Rh3CG197900

Permuted single zf-CXXC unit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002894
Physical Location & Seq
Forward (+)
17680548 .. 17683807
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG197900.1

Sequence Viewer

Length: 1158 bp
ATGATAACATTTGGAAAGGTCTTCTGCACAAAAAGCAAACCGAATTGCAATGCATGTCCAATGAGAGGAGAATGTAGGCATTTTGCAAGTGCATTTGCAAGTGCAAGACTTGCCTTGCCAGGGCCCGAGGAGAAAAGTTTAGTGAGCGCAACTGAAGACAGAAATACCTATCAAAACCCTGGTGAGATCAACAATGGAATGCCTTTGCCTCTCCCTCTCCCTCATCCTCACCGAACAGAACAGTTGGAAGCAAACCAGCAACTTGCAGCAAGCCAACAATCAGAACCAAAGTCTACCCTAGGTTATTGTGAACCAATTATTGAAGAACCAGCTACGCCAGAGCCAGAGTGCACACAGATAGTAGAGGACATTGAGGACTTCTATGAGGACCCAGATGAAATTCCTACAATTAAACTTAACATGGAACAGTTCACTCAGAACTTGCAAAATTATATGCAACAAAACATGGAACTTCAACAAGGAGAAATGTCAAAGGCTTTAGTTGCTCTAACACCAGATGCTGCATCTCTTCCTACACCAAAGCTTAAGAATGTGAGCCGACTACGAACTGAGCACCAAGTCTATGAACTTCCTGATTCACACCCTCTTCTAGATCGGTTGGGGTTGGATAAGCGAGAACCTGATGATCCATGCAATTACCTTTTGGCCATTTGGACACCAGGTGAAACAGCAAACTCCATTCAACCACCAGAGAATAGGTGTAGTTCTCAAGAATTTGGCAAATTGTGTGATGATAAGGAATGTTTCCAATGCAATAGTGCACGGGAAGCATATTCACAAACAGTTCGAGGGACTCTCTTGATACCATGCCGAACAGCAATGAGAGGGAGCTTCCCACTTAACGGCACCTACTTTCAAGTTAATGAGGTGTTTGCTGATCATGATTCAAGCCTTGAGCCTCTTGATGTTCCAAGAGGCTGGTTGTGGAATCTGAATAGGAGGACTGTGTACTTTGGAACCTCAATACCAACAATATTCAAAGGGTTAACAACACCAGAAATTCAACATTGCTTTTGGAGAGGATTTGTGTGCGTGAGGGGGTTTGATCAGAAATCAAGGGGTCCGCGTCCTTTAATGGCCCGGTTGCACTTCCCAGCCAGCAGGTTGGCCAAACCAAAAGACAAGAAAGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Perm-CXXC RRM_DME

Protein Analysis

385

Amino Acids

43.55

Weight (kDa)

5.45

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Perm-CXXC PF15629 237 - 268 4.2e-14 Permuted single zf-CXXC unit
RRM_DME PF15628 271 - 371 2.1e-52 RRM in Demeter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1113
AccB1I GGYRCC 1 cut(s) 866
AccI GTMKAC 1 cut(s) 293
AccII CGCG 1 cut(s) 1087
AciI CCGC 1 cut(s) 1085
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 2 cut(s) 666, 1128
AcsI RAATTY 3 cut(s) 399, 734, 1020
AcuI CTGAAG 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 1 cut(s) 971
AfiI CCNNNNNNNGG 3 cut(s) 65, 120, 863
AflII CTTAAG 1 cut(s) 545
AgsI TTSAA 7 cut(s) 323, 476, 704, 878, 909, 1000, 1025
AjnI CCWGG 3 cut(s) 118, 178, 679
AluBI AGCT 3 cut(s) 332, 544, 852
AluI AGCT 3 cut(s) 332, 544, 852
Alw21I GWGCWC 3 cut(s) 353, 576, 784
Alw44I GTGCAC 2 cut(s) 349, 780
AlwI GGATC 1 cut(s) 641
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 4 cut(s) 122, 666, 1098, 1128
ApaI GGGCCC 1 cut(s) 126
ApaLI GTGCAC 2 cut(s) 349, 780
ApeKI GCWGC 2 cut(s) 266, 521
ApoI RAATTY 3 cut(s) 399, 734, 1020
AspA2I CCTAGG 1 cut(s) 298
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 5 cut(s) 122, 123, 388, 1082, 1099
AsuC2I CCSGG 1 cut(s) 1102
AsuHPI GGTGA 3 cut(s) 194, 221, 695
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 2 cut(s) 388, 1082
AvrII CCTAGG 1 cut(s) 298
BaeGI GKGCMC 3 cut(s) 126, 353, 784
BalI TGGCCA 2 cut(s) 668, 1130
BanI GGYRCC 1 cut(s) 866
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 13, 162
Bbv12I GWGCWC 3 cut(s) 353, 576, 784
BbvI GCAGC 2 cut(s) 278, 508
BceAI ACGGC 1 cut(s) 880
BciT130I CCWGG 3 cut(s) 120, 180, 681
BclI TGATCA 2 cut(s) 898, 1066
BcnI CCSGG 1 cut(s) 1102
BfaI CTAG 2 cut(s) 299, 611
BfrI CTTAAG 1 cut(s) 545
BfuAI ACCTGC 1 cut(s) 1113
BisI GCNGC 2 cut(s) 267, 522
BlnI CCTAGG 1 cut(s) 298
BlsI GCNGC 2 cut(s) 268, 523
Bme1390I CCNGG 4 cut(s) 120, 180, 681, 1102
Bme18I GGWCC 2 cut(s) 388, 1082
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 5 cut(s) 122, 123, 388, 1082, 1099
BmiI GGNNCC 5 cut(s) 124, 390, 868, 979, 1083
BmrFI CCNGG 4 cut(s) 120, 180, 681, 1102
BmsI GCATC 2 cut(s) 508, 533
BpiI GAAGAC 2 cut(s) 13, 162
BplI GAGNNNNNCTC 2 cut(s) 801, 833
BpuEI CTTGAG 2 cut(s) 714, 935
BpuMI CCSGG 1 cut(s) 1102
BsaJI CCNNGG 4 cut(s) 119, 126, 178, 298
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 120, 863
Bse3DI GCAATG 3 cut(s) 55, 846, 1027
BseBI CCWGG 3 cut(s) 120, 180, 681
BseDI CCNNGG 4 cut(s) 119, 126, 178, 298
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 3 cut(s) 65, 120, 863
BseMI GCAATG 3 cut(s) 55, 846, 1027
BseMII CTCAG 2 cut(s) 449, 561
BseRI GAGGAG 2 cut(s) 81, 143
BseSI GKGCMC 3 cut(s) 126, 353, 784
BseXI GCAGC 2 cut(s) 278, 508
BseYI CCCAGC 1 cut(s) 1114
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 1087
BshFI GGCC 4 cut(s) 124, 668, 1100, 1130
BshNI GGYRCC 1 cut(s) 866
BsiHKAI GWGCWC 3 cut(s) 353, 576, 784
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 1 cut(s) 1102
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 3 cut(s) 65, 120, 863
BsmFI GGGAC 1 cut(s) 826
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 4 cut(s) 124, 668, 1100, 1130
BsoBI CYCGRG 1 cut(s) 125
Bsp120I GGGCCC 1 cut(s) 122
Bsp1286I GDGCHC 4 cut(s) 126, 353, 576, 784
Bsp143I GATC 5 cut(s) 186, 613, 646, 898, 1066
BspACI CCGC 1 cut(s) 1085
BspANI GGCC 4 cut(s) 124, 668, 1100, 1130
BspCNI CTCAG 2 cut(s) 448, 562
BspFNI CGCG 1 cut(s) 1087
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 5 cut(s) 124, 390, 868, 979, 1083
BspMI ACCTGC 1 cut(s) 1113
BspPI GGATC 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 866
BspTI CTTAAG 1 cut(s) 545
BsrDI GCAATG 3 cut(s) 55, 846, 1027
BssECI CCNNGG 4 cut(s) 119, 126, 178, 298
BssMI GATC 5 cut(s) 186, 613, 646, 898, 1066
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 3 cut(s) 120, 180, 681
Bst4CI ACNGT 4 cut(s) 243, 429, 805, 967
Bst6I CTCTTC 2 cut(s) 534, 612
BstAFI CTTAAG 1 cut(s) 545
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 271, 1120
BstDEI CTNAG 2 cut(s) 435, 570
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 1087
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 5 cut(s) 189, 616, 649, 901, 1069
BstMBI GATC 5 cut(s) 186, 613, 646, 898, 1066
BstMWI GCNNNNNNNGC 4 cut(s) 33, 110, 503, 788
BstNI CCWGG 3 cut(s) 120, 180, 681
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 4 cut(s) 118, 178, 679, 1100
BstSLI GKGCMC 3 cut(s) 126, 353, 784
BstUI CGCG 1 cut(s) 1087
BstV1I GCAGC 2 cut(s) 278, 508
BstV2I GAAGAC 2 cut(s) 13, 162
BstXI CCANNNNNNTGG 2 cut(s) 939, 1126
BsuRI GGCC 4 cut(s) 124, 668, 1100, 1130
BtsCI GGATG 1 cut(s) 223
BveI ACCTGC 1 cut(s) 1113
Cac8I GCNNGC 2 cut(s) 271, 1120
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 1 cut(s) 901
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 5 cut(s) 122, 123, 388, 1082, 1099
CseI GACGC 1 cut(s) 1076
CsiI ACCWGGT 1 cut(s) 679
Csp6I GTAC 1 cut(s) 970
CviAII CATG 6 cut(s) 54, 421, 466, 651, 828, 902
CviQI GTAC 1 cut(s) 970
DdeI CTNAG 2 cut(s) 435, 570
DpnI GATC 5 cut(s) 188, 615, 648, 900, 1068
DpnII GATC 5 cut(s) 186, 613, 646, 898, 1066
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 2 cut(s) 666, 1128
Eam1104I CTCTTC 2 cut(s) 534, 612
EarI CTCTTC 2 cut(s) 534, 612
Eco130I CCWWGG 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 2 cut(s) 388, 1082
Eco57I CTGAAG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 125
EcoO109I RGGNCCY 2 cut(s) 122, 388
EcoRII CCWGG 3 cut(s) 118, 178, 679
EcoT14I CCWWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 6 cut(s) 57, 424, 469, 654, 831, 905
FaqI GGGAC 1 cut(s) 826
FatI CATG 6 cut(s) 53, 420, 465, 650, 827, 901
FbaI TGATCA 2 cut(s) 898, 1066
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 2 cut(s) 267, 522
FokI GGATG 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 267, 522
FspBI CTAG 2 cut(s) 299, 611
GlaI GCGC 1 cut(s) 148
GluI GCNGC 2 cut(s) 267, 522
GsaI CCCAGC 1 cut(s) 1118
HaeIII GGCC 4 cut(s) 124, 668, 1100, 1130
HapII CCGG 1 cut(s) 1102
HgaI GACGC 1 cut(s) 1076
HhaI GCGC 1 cut(s) 149
Hin1II CATG 6 cut(s) 57, 424, 469, 654, 831, 905
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 1008
HindII GTYRAC 1 cut(s) 1008
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 4 cut(s) 596, 814, 905, 949
HpaI GTTAAC 1 cut(s) 1008
HpaII CCGG 1 cut(s) 1102
HphI GGTGA 3 cut(s) 194, 221, 695
Hpy166II GTNNAC 7 cut(s) 294, 311, 351, 432, 782, 970, 1008
Hpy188I TCNGA 4 cut(s) 283, 438, 954, 1071
Hpy188III TCNNGA 6 cut(s) 593, 611, 731, 820, 902, 923
Hpy8I GTNNAC 7 cut(s) 294, 311, 351, 432, 782, 970, 1008
HpyCH4III ACNGT 4 cut(s) 243, 429, 805, 967
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 110, 503, 788
HpyF3I CTNAG 2 cut(s) 435, 570
Hsp92II CATG 6 cut(s) 57, 424, 469, 654, 831, 905
HspAI GCGC 1 cut(s) 147
Ksp22I TGATCA 2 cut(s) 898, 1066
KspAI GTTAAC 1 cut(s) 1008
Kzo9I GATC 5 cut(s) 186, 613, 646, 898, 1066
LmnI GCTCC 1 cut(s) 849
Lsp1109I GCAGC 2 cut(s) 278, 508
LweI GCATC 2 cut(s) 508, 533
MabI ACCWGGT 1 cut(s) 679
MaeI CTAG 2 cut(s) 299, 611
MalI GATC 5 cut(s) 188, 615, 648, 900, 1068
MboI GATC 5 cut(s) 186, 613, 646, 898, 1066
MboII GAAGA 5 cut(s) 13, 167, 335, 521, 599
MhlI GDGCHC 4 cut(s) 126, 353, 576, 784
MlsI TGGCCA 2 cut(s) 668, 1130
MluCI AATT 9 cut(s) 43, 315, 399, 408, 448, 655, 734, 743, 1020
MluNI TGGCCA 2 cut(s) 668, 1130
MlyI GAGTC 1 cut(s) 808
MmeI TCCRAC 2 cut(s) 225, 606
Mox20I TGGCCA 2 cut(s) 668, 1130
Mph1103I ATGCAT 1 cut(s) 55
MscI TGGCCA 2 cut(s) 668, 1130
MseI TTAA 7 cut(s) 411, 417, 546, 861, 882, 1007, 1094
Msp20I TGGCCA 2 cut(s) 668, 1130
MspCI CTTAAG 1 cut(s) 545
MspI CCGG 1 cut(s) 1102
MspR9I CCNGG 4 cut(s) 120, 180, 681, 1102
Mva1269I GAATGC 1 cut(s) 204
MvaI CCWGG 3 cut(s) 120, 180, 681
MvnI CGCG 1 cut(s) 1087
MwoI GCNNNNNNNGC 4 cut(s) 33, 110, 503, 788
NciI CCSGG 1 cut(s) 1102
NdeII GATC 5 cut(s) 186, 613, 646, 898, 1066
NlaIII CATG 6 cut(s) 57, 424, 469, 654, 831, 905
NlaIV GGNNCC 5 cut(s) 124, 390, 868, 979, 1083
NsiI ATGCAT 1 cut(s) 55
NspI RCATGY 1 cut(s) 57
PagI TCATGA 1 cut(s) 901
PctI GAATGC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 596, 905, 949
PkrI GCNGC 2 cut(s) 268, 523
PleI GAGTC 1 cut(s) 808
PpsI GAGTC 1 cut(s) 808
PpuMI RGGWCCY 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 3 cut(s) 118, 178, 679
PspFI CCCAGC 1 cut(s) 1114
PspGI CCWGG 3 cut(s) 118, 178, 679
PspN4I GGNNCC 5 cut(s) 124, 390, 868, 979, 1083
PspOMI GGGCCC 1 cut(s) 122
PspPI GGNCC 5 cut(s) 122, 123, 388, 1082, 1099
PspPPI RGGWCCY 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 521
RsaI GTAC 1 cut(s) 971
RsaNI GTAC 1 cut(s) 970
SaqAI TTAA 7 cut(s) 411, 417, 546, 861, 882, 1007, 1094
SatI GCNGC 2 cut(s) 267, 522
Sau3AI GATC 5 cut(s) 186, 613, 646, 898, 1066
Sau96I GGNCC 5 cut(s) 122, 123, 388, 1082, 1099
SchI GAGTC 1 cut(s) 808
ScrFI CCNGG 4 cut(s) 120, 180, 681, 1102
SduI GDGCHC 4 cut(s) 126, 353, 576, 784
SexAI ACCWGGT 1 cut(s) 679
SfaNI GCATC 2 cut(s) 508, 533
SinI GGWCC 2 cut(s) 388, 1082
SmlI CTYRAG 3 cut(s) 545, 729, 914
SmoI CTYRAG 3 cut(s) 545, 729, 914
Sse9I AATT 9 cut(s) 43, 315, 399, 408, 448, 655, 734, 743, 1020
SsiI CCGC 1 cut(s) 1085
SspI AATATT 1 cut(s) 996
SspMI CTAG 2 cut(s) 299, 611
StyD4I CCNGG 4 cut(s) 118, 178, 679, 1100
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 4 cut(s) 243, 429, 805, 967
TaqI TCGA 1 cut(s) 808
TasI AATT 9 cut(s) 43, 315, 399, 408, 448, 655, 734, 743, 1020
TatI WGTACW 1 cut(s) 969
TfiI GAWTC 3 cut(s) 596, 905, 949
Tru1I TTAA 7 cut(s) 411, 417, 546, 861, 882, 1007, 1094
Tru9I TTAA 7 cut(s) 411, 417, 546, 861, 882, 1007, 1094
TseI GCWGC 2 cut(s) 266, 521
TspDTI ATGAA 2 cut(s) 411, 600
Vha464I CTTAAG 1 cut(s) 545
VneI GTGCAC 2 cut(s) 349, 780
VpaK11BI GGWCC 2 cut(s) 388, 1082
XapI RAATTY 3 cut(s) 399, 734, 1020
XbaI TCTAGA 1 cut(s) 610
XceI RCATGY 1 cut(s) 57
XmaJI CCTAGG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 293
XspI CTAG 2 cut(s) 299, 611
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.