Permuted single zf-CXXC unit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G36490 |
| fragaria_vesca | FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_6g17860 |
| malus_domestica | MD12G1017600.v1.1 MD14G1015300.v1.1 |
| prunus_persica | Prupe.7G118000_v2.0.a1 Prupe.7G118000_v2.0.a1 Prupe.7G118000_v2.0.a1 Prupe.7G118000_v2.0.a1 Prupe.7G118000_v2.0.a1 |
| pyrus_communis | pycom12g01420 pycom12g01430 pycom12g01450 pycom14g01290 pycom14g01300 |
| rosa_chinensis | RchiOBHm_Chr3g0472091 |
| rosa_laevigata | RLG00000024104 |
| rosa_multiflora | Rmu_sc0002532.1_g000017 |
| rosa_roxburghii | Rroxscaffold_6G00409250 |
| rosa_rugosa | Rorug03G0122100 |
| rosa_samantha | Rh3AG174000 Rh3AG174100 Rh3BG199400 Rh3CG190400 Rh3CG190500 Rh3CG197800 Rh3CG197900 Rh3DG175100 |
| rosa_wichuraiana | Rw3G016670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1332 |
| Acc36I | ACCTGC | 2 cut(s) | 3313, 5118 |
| Acc65I | GGTACC | 1 cut(s) | 3856 |
| AccB1I | GGYRCC | 4 cut(s) | 191, 1766, 3856, 4871 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1694 |
| AccI | GTMKAC | 2 cut(s) | 2874, 4298 |
| AccII | CGCG | 3 cut(s) | 2238, 3635, 5092 |
| AciI | CCGC | 6 cut(s) | 258, 284, 413, 629, 3635, 5090 |
| AcoI | YGGCCR | 5 cut(s) | 370, 2093, 2640, 3941, 4671 |
| AcuI | CTGAAG | 4 cut(s) | 842, 2423, 3848, 4167 |
| AcyI | GRCGYC | 1 cut(s) | 2810 |
| AdeI | CACNNNGTG | 4 cut(s) | 1104, 2504, 2764, 4688 |
| AflII | CTTAAG | 2 cut(s) | 1307, 4550 |
| AflIII | ACRYGT | 1 cut(s) | 2819 |
| AhlI | ACTAGT | 1 cut(s) | 2585 |
| AjiI | CACGTC | 1 cut(s) | 1762 |
| AjnI | CCWGG | 8 cut(s) | 240, 552, 573, 874, 2991, 3454, 4171, 4684 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1839, 1871, 2006, 2038 |
| AleI | CACNNNNGTG | 1 cut(s) | 1760 |
| Alw21I | GWGCWC | 6 cut(s) | 1189, 1653, 3059, 4358, 4581, 4789 |
| Alw26I | GTCTC | 9 cut(s) | 353, 1519, 1679, 2117, 2792, 2801, 2885, 3267, 3350 |
| Alw44I | GTGCAC | 2 cut(s) | 4354, 4785 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3152, 4526 |
| Ama87I | CYCGRG | 4 cut(s) | 206, 356, 3875, 4118 |
| ApaI | GGGCCC | 1 cut(s) | 4119 |
| ApaLI | GTGCAC | 2 cut(s) | 4354, 4785 |
| AseI | ATTAAT | 1 cut(s) | 990 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 991, 1035, 1120, 4770 |
| Asp718I | GGTACC | 1 cut(s) | 3856 |
| AspLEI | GCGC | 3 cut(s) | 269, 1662, 2240 |
| AsuC2I | CCSGG | 2 cut(s) | 1860, 4113 |
| AsuHPI | GGTGA | 8 cut(s) | 298, 317, 1239, 1241, 1669, 4187, 4226, 4700 |
| AsuII | TTCGAA | 1 cut(s) | 3069 |
| AvaI | CYCGRG | 4 cut(s) | 206, 356, 3875, 4118 |
| AvaII | GGWCC | 7 cut(s) | 182, 2649, 2839, 2995, 3380, 4393, 5087 |
| BaeGI | GKGCMC | 3 cut(s) | 4119, 4358, 4789 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2037, 2070, 3810, 3843 |
| BalI | TGGCCA | 4 cut(s) | 372, 2642, 3943, 4673 |
| BamHI | GGATCC | 1 cut(s) | 1313 |
| BanI | GGYRCC | 4 cut(s) | 191, 1766, 3856, 4871 |
| BanII | GRGCYC | 1 cut(s) | 4119 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1792, 1824 |
| BauI | CACGAG | 1 cut(s) | 3351 |
| BbsI | GAAGAC | 6 cut(s) | 2703, 2892, 3120, 3457, 4006, 4155 |
| Bbv12I | GWGCWC | 6 cut(s) | 1189, 1653, 3059, 4358, 4581, 4789 |
| BbvCI | CCTCAGC | 1 cut(s) | 3309 |
| BccI | CCATC | 7 cut(s) | 1009, 1220, 1688, 2036, 2143, 2171, 3846 |
| BceAI | ACGGC | 3 cut(s) | 2845, 3860, 4885 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 187, 221, 2361, 2395 |
| BciT130I | CCWGG | 8 cut(s) | 242, 554, 575, 876, 2993, 3456, 4173, 4686 |
| BclI | TGATCA | 4 cut(s) | 1924, 3193, 4903, 5071 |
| BcnI | CCSGG | 2 cut(s) | 1860, 4113 |
| BcoDI | GTCTC | 9 cut(s) | 353, 1519, 1679, 2117, 2792, 2801, 2885, 3267, 3350 |
| BcuI | ACTAGT | 1 cut(s) | 2585 |
| BfmI | CTRYAG | 5 cut(s) | 895, 1161, 1270, 2875, 3884 |
| BfrI | CTTAAG | 2 cut(s) | 1307, 4550 |
| BfuAI | ACCTGC | 2 cut(s) | 3313, 5118 |
| BglII | AGATCT | 1 cut(s) | 899 |
| BlpI | GCTNAGC | 2 cut(s) | 2449, 3740 |
| BmcAI | AGTACT | 1 cut(s) | 3935 |
| Bme18I | GGWCC | 7 cut(s) | 182, 2649, 2839, 2995, 3380, 4393, 5087 |
| BmeT110I | CYCGRG | 4 cut(s) | 206, 356, 3875, 4118 |
| BmgBI | CACGTC | 1 cut(s) | 1762 |
| BmrI | ACTGGG | 4 cut(s) | 3490, 3568, 3764, 3905 |
| BmuI | ACTGGG | 4 cut(s) | 3490, 3568, 3764, 3905 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3385 |
| BpiI | GAAGAC | 6 cut(s) | 2703, 2892, 3120, 3457, 4006, 4155 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2777, 2809, 4806, 4838 |
| BpmI | CTGGAG | 3 cut(s) | 557, 708, 1077 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3309 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2449, 3740 |
| Bpu14I | TTCGAA | 1 cut(s) | 3069 |
| BpuEI | CTTGAG | 4 cut(s) | 81, 2722, 4719, 4940 |
| BpuMI | CCSGG | 2 cut(s) | 1860, 4113 |
| BsaAI | YACGTR | 1 cut(s) | 4161 |
| BsaHI | GRCGYC | 1 cut(s) | 2810 |
| BsaI | GGTCTC | 2 cut(s) | 353, 3350 |
| BsaJI | CCNNGG | 9 cut(s) | 663, 1250, 2230, 2294, 2991, 3748, 4112, 4119, 4171 |
| BsaWI | WCCGGW | 1 cut(s) | 3811 |
| Bse118I | RCCGGY | 1 cut(s) | 194 |
| Bse1I | ACTGG | 7 cut(s) | 44, 1812, 3485, 3563, 3669, 3759, 3911 |
| Bse3DI | GCAATG | 7 cut(s) | 51, 1144, 2572, 3591, 4048, 4851, 5032 |
| BseBI | CCWGG | 8 cut(s) | 242, 554, 575, 876, 2993, 3456, 4173, 4686 |
| BseDI | CCNNGG | 9 cut(s) | 663, 1250, 2230, 2294, 2991, 3748, 4112, 4119, 4171 |
| BseMI | GCAATG | 7 cut(s) | 51, 1144, 2572, 3591, 4048, 4851, 5032 |
| BseNI | ACTGG | 7 cut(s) | 44, 1812, 3485, 3563, 3669, 3759, 3911 |
| BseRI | GAGGAG | 7 cut(s) | 661, 765, 2819, 2997, 3326, 4074, 4136 |
| BseSI | GKGCMC | 3 cut(s) | 4119, 4358, 4789 |
| BseYI | CCCAGC | 3 cut(s) | 484, 3847, 5119 |
| BsgI | GTGCAG | 3 cut(s) | 992, 3968, 4003 |
| Bsh1236I | CGCG | 3 cut(s) | 2238, 3635, 5092 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3816 |
| BshNI | GGYRCC | 4 cut(s) | 191, 1766, 3856, 4871 |
| BsiEI | CGRYCG | 1 cut(s) | 3816 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1189, 1653, 3059, 4358, 4581, 4789 |
| BsiHKCI | CYCGRG | 4 cut(s) | 206, 356, 3875, 4118 |
| BsiSI | CCGG | 4 cut(s) | 195, 1860, 3812, 4112 |
| BslFI | GGGAC | 3 cut(s) | 3393, 3497, 4831 |
| BsmAI | GTCTC | 9 cut(s) | 353, 1519, 1679, 2117, 2792, 2801, 2885, 3267, 3350 |
| BsmBI | CGTCTC | 2 cut(s) | 2117, 2801 |
| BsmFI | GGGAC | 3 cut(s) | 3393, 3497, 4831 |
| BsmI | GAATGC | 5 cut(s) | 457, 757, 2265, 2372, 4197 |
| Bso31I | GGTCTC | 2 cut(s) | 353, 3350 |
| BsoBI | CYCGRG | 4 cut(s) | 206, 356, 3875, 4118 |
| Bsp119I | TTCGAA | 1 cut(s) | 3069 |
| Bsp120I | GGGCCC | 1 cut(s) | 4115 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1189, 1653, 3059, 4119, 4358, 4581, 4789 |
| Bsp1407I | TGTACA | 1 cut(s) | 1210 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2449, 3740 |
| Bsp19I | CCATGG | 1 cut(s) | 2294 |
| BspACI | CCGC | 6 cut(s) | 258, 284, 413, 629, 3635, 5090 |
| BspFNI | CGCG | 3 cut(s) | 2238, 3635, 5092 |
| BspHI | TCATGA | 2 cut(s) | 2905, 4906 |
| BspMAI | CTGCAG | 4 cut(s) | 899, 1165, 1274, 3888 |
| BspMI | ACCTGC | 2 cut(s) | 3313, 5118 |
| BspQI | GCTCTTC | 2 cut(s) | 435, 2208 |
| BspT104I | TTCGAA | 1 cut(s) | 3069 |
| BspT107I | GGYRCC | 4 cut(s) | 191, 1766, 3856, 4871 |
| BspTI | CTTAAG | 2 cut(s) | 1307, 4550 |
| BspTNI | GGTCTC | 2 cut(s) | 353, 3350 |
| BsrDI | GCAATG | 7 cut(s) | 51, 1144, 2572, 3591, 4048, 4851, 5032 |
| BsrFI | RCCGGY | 1 cut(s) | 194 |
| BsrGI | TGTACA | 1 cut(s) | 1210 |
| BsrI | ACTGG | 7 cut(s) | 44, 1812, 3485, 3563, 3669, 3759, 3911 |
| BssAI | RCCGGY | 1 cut(s) | 194 |
| BssECI | CCNNGG | 9 cut(s) | 663, 1250, 2230, 2294, 2991, 3748, 4112, 4119, 4171 |
| BssNI | GRCGYC | 1 cut(s) | 2810 |
| BssSI | CACGAG | 1 cut(s) | 3351 |
| BssT1I | CCWWGG | 4 cut(s) | 663, 1250, 2230, 2294 |
| Bst2BI | CACGAG | 1 cut(s) | 3351 |
| Bst2UI | CCWGG | 8 cut(s) | 242, 554, 575, 876, 2993, 3456, 4173, 4686 |
| Bst6I | CTCTTC | 9 cut(s) | 435, 1249, 1445, 2032, 2115, 2208, 3066, 4539, 4617 |
| BstACI | GRCGYC | 1 cut(s) | 2810 |
| BstAFI | CTTAAG | 2 cut(s) | 1307, 4550 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 512, 1657, 2269, 3152, 4103 |
| BstAUI | TGTACA | 1 cut(s) | 1210 |
| BstBAI | YACGTR | 1 cut(s) | 4161 |
| BstBI | TTCGAA | 1 cut(s) | 3069 |
| BstDSI | CCRYGG | 1 cut(s) | 2294 |
| BstFNI | CGCG | 3 cut(s) | 2238, 3635, 5092 |
| BstHHI | GCGC | 3 cut(s) | 269, 1662, 2240 |
| BstMAI | GTCTC | 9 cut(s) | 353, 1519, 1679, 2117, 2792, 2801, 2885, 3267, 3350 |
| BstMCI | CGRYCG | 1 cut(s) | 3816 |
| BstNI | CCWGG | 8 cut(s) | 242, 554, 575, 876, 2993, 3456, 4173, 4686 |
| BstNSI | RCATGY | 5 cut(s) | 533, 1740, 1893, 2823, 4050 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3385 |
| BstSFI | CTRYAG | 5 cut(s) | 895, 1161, 1270, 2875, 3884 |
| BstSLI | GKGCMC | 3 cut(s) | 4119, 4358, 4789 |
| BstSNI | TACGTA | 1 cut(s) | 4161 |
| BstUI | CGCG | 3 cut(s) | 2238, 3635, 5092 |
| BstV2I | GAAGAC | 6 cut(s) | 2703, 2892, 3120, 3457, 4006, 4155 |
| BstX2I | RGATCY | 4 cut(s) | 899, 1238, 1313, 1351 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2944, 4944, 5131 |
| BstYI | RGATCY | 4 cut(s) | 899, 1238, 1313, 1351 |
| BtgI | CCRYGG | 1 cut(s) | 2294 |
| BtrI | CACGTC | 1 cut(s) | 1762 |
| BtsI | GCAGTG | 4 cut(s) | 692, 1073, 1158, 3881 |
| BveI | ACCTGC | 2 cut(s) | 3313, 5118 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3152, 4526 |
| CciI | TCATGA | 2 cut(s) | 2905, 4906 |
| CfoI | GCGC | 3 cut(s) | 269, 1662, 2240 |
| Cfr10I | RCCGGY | 1 cut(s) | 194 |
| CseI | GACGC | 4 cut(s) | 1582, 2292, 2818, 5081 |
| CsiI | ACCWGGT | 1 cut(s) | 4684 |
| DraI | TTTAAA | 1 cut(s) | 2490 |
| DraIII | CACNNNGTG | 4 cut(s) | 1104, 2504, 2764, 4688 |
| EaeI | YGGCCR | 5 cut(s) | 370, 2093, 2640, 3941, 4671 |
| Eam1104I | CTCTTC | 9 cut(s) | 435, 1249, 1445, 2032, 2115, 2208, 3066, 4539, 4617 |
| EarI | CTCTTC | 9 cut(s) | 435, 1249, 1445, 2032, 2115, 2208, 3066, 4539, 4617 |
| Eco105I | TACGTA | 1 cut(s) | 4161 |
| Eco130I | CCWWGG | 4 cut(s) | 663, 1250, 2230, 2294 |
| Eco147I | AGGCCT | 1 cut(s) | 76 |
| Eco24I | GRGCYC | 1 cut(s) | 4119 |
| Eco31I | GGTCTC | 2 cut(s) | 353, 3350 |
| Eco32I | GATATC | 1 cut(s) | 607 |
| Eco47I | GGWCC | 7 cut(s) | 182, 2649, 2839, 2995, 3380, 4393, 5087 |
| Eco57I | CTGAAG | 4 cut(s) | 842, 2423, 3848, 4167 |
| Eco88I | CYCGRG | 4 cut(s) | 206, 356, 3875, 4118 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2995, 4115, 4393 |
| EcoRI | GAATTC | 1 cut(s) | 3650 |
| EcoRII | CCWGG | 8 cut(s) | 240, 552, 573, 874, 2991, 3454, 4171, 4684 |
| EcoRV | GATATC | 1 cut(s) | 607 |
| EcoT14I | CCWWGG | 4 cut(s) | 663, 1250, 2230, 2294 |
| EcoT22I | ATGCAT | 8 cut(s) | 294, 1428, 1742, 2265, 2428, 2945, 3375, 4048 |
| EcoT38I | GRGCYC | 1 cut(s) | 4119 |
| ErhI | CCWWGG | 4 cut(s) | 663, 1250, 2230, 2294 |
| Esp3I | CGTCTC | 2 cut(s) | 2117, 2801 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2097, 2129 |
| FaqI | GGGAC | 3 cut(s) | 3393, 3497, 4831 |
| FauNDI | CATATG | 3 cut(s) | 1402, 2895, 2939 |
| FbaI | TGATCA | 4 cut(s) | 1924, 3193, 4903, 5071 |
| FblI | GTMKAC | 2 cut(s) | 2874, 4298 |
| FriOI | GRGCYC | 1 cut(s) | 4119 |
| GlaI | GCGC | 3 cut(s) | 268, 1661, 2239 |
| GsaI | CCCAGC | 3 cut(s) | 488, 3851, 5123 |
| GsuI | CTGGAG | 3 cut(s) | 557, 708, 1077 |
| HapII | CCGG | 4 cut(s) | 195, 1860, 3812, 4112 |
| HgaI | GACGC | 4 cut(s) | 1582, 2292, 2818, 5081 |
| HhaI | GCGC | 3 cut(s) | 269, 1662, 2240 |
| Hin1I | GRCGYC | 1 cut(s) | 2810 |
| Hin6I | GCGC | 3 cut(s) | 267, 1660, 2238 |
| HinP1I | GCGC | 3 cut(s) | 267, 1660, 2238 |
| HincII | GTYRAC | 3 cut(s) | 2110, 2560, 5013 |
| HindII | GTYRAC | 3 cut(s) | 2110, 2560, 5013 |
| HindIII | AAGCTT | 5 cut(s) | 2624, 3179, 3397, 3956, 4547 |
| HpaI | GTTAAC | 1 cut(s) | 5013 |
| HpaII | CCGG | 4 cut(s) | 195, 1860, 3812, 4112 |
| HphI | GGTGA | 8 cut(s) | 298, 317, 1239, 1241, 1669, 4187, 4226, 4700 |
| Hpy99I | CGWCG | 1 cut(s) | 2094 |
| HpyCH4IV | ACGT | 5 cut(s) | 1761, 2089, 2392, 3832, 4160 |
| HpySE526I | ACGT | 5 cut(s) | 1761, 2089, 2392, 3832, 4160 |
| Hsp92I | GRCGYC | 1 cut(s) | 2810 |
| HspAI | GCGC | 3 cut(s) | 267, 1660, 2238 |
| KpnI | GGTACC | 1 cut(s) | 3860 |
| KroI | GCCGGC | 1 cut(s) | 194 |
| KroNI | GCCGGC | 1 cut(s) | 196 |
| Ksp22I | TGATCA | 4 cut(s) | 1924, 3193, 4903, 5071 |
| KspAI | GTTAAC | 1 cut(s) | 5013 |
| LguI | GCTCTTC | 2 cut(s) | 435, 2208 |
| LmnI | GCTCC | 9 cut(s) | 61, 176, 576, 1609, 2947, 2984, 3313, 3681, 4854 |
| MabI | ACCWGGT | 1 cut(s) | 4684 |
| MaeII | ACGT | 5 cut(s) | 1761, 2089, 2392, 3832, 4160 |
| MfeI | CAATTG | 1 cut(s) | 3229 |
| MflI | RGATCY | 4 cut(s) | 899, 1238, 1313, 1351 |
| MhlI | GDGCHC | 7 cut(s) | 1189, 1653, 3059, 4119, 4358, 4581, 4789 |
| MlsI | TGGCCA | 4 cut(s) | 372, 2642, 3943, 4673 |
| MluNI | TGGCCA | 4 cut(s) | 372, 2642, 3943, 4673 |
| MmeI | TCCRAC | 7 cut(s) | 83, 1203, 1290, 3054, 3808, 4230, 4611 |
| Mox20I | TGGCCA | 4 cut(s) | 372, 2642, 3943, 4673 |
| Mph1103I | ATGCAT | 8 cut(s) | 294, 1428, 1742, 2265, 2428, 2945, 3375, 4048 |
| MroNI | GCCGGC | 1 cut(s) | 194 |
| MroXI | GAANNNNTTC | 4 cut(s) | 991, 1035, 1120, 4770 |
| MscI | TGGCCA | 4 cut(s) | 372, 2642, 3943, 4673 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1013, 1203, 1760, 2680, 2942, 3208 |
| Msp20I | TGGCCA | 4 cut(s) | 372, 2642, 3943, 4673 |
| MspA1I | CMGCKG | 3 cut(s) | 272, 634, 1691 |
| MspCI | CTTAAG | 2 cut(s) | 1307, 4550 |
| MspI | CCGG | 4 cut(s) | 195, 1860, 3812, 4112 |
| MunI | CAATTG | 1 cut(s) | 3229 |
| Mva1269I | GAATGC | 5 cut(s) | 457, 757, 2265, 2372, 4197 |
| MvaI | CCWGG | 8 cut(s) | 242, 554, 575, 876, 2993, 3456, 4173, 4686 |
| MvnI | CGCG | 3 cut(s) | 2238, 3635, 5092 |
| NaeI | GCCGGC | 1 cut(s) | 196 |
| NciI | CCSGG | 2 cut(s) | 1860, 4113 |
| NcoI | CCATGG | 1 cut(s) | 2294 |
| NdeI | CATATG | 3 cut(s) | 1402, 2895, 2939 |
| NgoMIV | GCCGGC | 1 cut(s) | 194 |
| NmuCI | GTSAC | 7 cut(s) | 1071, 1196, 1229, 1501, 1619, 1753, 3879 |
| NsiI | ATGCAT | 8 cut(s) | 294, 1428, 1742, 2265, 2428, 2945, 3375, 4048 |
| NspI | RCATGY | 5 cut(s) | 533, 1740, 1893, 2823, 4050 |
| NspV | TTCGAA | 1 cut(s) | 3069 |
| OliI | CACNNNNGTG | 1 cut(s) | 1760 |
| PaeI | GCATGC | 1 cut(s) | 1893 |
| PaeR7I | CTCGAG | 1 cut(s) | 206 |
| PagI | TCATGA | 2 cut(s) | 2905, 4906 |
| PceI | AGGCCT | 1 cut(s) | 76 |
| PciI | ACATGT | 1 cut(s) | 2819 |
| PciSI | GCTCTTC | 2 cut(s) | 435, 2208 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2095 |
| PctI | GAATGC | 5 cut(s) | 457, 757, 2265, 2372, 4197 |
| PdiI | GCCGGC | 1 cut(s) | 196 |
| PdmI | GAANNNNTTC | 4 cut(s) | 991, 1035, 1120, 4770 |
| PflFI | GACNNNGTC | 1 cut(s) | 3756 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1694 |
| PfoI | TCCNGGA | 3 cut(s) | 552, 573, 1858 |
| Ppu21I | YACGTR | 1 cut(s) | 4161 |
| PpuMI | RGGWCCY | 2 cut(s) | 2995, 4393 |
| PscI | ACATGT | 1 cut(s) | 2819 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3385 |
| PshBI | ATTAAT | 1 cut(s) | 990 |
| PsiI | TTATAA | 1 cut(s) | 1332 |
| Psp5II | RGGWCCY | 2 cut(s) | 2995, 4393 |
| Psp6I | CCWGG | 8 cut(s) | 240, 552, 573, 874, 2991, 3454, 4171, 4684 |
| PspFI | CCCAGC | 3 cut(s) | 484, 3847, 5119 |
| PspGI | CCWGG | 8 cut(s) | 240, 552, 573, 874, 2991, 3454, 4171, 4684 |
| PspOMI | GGGCCC | 1 cut(s) | 4115 |
| PspPPI | RGGWCCY | 2 cut(s) | 2995, 4393 |
| PstI | CTGCAG | 4 cut(s) | 899, 1165, 1274, 3888 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3152, 4526 |
| PsuI | RGATCY | 4 cut(s) | 899, 1238, 1313, 1351 |
| PsyI | GACNNNGTC | 1 cut(s) | 3756 |
| PvuII | CAGCTG | 3 cut(s) | 272, 634, 1691 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1013, 1203, 1760, 2680, 2942, 3208 |
| SapI | GCTCTTC | 2 cut(s) | 435, 2208 |
| ScaI | AGTACT | 1 cut(s) | 3935 |
| SduI | GDGCHC | 7 cut(s) | 1189, 1653, 3059, 4119, 4358, 4581, 4789 |
| SexAI | ACCWGGT | 1 cut(s) | 4684 |
| SfcI | CTRYAG | 5 cut(s) | 895, 1161, 1270, 2875, 3884 |
| Sfr274I | CTCGAG | 1 cut(s) | 206 |
| SfuI | TTCGAA | 1 cut(s) | 3069 |
| SinI | GGWCC | 7 cut(s) | 182, 2649, 2839, 2995, 3380, 4393, 5087 |
| SlaI | CTCGAG | 1 cut(s) | 206 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1013, 1203, 1760, 2680, 2942, 3208 |
| SmlI | CTYRAG | 7 cut(s) | 96, 206, 1307, 2701, 4550, 4734, 4919 |
| SmoI | CTYRAG | 7 cut(s) | 96, 206, 1307, 2701, 4550, 4734, 4919 |
| SnaBI | TACGTA | 1 cut(s) | 4161 |
| SpeI | ACTAGT | 1 cut(s) | 2585 |
| SphI | GCATGC | 1 cut(s) | 1893 |
| SseBI | AGGCCT | 1 cut(s) | 76 |
| SsiI | CCGC | 6 cut(s) | 258, 284, 413, 629, 3635, 5090 |
| SspI | AATATT | 3 cut(s) | 1328, 3094, 5001 |
| StuI | AGGCCT | 1 cut(s) | 76 |
| StyI | CCWWGG | 4 cut(s) | 663, 1250, 2230, 2294 |
| TaiI | ACGT | 5 cut(s) | 1764, 2092, 2395, 3835, 4163 |
| TaqI | TCGA | 5 cut(s) | 207, 215, 3069, 3816, 4813 |
| TatI | WGTACW | 3 cut(s) | 1210, 3933, 4974 |
| TauI | GCSGC | 1 cut(s) | 260 |
| TseFI | GTSAC | 7 cut(s) | 1071, 1196, 1229, 1501, 1619, 1753, 3879 |
| Tsp45I | GTSAC | 7 cut(s) | 1071, 1196, 1229, 1501, 1619, 1753, 3879 |
| TspGWI | ACGGA | 5 cut(s) | 533, 1114, 1897, 2141, 2506 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3756 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1694 |
| Vha464I | CTTAAG | 2 cut(s) | 1307, 4550 |
| VneI | GTGCAC | 2 cut(s) | 4354, 4785 |
| VpaK11BI | GGWCC | 7 cut(s) | 182, 2649, 2839, 2995, 3380, 4393, 5087 |
| VspI | ATTAAT | 1 cut(s) | 990 |
| XbaI | TCTAGA | 2 cut(s) | 3898, 4615 |
| XceI | RCATGY | 5 cut(s) | 533, 1740, 1893, 2823, 4050 |
| XhoI | CTCGAG | 1 cut(s) | 206 |
| XmiI | GTMKAC | 2 cut(s) | 2874, 4298 |
| XmnI | GAANNNNTTC | 4 cut(s) | 991, 1035, 1120, 4770 |
| ZrmI | AGTACT | 1 cut(s) | 3935 |
| Zsp2I | ATGCAT | 8 cut(s) | 294, 1428, 1742, 2265, 2428, 2945, 3375, 4048 |