Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001943

Physical Location & Seq

Genomic Coordinates Reverse (-)

27538047 .. 27539878

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG126900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTCGCCAGAAGACCGAGAGAACAGTCTCATCGACATTGTCTGAGTTATCTGTAACGGTAACACTAAATAATCTATTCTGCCTATCAGTTTTCCTGGCCATTGTTTACATCAAGGGATTGTATTGGGACTTCAGATATGAGGTGCTGGTTCTCGTTATTGTTTGCATTGTGATGGGTGCTCTCACCAACTTCCGCACCATTTTGCCTCTTTGGACATCGGTAGTAGCCATCCTGCTTTATCCCTTGTTGCTCGCATTGGTTTACATCCTGCATTCTATTTTTGACTTTGAAGTTCCTTTAGATGATGGCAAAAAGAAGAAAGCCATAACATCAATCGGAATATTAACTACAGCACTTCTGCTTCTGCTTTTGGTTGCAGGTATTATGTGGAGTAGGGGTTGCATAGGAGGAAAGATCGCCGCAGATAAAGGTTTGAAGCATGTTAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005432 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006816 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009506 GO:0009628 GO:0009651 GO:0009987 GO:0015075 GO:0015077 GO:0015081 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015318 GO:0015368 GO:0015491 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031090 GO:0033554 GO:0034220 GO:0035725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055065 GO:0055074 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071214 GO:0071470 GO:0071472 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099516 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Na_Ca_ex

Protein Analysis

151

Amino Acids

16.73

Weight (kDa)

9.38

Isoelectric Point (pI)

12.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07650 AT1G07650 AT1G07650 AT1G07650
fragaria_vesca	FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550 FvH4_6g37550
malus_domestica	MD09G1156900.v1.1
prunus_persica	Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1 Prupe.3G168800_v2.0.a1
pyrus_communis	pycom09g07560 pycom11g23700
rosa_chinensis	RchiOBHm_Chr2g0149971 RchiOBHm_Chr2g0150431
rosa_laevigata	RLG00000000535 RLG00000001460 RLG00000011700 RLG00000016818 RLG00000020498 RLG00000030032 RLG00000034736
rosa_multiflora	Rmu_co8438829.1_g000001 Rmu_sc0020041.1_g000001 Rmu_ssc0000480.1_g000017
rosa_roxburghii	Rroxscaffold_2G00097110
rosa_rugosa	Rorug02G0421300
rosa_samantha	Rh2DG501600 Rh4AG126900
rosa_wichuraiana	Rw2G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	371
AciI	CCGC	2 cut(s)	196, 423
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	293, 439
AjnI	CCWGG	1 cut(s)	96
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	178
BalI	TGGCCA	1 cut(s)	101
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	184
BccI	CCATC	3 cut(s)	169, 239, 302
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
BseBI	CCWGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	231, 267
BseMII	CTCAG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	417
BspACI	CCGC	2 cut(s)	196, 423
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	371
BssMI	GATC	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	28, 61
BstC8I	GCNNGC	2 cut(s)	7, 255
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	231, 267
BstKTI	GATC	1 cut(s)	420
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	417
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	231, 267
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	7, 255
CviAII	CATG	1 cut(s)	443
CviJI	RGCY	4 cut(s)	5, 101, 230, 326
CviKI_1	RGCY	4 cut(s)	5, 101, 230, 326
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	446
FaiI	YATR	5 cut(s)	141, 329, 389, 407, 444
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	218, 254
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	1 cut(s)	454
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	446
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	109, 265
Hpy188I	TCNGA	3 cut(s)	46, 137, 341
Hpy8I	GTNNAC	2 cut(s)	109, 265
HpyCH4III	ACNGT	2 cut(s)	28, 61
HpyCH4V	TGCA	4 cut(s)	168, 274, 380, 405
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	446
Kzo9I	GATC	1 cut(s)	417
LpnPI	CCDG	7 cut(s)	23, 83, 110, 134, 248, 284, 366
MaeI	CTAG	1 cut(s)	454
MaeIII	GTNAC	2 cut(s)	55, 61
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	2 cut(s)	25, 331
MhlI	GDGCHC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	3 cut(s)	136, 219, 404
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	2 cut(s)	347, 447
MslI	CAYNNNNRTG	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	1 cut(s)	446
NspI	RCATGY	1 cut(s)	446
PctI	GAATGC	1 cut(s)	274
PflFI	GACNNNGTC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PsyI	GACNNNGTC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	347, 447
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	3 cut(s)	147, 385, 436
SfcI	CTRYAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	173
SsiI	CCGC	2 cut(s)	196, 423
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	28, 61
TaqI	TCGA	1 cut(s)	35
TaqII	GACCGA	1 cut(s)	32
TauI	GCSGC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	347, 447
Tru9I	TTAA	2 cut(s)	347, 447
Tth111I	GACNNNGTC	1 cut(s)	40
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.