Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Reverse (-)

29255927 .. 29257249

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTTGGTTTTCGCAGTCGTCATCCGGAGGTGAAGTGGGCGCAAAGGGTGGATAAGGTTTTCCTTACCGTGCTTTTGCCTGATGCAAAGGACGCGAAGGTTAAGCTTGAACCCGATGGAACGTTCAGCTTCTCGGCTAGTGCTGGTGCGGAGAATCACCAGTATGAACTCAAACTGGATCTCTTTGATAAGGTTAATGTGGAGGAAAGCAAAATAAATGTTGGCGTGAGGAGTATCTTCTGTATTGTGGAGAAGGCGGAGCCAGAATGGTGGCCTAAGCTGTTGCGTGGAGATGGAAAGACACCGCATTATGTCAAAGTAGATTGGGACAAATGGGTGGACGAGGACGATGATACTGCTGCAGGATCAGGTCCCGGTGACATGGATTTGGGAGGGATGGATTTCTCGAAATTCGGTGGCATGGGAGGTGACGATATGGGAGGAATGGGTGACTTTGATGATAGTGATGAAGATCTAGATCTCTCAAAGGCAGAAGATGAGGCCGCCGAAGAGCAGGATGCTATTAAGGCCGGAGTTGATACTTCGGAAGAGAAAAAGGAAGCTACTACAAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

193

Amino Acids

21.13

Weight (kDa)

4.35

Isoelectric Point (pI)

23.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	9 - 85	4.3e-12	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	4 cut(s)	149, 257, 305, 504
AclI	AACGTT	1 cut(s)	122
AclWI	GGATC	2 cut(s)	186, 373
AcsI	RAATTY	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	110
AluBI	AGCT	4 cut(s)	106, 129, 280, 563
AluI	AGCT	4 cut(s)	106, 129, 280, 563
AlwI	GGATC	2 cut(s)	186, 373
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	3 cut(s)	272, 501, 528
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	371
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	5 cut(s)	43, 149, 389, 440, 461
AvaII	GGWCC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	3 cut(s)	110, 287, 391
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BcnI	CCSGG	1 cut(s)	375
BfaI	CTAG	2 cut(s)	138, 476
BfmI	CTRYAG	1 cut(s)	360
BglII	AGATCT	2 cut(s)	472, 478
BisI	GCNGC	2 cut(s)	360, 504
BlsI	GCNGC	2 cut(s)	361, 505
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	261, 373
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	73, 508
Bpu10I	CCTNAGC	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	375
BsaBI	GATNNNNATC	2 cut(s)	471, 477
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bse1I	ACTGG	2 cut(s)	160, 180
Bse8I	GATNNNNATC	2 cut(s)	471, 477
BseAI	TCCGGA	1 cut(s)	25
BseGI	GGATG	3 cut(s)	22, 402, 523
BseJI	GATNNNNATC	2 cut(s)	471, 477
BseNI	ACTGG	2 cut(s)	160, 180
BseRI	GAGGAG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	274, 503, 530
BsiSI	CCGG	3 cut(s)	26, 375, 531
BslFI	GGGAC	2 cut(s)	341, 357
BsmFI	GGGAC	2 cut(s)	341, 357
BsnI	GGCC	3 cut(s)	274, 503, 530
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	4 cut(s)	178, 365, 472, 478
BspACI	CCGC	4 cut(s)	149, 257, 305, 504
BspANI	GGCC	3 cut(s)	274, 503, 530
BspEI	TCCGGA	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	261, 373
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	186, 373
BspQI	GCTCTTC	1 cut(s)	504
BsrI	ACTGG	2 cut(s)	160, 180
BssMI	GATC	4 cut(s)	178, 365, 472, 478
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	2 cut(s)	504, 543
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	3 cut(s)	22, 402, 523
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	4 cut(s)	181, 368, 475, 481
BstMBI	GATC	4 cut(s)	178, 365, 472, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 527
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	3 cut(s)	178, 472, 478
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstYI	RGATCY	3 cut(s)	178, 472, 478
BsuRI	GGCC	3 cut(s)	274, 503, 530
BtsCI	GGATG	3 cut(s)	22, 402, 523
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	101
CviAII	CATG	2 cut(s)	382, 421
CviJI	RGCY	9 cut(s)	106, 129, 137, 262, 274, 280, 503, 530, 563
CviKI_1	RGCY	9 cut(s)	106, 129, 137, 262, 274, 280, 503, 530, 563
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	4 cut(s)	180, 367, 474, 480
DpnII	GATC	4 cut(s)	178, 365, 472, 478
Eam1104I	CTCTTC	2 cut(s)	504, 543
EarI	CTCTTC	2 cut(s)	504, 543
EciI	GGCGGA	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	371
FaeI	CATG	2 cut(s)	385, 424
FaiI	YATR	6 cut(s)	165, 312, 383, 422, 437, 577
FaqI	GGGAC	2 cut(s)	341, 357
FatI	CATG	2 cut(s)	381, 420
Fnu4HI	GCNGC	2 cut(s)	360, 504
FokI	GGATG	3 cut(s)	9, 409, 530
Fsp4HI	GCNGC	2 cut(s)	360, 504
FspBI	CTAG	2 cut(s)	138, 476
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	360, 504
HaeIII	GGCC	3 cut(s)	274, 503, 530
HapII	CCGG	3 cut(s)	26, 375, 531
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	385, 424
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	3 cut(s)	26, 375, 531
HphI	GGTGA	5 cut(s)	43, 149, 389, 440, 461
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	547
Hpy188III	TCNNGA	3 cut(s)	26, 406, 476
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	91, 247
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	86, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 527
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	385, 424
HspAI	GCGC	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	178, 365, 472, 478
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	73, 508
MaeI	CTAG	2 cut(s)	138, 476
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	3 cut(s)	377, 428, 449
MalI	GATC	4 cut(s)	180, 367, 474, 480
MboI	GATC	4 cut(s)	178, 365, 472, 478
MboII	GAAGA	5 cut(s)	229, 482, 506, 521, 560
MflI	RGATCY	3 cut(s)	178, 472, 478
MluCI	AATT	1 cut(s)	410
MnlI	CCTC	8 cut(s)	22, 196, 222, 337, 386, 419, 434, 493
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	3 cut(s)	102, 195, 525
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	3 cut(s)	26, 375, 531
MspR9I	CCNGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	92, 527
NciI	CCSGG	1 cut(s)	375
NdeII	GATC	4 cut(s)	178, 365, 472, 478
NlaIII	CATG	2 cut(s)	385, 424
NlaIV	GGNNCC	2 cut(s)	261, 373
NmeAIII	GCCGAG	1 cut(s)	113
NmuCI	GTSAC	3 cut(s)	377, 428, 449
PciSI	GCTCTTC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	361, 505
PpuMI	RGGWCCY	1 cut(s)	371
Psp1406I	AACGTT	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	261, 373
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	3 cut(s)	178, 472, 478
RseI	CAYNNNNRTG	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	102, 195, 525
SatI	GCNGC	2 cut(s)	360, 504
Sau3AI	GATC	4 cut(s)	178, 365, 472, 478
Sau96I	GGNCC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	375
SfaNI	GCATC	2 cut(s)	73, 508
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	4 cut(s)	149, 257, 305, 504
SspMI	CTAG	2 cut(s)	138, 476
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	1 cut(s)	407
TasI	AATT	1 cut(s)	410
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	102, 195, 525
Tru9I	TTAA	3 cut(s)	102, 195, 525
TseFI	GTSAC	3 cut(s)	377, 428, 449
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	3 cut(s)	377, 428, 449
TspDTI	ATGAA	2 cut(s)	180, 483
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	410
XbaI	TCTAGA	1 cut(s)	475
XspI	CTAG	2 cut(s)	138, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.