Eco31I	GGTCTC	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	442
Eco72I	CACGTG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	689
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	376, 762
ErhI	CCWWGG	2 cut(s)	376, 762
FaeI	CATG	7 cut(s)	202, 289, 410, 589, 922, 967, 985
FatI	CATG	7 cut(s)	198, 285, 406, 585, 918, 963, 981
FblI	GTMKAC	2 cut(s)	102, 696
Fnu4HI	GCNGC	3 cut(s)	45, 66, 146
FokI	GGATG	3 cut(s)	204, 255, 533
Fsp4HI	GCNGC	3 cut(s)	45, 66, 146
FspBI	CTAG	4 cut(s)	360, 377, 387, 641
GluI	GCNGC	3 cut(s)	45, 66, 146
HaeIII	GGCC	4 cut(s)	355, 398, 679, 847
Hin1II	CATG	7 cut(s)	202, 289, 410, 589, 922, 967, 985
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	413, 736, 746
HphI	GGTGA	1 cut(s)	808
Hpy166II	GTNNAC	3 cut(s)	103, 697, 979
Hpy188I	TCNGA	4 cut(s)	493, 546, 772, 784
Hpy188III	TCNNGA	8 cut(s)	176, 319, 417, 437, 445, 575, 704, 964
Hpy8I	GTNNAC	3 cut(s)	103, 697, 979
HpyAV	CCTTC	2 cut(s)	248, 710
HpyCH4III	ACNGT	2 cut(s)	130, 299
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	8 cut(s)	10, 65, 137, 214, 336, 433, 605, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 660
HpyF3I	CTNAG	3 cut(s)	576, 842, 856
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	7 cut(s)	202, 289, 410, 589, 922, 967, 985
Kzo9I	GATC	1 cut(s)	754
LmnI	GCTCC	2 cut(s)	577, 827
LpnPI	CCDG	7 cut(s)	275, 337, 430, 537, 588, 771, 936
Lsp1109I	GCAGC	3 cut(s)	31, 77, 157
LweI	GCATC	4 cut(s)	52, 442, 789, 948
MaeI	CTAG	4 cut(s)	360, 377, 387, 641
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	899
MalI	GATC	1 cut(s)	756
MboI	GATC	1 cut(s)	754
MboII	GAAGA	2 cut(s)	376, 422
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	7 cut(s)	132, 179, 273, 344, 472, 645, 689
MlyI	GAGTC	2 cut(s)	745, 755
MmeI	TCCRAC	1 cut(s)	860
MnlI	CCTC	8 cut(s)	76, 163, 383, 511, 679, 723, 778, 841
MseI	TTAA	4 cut(s)	29, 272, 513, 599
MvnI	CGCG	2 cut(s)	320, 438
MwoI	GCNNNNNNNGC	2 cut(s)	317, 660
NdeII	GATC	1 cut(s)	754
NlaIII	CATG	7 cut(s)	202, 289, 410, 589, 922, 967, 985
NlaIV	GGNNCC	2 cut(s)	556, 573
NruI	TCGCGA	2 cut(s)	320, 438
NspI	RCATGY	1 cut(s)	922
PagI	TCATGA	1 cut(s)	963
PceI	AGGCCT	1 cut(s)	847
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	46, 67, 147
PleI	GAGTC	2 cut(s)	744, 754
PmaCI	CACGTG	1 cut(s)	308
PmlI	CACGTG	1 cut(s)	308
PpsI	GAGTC	2 cut(s)	744, 754
Ppu21I	YACGTR	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	185
PspCI	CACGTG	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	556, 573
RruI	TCGCGA	2 cut(s)	320, 438
RsaI	GTAC	3 cut(s)	284, 946, 980
RsaNI	GTAC	3 cut(s)	283, 945, 979
SaqAI	TTAA	4 cut(s)	29, 272, 513, 599
SatI	GCNGC	3 cut(s)	45, 66, 146
Sau3AI	GATC	1 cut(s)	754
SchI	GAGTC	2 cut(s)	745, 755
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	4 cut(s)	52, 442, 789, 948
SfcI	CTRYAG	1 cut(s)	673
Sse9I	AATT	7 cut(s)	132, 179, 273, 344, 472, 645, 689
SseBI	AGGCCT	1 cut(s)	847
SsiI	CCGC	1 cut(s)	654
SspI	AATATT	1 cut(s)	776
SspMI	CTAG	4 cut(s)	360, 377, 387, 641
StuI	AGGCCT	1 cut(s)	847
StyI	CCWWGG	2 cut(s)	376, 762
TaaI	ACNGT	2 cut(s)	130, 299
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	175
TasI	AATT	7 cut(s)	132, 179, 273, 344, 472, 645, 689
TatI	WGTACW	3 cut(s)	282, 944, 978
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	4 cut(s)	29, 272, 513, 599
Tru9I	TTAA	4 cut(s)	29, 272, 513, 599
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	3 cut(s)	44, 65, 145
TspDTI	ATGAA	2 cut(s)	423, 857
TspRI	CASTG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	179, 472, 689
XceI	RCATGY	1 cut(s)	922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XmaJI	CCTAGG	1 cut(s)	376
XmiI	GTMKAC	2 cut(s)	102, 696
XspI	CTAG	4 cut(s)	360, 377, 387, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.