Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Forward (+)

15834131 .. 15836392

Gene Structure 2262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001460

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTTTTGTGTTTACATGTCCAGATTTTCACATTGCCAAATGATACATTAATCTATCCTGCTCATGATTACAAGGGATTCACTGTATGGAACTATCTGATTTCTATTTCTTCCCTACCAAGTCTTGGCAGCTGCTTATGTCACATGTCTTCTTGGAGGCAGGTTAGCACCGTGGGGGAGGAGATGCTCTATAATCCCCGGCTTACAAAAAATAAGGGGAAAAAGCTTGCTGTTTGTCTGCAGCTACTAAAAGTTCAGTTATATTATGTCTTGAAAGCCTTATATGAAATGAGTGCTTTCGAGGTCTTGATCGCTTTCTTGCTGAGTGTGATAAAGACTGCCTTGGTTCTTTATTGCAGAAATTTAGTAGAGAGTTATTCCTCATCAGCTGATAATATAAGTAGAGTCGCAACATGCTTAAAAAGAAATTATCCATGTTCTGCTTCGGGAGCAAAACATCATTCCTTACATATTAATTGTGGTGGAAGGGAGATAAATATTGGTGGGGTTAAGTATCAAGTTAATACGGAACAAAAAGGTGCTTCATTCTATTACTCATCTCATAACCAGAACTGGGCCTTCAGCAGTACAGGGAACTTCATGGATATTGATGTTGATGCAGTACGTACTGGTAAGCCCTTGATGCAGACATTCACTTCGATGGTTTCAAGTCATACACTCAAGATCCATTTTTACTGGGCTGGAAAAGGAACTACTAGCATCCCAGATAGAGGATTTTATGGTCCTCTCATATCAGCTATATCAGTAGATCCTAACTGTGAAGTTCCTTCAGATGATGGCAAAAAGAAGAAAGCCATAACATCAATCGGAATATTAACTGCAGCACTTCTGTTTCTGCTTTTGGTTGCAGGTATTATGTGGAGTAGGGGCTGCATAGGAGGAAAGATCGCTGCAGATAAAGGTTTGAAGCATGTTAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

315

Amino Acids

34.66

Weight (kDa)

9.24

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	151, 860
AccB7I	CCANNNNNTGG	1 cut(s)	125
AclWI	GGATC	2 cut(s)	679, 764
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	565, 774
AfaI	GTAC	3 cut(s)	589, 624, 628
AfiI	CCNNNNNNNGG	3 cut(s)	125, 574, 731
AflIII	ACRYGT	2 cut(s)	16, 144
AgsI	TTSAA	3 cut(s)	274, 669, 928
AluBI	AGCT	5 cut(s)	132, 226, 244, 389, 758
AluI	AGCT	5 cut(s)	132, 226, 244, 389, 758
AlwI	GGATC	2 cut(s)	679, 764
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	6 cut(s)	129, 132, 241, 842, 891, 911
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AseI	ATTAAT	2 cut(s)	50, 474
AspS9I	GGNCC	2 cut(s)	576, 743
AsuC2I	CCSGG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	743
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	6 cut(s)	119, 141, 253, 854, 878, 898
BccI	CCATC	2 cut(s)	655, 791
BcnI	CCSGG	1 cut(s)	199
BfaI	CTAG	2 cut(s)	717, 943
BfmI	CTRYAG	3 cut(s)	239, 840, 912
BfuAI	ACCTGC	2 cut(s)	151, 860
BisI	GCNGC	6 cut(s)	130, 133, 242, 843, 892, 912
BlsI	GCNGC	6 cut(s)	131, 134, 243, 844, 893, 913
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	576, 743
BmrFI	CCNGG	1 cut(s)	199
BmrI	ACTGGG	2 cut(s)	583, 706
BmsI	GCATC	4 cut(s)	174, 607, 633, 729
BmuI	ACTGGG	2 cut(s)	583, 706
BpiI	GAAGAC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	626
BsaJI	CCNNGG	3 cut(s)	171, 197, 342
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 574, 731
Bse1I	ACTGG	3 cut(s)	578, 634, 701
Bse3DI	GCAATG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	171, 197, 342
BseGI	GGATG	1 cut(s)	720
BseLI	CCNNNNNNNGG	3 cut(s)	125, 574, 731
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	3 cut(s)	578, 634, 701
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	6 cut(s)	119, 141, 253, 854, 878, 898
BshFI	GGCC	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	199
BslI	CCNNNNNNNGG	3 cut(s)	125, 574, 731
BsnI	GGCC	1 cut(s)	578
Bsp143I	GATC	4 cut(s)	309, 684, 769, 906
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	64
BspMAI	CTGCAG	3 cut(s)	243, 844, 916
BspMI	ACCTGC	2 cut(s)	151, 860
BspPI	GGATC	2 cut(s)	679, 764
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	3 cut(s)	578, 634, 701
BssECI	CCNNGG	3 cut(s)	171, 197, 342
BssMI	GATC	4 cut(s)	309, 684, 769, 906
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	3 cut(s)	85, 172, 779
BstBAI	YACGTR	1 cut(s)	626
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	720
BstKTI	GATC	4 cut(s)	312, 687, 772, 909
BstMBI	GATC	4 cut(s)	309, 684, 769, 906
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 643
BstNSI	RCATGY	4 cut(s)	20, 148, 417, 935
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	3 cut(s)	239, 840, 912
BstSNI	TACGTA	1 cut(s)	626
BstV1I	GCAGC	6 cut(s)	119, 141, 253, 854, 878, 898
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	684, 769
BstYI	RGATCY	2 cut(s)	684, 769
BsuRI	GGCC	1 cut(s)	578
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	2 cut(s)	151, 860
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	576, 743
Csp6I	GTAC	3 cut(s)	588, 623, 627
CviAII	CATG	7 cut(s)	17, 65, 145, 414, 435, 601, 932
CviQI	GTAC	3 cut(s)	588, 623, 627
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	4 cut(s)	311, 686, 771, 908
DpnII	GATC	4 cut(s)	309, 684, 769, 906
Eco105I	TACGTA	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	2 cut(s)	565, 774
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	7 cut(s)	20, 68, 148, 417, 438, 604, 935
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	7 cut(s)	16, 64, 144, 413, 434, 600, 931
Fnu4HI	GCNGC	6 cut(s)	130, 133, 242, 843, 892, 912
FokI	GGATG	1 cut(s)	707
Fsp4HI	GCNGC	6 cut(s)	130, 133, 242, 843, 892, 912
FspBI	CTAG	2 cut(s)	717, 943
GluI	GCNGC	6 cut(s)	130, 133, 242, 843, 892, 912
HaeIII	GGCC	1 cut(s)	578
HapII	CCGG	1 cut(s)	199
Hin1II	CATG	7 cut(s)	20, 68, 148, 417, 438, 604, 935
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	2 cut(s)	78, 405
HpaII	CCGG	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	3 cut(s)	99, 793, 830
Hpy188III	TCNNGA	6 cut(s)	22, 65, 271, 307, 447, 682
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	480, 589, 798
HpyCH4III	ACNGT	3 cut(s)	85, 172, 779
HpyCH4IV	ACGT	1 cut(s)	625
HpyCH4V	TGCA	8 cut(s)	241, 357, 620, 646, 842, 869, 894, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 643
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	625
Hsp92II	CATG	7 cut(s)	20, 68, 148, 417, 438, 604, 935
Kzo9I	GATC	4 cut(s)	309, 684, 769, 906
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	6 cut(s)	119, 141, 253, 854, 878, 898
LweI	GCATC	4 cut(s)	174, 607, 633, 729
MaeI	CTAG	2 cut(s)	717, 943
MaeII	ACGT	1 cut(s)	625
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	4 cut(s)	311, 686, 771, 908
MboI	GATC	4 cut(s)	309, 684, 769, 906
MboII	GAAGA	3 cut(s)	102, 141, 820
MflI	RGATCY	2 cut(s)	684, 769
MluCI	AATT	3 cut(s)	361, 427, 475
MlyI	GAGTC	1 cut(s)	414
MnlI	CCTC	7 cut(s)	150, 172, 295, 391, 725, 756, 893
MseI	TTAA	7 cut(s)	50, 419, 474, 510, 522, 836, 936
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	2 cut(s)	132, 389
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	449, 643
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	309, 684, 769, 906
NlaIII	CATG	7 cut(s)	20, 68, 148, 417, 438, 604, 935
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	4 cut(s)	20, 148, 417, 935
PagI	TCATGA	1 cut(s)	64
PciI	ACATGT	2 cut(s)	16, 144
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	6 cut(s)	131, 134, 243, 844, 893, 913
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Ppu21I	YACGTR	1 cut(s)	626
PscI	ACATGT	2 cut(s)	16, 144
PshBI	ATTAAT	2 cut(s)	50, 474
PspPI	GGNCC	2 cut(s)	576, 743
PstI	CTGCAG	3 cut(s)	243, 844, 916
PsuI	RGATCY	2 cut(s)	684, 769
PvuII	CAGCTG	2 cut(s)	132, 389
RsaI	GTAC	3 cut(s)	589, 624, 628
RsaNI	GTAC	3 cut(s)	588, 623, 627
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	7 cut(s)	50, 419, 474, 510, 522, 836, 936
SatI	GCNGC	6 cut(s)	130, 133, 242, 843, 892, 912
Sau3AI	GATC	4 cut(s)	309, 684, 769, 906
Sau96I	GGNCC	2 cut(s)	576, 743
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	199
SfaNI	GCATC	4 cut(s)	174, 607, 633, 729
SfcI	CTRYAG	3 cut(s)	239, 840, 912
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SnaBI	TACGTA	1 cut(s)	626
Sse9I	AATT	3 cut(s)	361, 427, 475
SspI	AATATT	2 cut(s)	499, 834
SspMI	CTAG	2 cut(s)	717, 943
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	85, 172, 779
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	2 cut(s)	300, 659
TasI	AATT	3 cut(s)	361, 427, 475
TatI	WGTACW	1 cut(s)	587
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	7 cut(s)	50, 419, 474, 510, 522, 836, 936
Tru9I	TTAA	7 cut(s)	50, 419, 474, 510, 522, 836, 936
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	6 cut(s)	129, 132, 241, 842, 891, 911
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	300, 534, 589
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	743
VspI	ATTAAT	2 cut(s)	50, 474
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	4 cut(s)	20, 148, 417, 935
XspI	CTAG	2 cut(s)	717, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.