Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Reverse (-)

54144294 .. 54148086

Gene Structure 3793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0421300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCATCAAAGTTACCTCAGTTGCAGACAAAGCTGGTCCAGGTGTCAAACTTATTAGCCAAGAATGGAAATACCTATTACAAGCAGATGATGGAGAAGAACAAGGGCTATATCCAGGAGCCACCCACCATCGAGAACTGTCAAACATTAGCAAAGCAACTGTTCTATACTCGTCTTGCCAGCATTCCTAGTCGCTACGAAGCATTCTGGAAGGAACTTGAAGGTCTCAAGGACGTTTTAAAAACCACAGGGGAACTGAATGTGGAGAAAGCTGGCATTATTGCTCTGTTTGGGGTCGAGTGCTTTGCTTGGTTCTGGACTGGTGAGGTTGTAGGAAGGGGTGGTACAATCACAGGCTACTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

122

Amino Acids

13.81

Weight (kDa)

8.85

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_G	PF04718	17 - 120	3.5e-21	Mitochondrial ATP synthase g subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	39, 114
AluBI	AGCT	2 cut(s)	34, 272
AluI	AGCT	2 cut(s)	34, 272
Alw26I	GTCTC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	328, 360
BccI	CCATC	2 cut(s)	85, 137
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	2 cut(s)	41, 116
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	41, 116
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	41, 116
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	41, 116
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	230
BsmI	GAATGC	2 cut(s)	183, 203
Bso31I	GGTCTC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	41, 116
Bst4CI	ACNGT	2 cut(s)	140, 162
BstC8I	GCNNGC	2 cut(s)	181, 274
BstDEI	CTNAG	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	2 cut(s)	41, 116
BstSCI	CCNGG	2 cut(s)	39, 114
Cac8I	GCNNGC	2 cut(s)	181, 274
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	345
CviJI	RGCY	6 cut(s)	34, 59, 108, 121, 272, 357
CviKI_1	RGCY	6 cut(s)	34, 59, 108, 121, 272, 357
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	1 cut(s)	18
DraI	TTTAAA	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	39, 114
FaiI	YATR	3 cut(s)	111, 168, 363
FspBI	CTAG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	335
Hpy188III	TCNNGA	3 cut(s)	133, 208, 316
HpyAV	CCTTC	3 cut(s)	205, 215, 330
HpyCH4III	ACNGT	2 cut(s)	140, 162
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	118
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	109
MnlI	CCTC	2 cut(s)	27, 319
MseI	TTAA	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	41, 116
Mva1269I	GAATGC	2 cut(s)	183, 203
MvaI	CCWGG	2 cut(s)	41, 116
MwoI	GCNNNNNNNGC	1 cut(s)	31
NlaIV	GGNNCC	1 cut(s)	120
PctI	GAATGC	2 cut(s)	183, 203
PfoI	TCCNGGA	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	39, 114
PspGI	CCWGG	2 cut(s)	39, 114
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	239
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	41, 116
SetI	ASST	8 cut(s)	19, 36, 45, 77, 226, 237, 274, 330
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	39, 114
TaaI	ACNGT	2 cut(s)	140, 162
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	132, 297
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	37
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.