Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012400

Physical Location & Seq

Genomic Coordinates Forward (+)

29517403 .. 29517687

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCTTTTCAGAGGGAATTTCAAGGATTTCAAGGGGTCCCAAGTGTGGAGGACGATCAAGGATGGGAACCGCAGCAAGATCGATCTGAATTGCGCGTTTTGCACCTGCAAGGACACTTGGGATTTGCATTCTGCAATCTGCTTGAGGCGGGTTTTCGGGTACCATGACGACGGCGAGCTGGTTGTTCGAGCTTATGTCTGTGAAAATGGACATGTCTCTGGGGCTTGGACCGACCTGCCATTGTACTCTAGATGGAAATTGCTCTCTAATGAAGGCATGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010228 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048573 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051606 GO:0051716 GO:0061458 GO:0065007 GO:0070647 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071704 GO:0099402 GO:0104004 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

95

Amino Acids

10.93

Weight (kDa)

8.32

Isoelectric Point (pI)

22.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02440
fragaria_vesca	FvH4_2g25611
malus_domestica	MD03G1287400.v1.1 MD05G1102200.v1.1 MD05G1102300.v1.1 MD11G1310800.v1.1
prunus_persica	Prupe.8G260500_v2.0.a1
pyrus_communis	pycom03g22750 pycom11g27150 pycom11g27180
rosa_chinensis	RchiOBHm_Chr6g0293871
rosa_laevigata	RLG00000011916
rosa_multiflora	Rmu_co8266553.1_g000001 Rmu_ssc0000470.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261840
rosa_samantha	Rh6AG352100 Rh6BG358900 Rh6CG366300
rosa_wichuraiana	Rw6G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	113
Acc36I	ACCTGC	2 cut(s)	113, 243
Acc65I	GGTACC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	159
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	70, 148
AcsI	RAATTY	1 cut(s)	16
AfaI	GTAC	3 cut(s)	161, 245, 281
AfiI	CCNNNNNNNGG	1 cut(s)	45
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	22, 31
AluBI	AGCT	2 cut(s)	178, 191
AluI	AGCT	2 cut(s)	178, 191
Alw26I	GTCTC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	16
Asp718I	GGTACC	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	36, 228
AvaII	GGWCC	2 cut(s)	36, 228
BanI	GGYRCC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	2 cut(s)	56, 246
BceAI	ACGGC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	249
BfuAI	ACCTGC	2 cut(s)	113, 243
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme18I	GGWCC	2 cut(s)	36, 228
BmgT120I	GGNCC	2 cut(s)	36, 228
BmiI	GGNNCC	4 cut(s)	37, 38, 68, 161
BpuEI	CTTGAG	1 cut(s)	163
Bsa29I	ATCGAT	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	81
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	159
BshVI	ATCGAT	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	54, 78, 82
BspACI	CCGC	2 cut(s)	70, 148
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	4 cut(s)	37, 38, 68, 161
BspMI	ACCTGC	2 cut(s)	113, 243
BspT107I	GGYRCC	1 cut(s)	159
BssMI	GATC	3 cut(s)	54, 78, 82
BstC8I	GCNNGC	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	3 cut(s)	57, 81, 85
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	3 cut(s)	54, 78, 82
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNSI	RCATGY	2 cut(s)	215, 280
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	84
Bsu15I	ATCGAT	1 cut(s)	81
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	67
BveI	ACCTGC	2 cut(s)	113, 243
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	36, 228
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	3 cut(s)	160, 244, 280
CviAII	CATG	3 cut(s)	164, 212, 277
CviJI	RGCY	3 cut(s)	178, 191, 224
CviKI_1	RGCY	3 cut(s)	178, 191, 224
CviQI	GTAC	3 cut(s)	160, 244, 280
DpnI	GATC	3 cut(s)	56, 80, 84
DpnII	GATC	3 cut(s)	54, 78, 82
Eco47I	GGWCC	2 cut(s)	36, 228
EcoO109I	RGGNCCY	1 cut(s)	36
FaeI	CATG	3 cut(s)	167, 215, 280
FaiI	YATR	4 cut(s)	165, 195, 213, 278
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	163, 211, 276
FauI	CCCGC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	167, 215, 280
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	11, 87
Hpy188III	TCNNGA	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	266
HpyCH4V	TGCA	4 cut(s)	102, 108, 127, 134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	167, 215, 280
HspAI	GCGC	1 cut(s)	93
KflI	GGGWCCC	1 cut(s)	36
KpnI	GGTACC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	54, 78, 82
LpnPI	CCDG	4 cut(s)	118, 164, 204, 248
Lsp1109I	GCAGC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	249
MalI	GATC	3 cut(s)	56, 80, 84
MboI	GATC	3 cut(s)	54, 78, 82
MluCI	AATT	3 cut(s)	16, 88, 257
MnlI	CCTC	3 cut(s)	5, 42, 138
Mva1269I	GAATGC	1 cut(s)	127
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	3 cut(s)	54, 78, 82
NlaIII	CATG	3 cut(s)	167, 215, 280
NlaIV	GGNNCC	4 cut(s)	37, 38, 68, 161
NspI	RCATGY	2 cut(s)	215, 280
PaqCI	CACCTGC	1 cut(s)	113
PciI	ACATGT	1 cut(s)	211
PctI	GAATGC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	36
PscI	ACATGT	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	36
PspN4I	GGNNCC	4 cut(s)	37, 38, 68, 161
PspPI	GGNCC	2 cut(s)	36, 228
PspPPI	RGGWCCY	1 cut(s)	36
RsaI	GTAC	3 cut(s)	161, 245, 281
RsaNI	GTAC	3 cut(s)	160, 244, 280
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	3 cut(s)	54, 78, 82
Sau96I	GGNCC	2 cut(s)	36, 228
SetI	ASST	4 cut(s)	107, 180, 193, 237
SinI	GGWCC	2 cut(s)	36, 228
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	3 cut(s)	16, 88, 257
SsiI	CCGC	2 cut(s)	70, 148
SspMI	CTAG	1 cut(s)	249
TaqI	TCGA	2 cut(s)	81, 187
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	3 cut(s)	16, 88, 257
TatI	WGTACW	2 cut(s)	243, 279
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	285
VpaK11BI	GGWCC	2 cut(s)	36, 228
XapI	RAATTY	1 cut(s)	16
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	2 cut(s)	215, 280
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.