pycom12g01450

Permuted single zf-CXXC unit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0002894
Physical Location & Seq
Forward (+)
1198487 .. 1200947
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01450.5

Sequence Viewer

Length: 1077 bp
ATGGATTCCTTGGACTGGGAAGCCGTAAGATGTGCAGATGTTAATGAGATTGCCCAAACCATCAAAGAGCGGGGGATGAATAATATGCTTGCAGAACGAATCAAGGATTTCCTTAACCGACTGGTCAGAGAGCATGGTAGTGTTGATCTTGAATGGTTGAGGGACGTTCCACCTGACCAAGCAAAAGAGTATCTGCTGAGCTTTCGCGGATTGGGGTTGAAAAGCGTGGAATGTGTGCGGCTTTTGACACTGCACCATCTTGCTTTTCCAGTGGACACAAATGTTGGACGTATAGCTGTACGGCTTGGATGGGTACCCCTTCAGCCCCTGCCTGAGTCATTGCAGTTGCATCTTCTTGAATTGTACCCAGTGCTGGAATCCATACAAAAGTATTTGTGGCCACGACTGTGCAAGCTTGACCAAAGAACATTGTACGAGCTGCATTACCAAATGATAACATTTGGAAAGGTCTTCTGCACGAAAAGCAAGCCGAATTGTAATGCATGCCCGCTGAGAACAGATTGTAGGCATTTTGCGAGTGCATTTGCGAGTGCAAGGCTTGCCCTGCCGGGACCAGAGGAGCAAAGCATAGTGAGTGCAACTGAAGACAGAACTACCCATCCAAACCCTGCTGGTGTCAACAATATAATGCCCTTGCCCCTCCCTCAGGGAACATACCAGCAATTGGAAGCAAGCCAGAAATCAGAAGTAAAATCTACATTTGGTCATTGTGAACCTACAACATGCCAGCAATTGGAAGCAAGCCAGATATCTGAAGCAAAATCTGCAGTTGGTAATTGTGAACCTATTATTGAAGAACCAGCATCACCAGAGCCAGTGTGTACACAGATATCAGAAGACATTGAGGACTTCTGTGATGGTCCTGACGAAATTCCGACTATTAAACTTAACATTGAAGAGTTCACTCAGACTTTGCAAAATTATATGGAAAAAAACATGGAGCTTCAAGAAGGTGAAATGTCAAAAGCCTTAGTCTCTCTAACACCAGAAGCTGCATCATTACCAACTCCCAAGCTTAAGAATGTGAGCCGACTGCGAACTGAGCACCAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Perm-CXXC RRM_DME

Protein Analysis

359

Amino Acids

40.36

Weight (kDa)

5.14

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 313
AccB7I CCANNNNNTGG 2 cut(s) 685, 754
AccBSI CCGCTC 1 cut(s) 70
AccII CGCG 1 cut(s) 207
AciI CCGC 4 cut(s) 70, 207, 238, 509
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 1 cut(s) 891
AcuI CTGAAG 3 cut(s) 305, 624, 795
AfaI GTAC 5 cut(s) 300, 315, 365, 434, 844
AfiI CCNNNNNNNGG 5 cut(s) 15, 373, 667, 685, 754
AflII CTTAAG 1 cut(s) 1037
AgsI TTSAA 6 cut(s) 152, 220, 359, 815, 917, 968
AleI CACNNNNGTG 1 cut(s) 406
AloI GAACNNNNNNTCC 2 cut(s) 604, 636
AluBI AGCT 7 cut(s) 201, 296, 415, 439, 964, 1013, 1036
AluI AGCT 7 cut(s) 201, 296, 415, 439, 964, 1013, 1036
Alw21I GWGCWC 1 cut(s) 1068
Alw26I GTCTC 1 cut(s) 1000
AlwNI CAGNNNCTG 2 cut(s) 328, 1013
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 439, 1013
ApoI RAATTY 1 cut(s) 891
Asp718I GGTACC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 572, 881
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 2 cut(s) 819, 986
AvaII GGWCC 2 cut(s) 572, 881
AxyI CCTNAGG 1 cut(s) 666
BalI TGGCCA 1 cut(s) 400
BanI GGYRCC 1 cut(s) 313
BbsI GAAGAC 3 cut(s) 463, 612, 864
Bbv12I GWGCWC 1 cut(s) 1068
BbvI GCAGC 2 cut(s) 426, 1000
BccI CCATC 5 cut(s) 68, 264, 303, 627, 872
BceAI ACGGC 2 cut(s) 8, 317
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 1000
BfmI CTRYAG 1 cut(s) 786
BfrI CTTAAG 1 cut(s) 1037
BisI GCNGC 3 cut(s) 239, 440, 1014
BlpI GCTNAGC 1 cut(s) 197
BlsI GCNGC 3 cut(s) 240, 441, 1015
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 2 cut(s) 572, 881
BmgT120I GGNCC 2 cut(s) 572, 881
BmiI GGNNCC 2 cut(s) 315, 573
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 2 cut(s) 25, 362
BmsI GCATC 3 cut(s) 358, 833, 1025
BmuI ACTGGG 2 cut(s) 25, 362
BpiI GAAGAC 3 cut(s) 463, 612, 864
Bpu1102I GCTNAGC 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 5 cut(s) 15, 373, 667, 685, 754
Bse1I ACTGG 5 cut(s) 20, 126, 269, 368, 836
Bse21I CCTNAGG 1 cut(s) 666
Bse3DI GCAATG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 3 cut(s) 81, 314, 619
BseLI CCNNNNNNNGG 5 cut(s) 15, 373, 667, 685, 754
BseMI GCAATG 1 cut(s) 338
BseMII CTCAG 6 cut(s) 188, 324, 503, 680, 941, 1053
BseNI ACTGG 5 cut(s) 20, 126, 269, 368, 836
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 2 cut(s) 426, 1000
BsgI GTGCAG 3 cut(s) 54, 236, 460
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 400
BshNI GGYRCC 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 1068
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 2 cut(s) 176, 585
BslI CCNNNNNNNGG 5 cut(s) 15, 373, 667, 685, 754
BsmAI GTCTC 1 cut(s) 1000
BsmFI GGGAC 2 cut(s) 176, 585
BsnI GGCC 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 1068
Bsp1407I TGTACA 1 cut(s) 842
Bsp143I GATC 1 cut(s) 145
Bsp1720I GCTNAGC 1 cut(s) 197
BspACI CCGC 4 cut(s) 70, 207, 238, 509
BspANI GGCC 1 cut(s) 400
BspCNI CTCAG 6 cut(s) 189, 325, 504, 679, 940, 1054
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 315, 573
BspMAI CTGCAG 1 cut(s) 790
BspT107I GGYRCC 1 cut(s) 313
BspTI CTTAAG 1 cut(s) 1037
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 842
BsrI ACTGG 5 cut(s) 20, 126, 269, 368, 836
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 408
Bst6I CTCTTC 1 cut(s) 912
BstAFI CTTAAG 1 cut(s) 1037
BstAPI GCANNNNNTGC 2 cut(s) 560, 785
BstAUI TGTACA 1 cut(s) 842
BstC8I GCNNGC 9 cut(s) 90, 413, 488, 505, 509, 561, 694, 749, 763
BstDEI CTNAG 7 cut(s) 197, 333, 512, 666, 927, 991, 1062
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 3 cut(s) 81, 314, 619
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 1000
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 5 cut(s) 483, 560, 565, 785, 1063
BstNSI RCATGY 2 cut(s) 507, 747
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 1 cut(s) 786
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 426, 1000
BstV2I GAAGAC 3 cut(s) 463, 612, 864
Bsu36I CCTNAGG 1 cut(s) 666
BsuRI GGCC 1 cut(s) 400
BtsCI GGATG 3 cut(s) 81, 314, 619
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 4 cut(s) 248, 276, 375, 843
Cac8I GCNNGC 9 cut(s) 90, 413, 488, 505, 509, 561, 694, 749, 763
CaiI CAGNNNCTG 2 cut(s) 328, 1013
Cfr13I GGNCC 2 cut(s) 572, 881
Csp6I GTAC 5 cut(s) 299, 314, 364, 433, 843
CviAII CATG 4 cut(s) 134, 504, 744, 958
CviQI GTAC 5 cut(s) 299, 314, 364, 433, 843
DdeI CTNAG 7 cut(s) 197, 333, 512, 666, 927, 991, 1062
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Eco130I CCWWGG 1 cut(s) 9
Eco32I GATATC 2 cut(s) 771, 852
Eco47I GGWCC 2 cut(s) 572, 881
Eco57I CTGAAG 3 cut(s) 305, 624, 795
Eco81I CCTNAGG 1 cut(s) 666
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoRV GATATC 2 cut(s) 771, 852
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 4 cut(s) 137, 507, 747, 961
FaqI GGGAC 2 cut(s) 176, 585
FatI CATG 4 cut(s) 133, 503, 743, 957
FauI CCCGC 2 cut(s) 63, 516
Fnu4HI GCNGC 3 cut(s) 239, 440, 1014
FokI GGATG 3 cut(s) 88, 321, 606
Fsp4HI GCNGC 3 cut(s) 239, 440, 1014
GluI GCNGC 3 cut(s) 239, 440, 1014
HaeIII GGCC 1 cut(s) 400
HapII CCGG 1 cut(s) 569
Hin1II CATG 4 cut(s) 137, 507, 747, 961
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 2 cut(s) 413, 1034
HinfI GANTC 4 cut(s) 5, 99, 335, 377
HpaII CCGG 1 cut(s) 569
HphI GGTGA 2 cut(s) 819, 986
Hpy166II GTNNAC 7 cut(s) 274, 640, 734, 803, 843, 845, 924
Hpy188I TCNGA 6 cut(s) 128, 706, 775, 856, 897, 930
Hpy188III TCNNGA 4 cut(s) 149, 356, 884, 968
Hpy8I GTNNAC 7 cut(s) 274, 640, 734, 803, 843, 845, 924
HpyAV CCTTC 2 cut(s) 329, 965
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 2 cut(s) 165, 289
HpyF10VI GCNNNNNNNGC 5 cut(s) 483, 560, 565, 785, 1063
HpyF3I CTNAG 7 cut(s) 197, 333, 512, 666, 927, 991, 1062
HpySE526I ACGT 2 cut(s) 165, 289
Hsp92II CATG 4 cut(s) 137, 507, 747, 961
KpnI GGTACC 1 cut(s) 317
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 2 cut(s) 580, 961
Lsp1109I GCAGC 2 cut(s) 426, 1000
LweI GCATC 3 cut(s) 358, 833, 1025
MaeII ACGT 2 cut(s) 165, 289
MalI GATC 1 cut(s) 147
MbiI CCGCTC 1 cut(s) 70
MboI GATC 1 cut(s) 145
MboII GAAGA 6 cut(s) 344, 463, 617, 827, 869, 929
MfeI CAATTG 2 cut(s) 683, 752
MhlI GDGCHC 1 cut(s) 1068
MlsI TGGCCA 1 cut(s) 400
MluCI AATT 7 cut(s) 359, 493, 683, 752, 796, 891, 940
MluNI TGGCCA 1 cut(s) 400
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 2 cut(s) 265, 920
MnlI CCTC 5 cut(s) 153, 571, 671, 675, 859
Mox20I TGGCCA 1 cut(s) 400
Mph1103I ATGCAT 1 cut(s) 505
MscI TGGCCA 1 cut(s) 400
MseI TTAA 5 cut(s) 42, 114, 903, 909, 1038
MslI CAYNNNNRTG 2 cut(s) 138, 406
Msp20I TGGCCA 1 cut(s) 400
MspA1I CMGCKG 1 cut(s) 511
MspCI CTTAAG 1 cut(s) 1037
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 1 cut(s) 570
MunI CAATTG 2 cut(s) 683, 752
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 5 cut(s) 483, 560, 565, 785, 1063
NciI CCSGG 1 cut(s) 570
NdeII GATC 1 cut(s) 145
NlaIII CATG 4 cut(s) 137, 507, 747, 961
NlaIV GGNNCC 2 cut(s) 315, 573
NsiI ATGCAT 1 cut(s) 505
NspI RCATGY 2 cut(s) 507, 747
OliI CACNNNNGTG 1 cut(s) 406
PaeI GCATGC 1 cut(s) 507
PfeI GAWTC 3 cut(s) 5, 99, 377
PflMI CCANNNNNTGG 2 cut(s) 685, 754
PkrI GCNGC 3 cut(s) 240, 441, 1015
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PspN4I GGNNCC 2 cut(s) 315, 573
PspPI GGNCC 2 cut(s) 572, 881
PstI CTGCAG 1 cut(s) 790
PstNI CAGNNNCTG 2 cut(s) 328, 1013
RsaI GTAC 5 cut(s) 300, 315, 365, 434, 844
RsaNI GTAC 5 cut(s) 299, 314, 364, 433, 843
RseI CAYNNNNRTG 2 cut(s) 138, 406
SaqAI TTAA 5 cut(s) 42, 114, 903, 909, 1038
SatI GCNGC 3 cut(s) 239, 440, 1014
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 572, 881
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 1068
SfaNI GCATC 3 cut(s) 358, 833, 1025
SfcI CTRYAG 1 cut(s) 786
SinI GGWCC 2 cut(s) 572, 881
SmiMI CAYNNNNRTG 2 cut(s) 138, 406
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
SphI GCATGC 1 cut(s) 507
Sse9I AATT 7 cut(s) 359, 493, 683, 752, 796, 891, 940
SsiI CCGC 4 cut(s) 70, 207, 238, 509
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 2 cut(s) 168, 292
TasI AATT 7 cut(s) 359, 493, 683, 752, 796, 891, 940
TatI WGTACW 1 cut(s) 842
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 3 cut(s) 5, 99, 377
Tru1I TTAA 5 cut(s) 42, 114, 903, 909, 1038
Tru9I TTAA 5 cut(s) 42, 114, 903, 909, 1038
TscAI CASTG 4 cut(s) 255, 276, 375, 843
TseI GCWGC 2 cut(s) 439, 1013
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 4 cut(s) 255, 276, 375, 843
Van91I CCANNNNNTGG 2 cut(s) 685, 754
Vha464I CTTAAG 1 cut(s) 1037
VpaK11BI GGWCC 2 cut(s) 572, 881
XagI CCTNNNNNAGG 1 cut(s) 665
XapI RAATTY 1 cut(s) 891
XceI RCATGY 2 cut(s) 507, 747
Zsp2I ATGCAT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.