Permuted single zf-CXXC unit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G36490 |
| fragaria_vesca | FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_3g04410 FvH4_6g17860 |
| malus_domestica | MD12G1017600.v1.1 MD14G1015300.v1.1 |
| prunus_persica | Prupe.7G118000_v2.0.a1 Prupe.7G118000_v2.0.a1 Prupe.7G118000_v2.0.a1 Prupe.7G118000_v2.0.a1 Prupe.7G118000_v2.0.a1 |
| pyrus_communis | pycom12g01420 pycom12g01430 pycom12g01450 pycom14g01290 pycom14g01300 |
| rosa_chinensis | RchiOBHm_Chr3g0472091 |
| rosa_laevigata | RLG00000024104 |
| rosa_multiflora | Rmu_sc0002532.1_g000017 |
| rosa_roxburghii | Rroxscaffold_6G00409250 |
| rosa_rugosa | Rorug03G0122100 |
| rosa_samantha | Rh3AG174000 Rh3AG174100 Rh3BG199400 Rh3CG190400 Rh3CG190500 Rh3CG197800 Rh3CG197900 Rh3DG175100 |
| rosa_wichuraiana | Rw3G016670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1335 |
| Acc36I | ACCTGC | 2 cut(s) | 3316, 5109 |
| Acc65I | GGTACC | 1 cut(s) | 3859 |
| AccB1I | GGYRCC | 4 cut(s) | 191, 1769, 3859, 4862 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1697 |
| AccI | GTMKAC | 2 cut(s) | 2877, 4289 |
| AccII | CGCG | 3 cut(s) | 2241, 3638, 5083 |
| AciI | CCGC | 5 cut(s) | 258, 413, 629, 3638, 5081 |
| AcoI | YGGCCR | 6 cut(s) | 370, 2096, 2643, 3944, 4662, 5124 |
| AcuI | CTGAAG | 5 cut(s) | 842, 1331, 2426, 3851, 4170 |
| AcyI | GRCGYC | 1 cut(s) | 2813 |
| AdeI | CACNNNGTG | 4 cut(s) | 1104, 2507, 2767, 4679 |
| AflII | CTTAAG | 1 cut(s) | 4541 |
| AflIII | ACRYGT | 1 cut(s) | 2822 |
| AhlI | ACTAGT | 1 cut(s) | 2588 |
| AjiI | CACGTC | 1 cut(s) | 1765 |
| AjnI | CCWGG | 9 cut(s) | 240, 552, 573, 874, 2994, 3457, 4114, 4174, 4675 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1842, 1874, 2009, 2041 |
| AleI | CACNNNNGTG | 1 cut(s) | 1763 |
| Alw21I | GWGCWC | 6 cut(s) | 1192, 1656, 3062, 4349, 4572, 4780 |
| Alw26I | GTCTC | 9 cut(s) | 353, 1522, 1682, 2120, 2795, 2804, 2888, 3270, 3353 |
| Alw44I | GTGCAC | 2 cut(s) | 4345, 4776 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3155, 4517 |
| Ama87I | CYCGRG | 4 cut(s) | 206, 356, 3878, 4121 |
| ApaI | GGGCCC | 1 cut(s) | 4122 |
| ApaLI | GTGCAC | 2 cut(s) | 4345, 4776 |
| AseI | ATTAAT | 1 cut(s) | 990 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 991, 1035, 1120 |
| Asp718I | GGTACC | 1 cut(s) | 3859 |
| AspA2I | CCTAGG | 1 cut(s) | 4294 |
| AspLEI | GCGC | 3 cut(s) | 269, 2243, 4145 |
| AsuC2I | CCSGG | 2 cut(s) | 1863, 5098 |
| AsuHPI | GGTGA | 7 cut(s) | 317, 1242, 1244, 1672, 4190, 4217, 4691 |
| AsuII | TTCGAA | 1 cut(s) | 3072 |
| AvaI | CYCGRG | 4 cut(s) | 206, 356, 3878, 4121 |
| AvaII | GGWCC | 7 cut(s) | 182, 2652, 2842, 2998, 3383, 4384, 5078 |
| AvrII | CCTAGG | 1 cut(s) | 4294 |
| BaeGI | GKGCMC | 3 cut(s) | 4122, 4349, 4780 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 1654, 1687, 2040, 2073, 3813, 3846 |
| BalI | TGGCCA | 5 cut(s) | 372, 2645, 3946, 4664, 5126 |
| BamHI | GGATCC | 1 cut(s) | 1316 |
| BanI | GGYRCC | 4 cut(s) | 191, 1769, 3859, 4862 |
| BanII | GRGCYC | 1 cut(s) | 4122 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1795, 1827 |
| BauI | CACGAG | 1 cut(s) | 3354 |
| BbsI | GAAGAC | 6 cut(s) | 2706, 2895, 3123, 3460, 4009, 4158 |
| Bbv12I | GWGCWC | 6 cut(s) | 1192, 1656, 3062, 4349, 4572, 4780 |
| BbvCI | CCTCAGC | 1 cut(s) | 3312 |
| BccI | CCATC | 7 cut(s) | 1009, 1223, 1691, 2039, 2146, 2174, 3849 |
| BceAI | ACGGC | 3 cut(s) | 2848, 3863, 4876 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 187, 221, 2364, 2398 |
| BciT130I | CCWGG | 9 cut(s) | 242, 554, 575, 876, 2996, 3459, 4116, 4176, 4677 |
| BclI | TGATCA | 4 cut(s) | 1927, 3196, 4894, 5062 |
| BcnI | CCSGG | 2 cut(s) | 1863, 5098 |
| BcoDI | GTCTC | 9 cut(s) | 353, 1522, 1682, 2120, 2795, 2804, 2888, 3270, 3353 |
| BcuI | ACTAGT | 1 cut(s) | 2588 |
| BfmI | CTRYAG | 6 cut(s) | 516, 895, 1164, 1273, 2878, 3887 |
| BfrI | CTTAAG | 1 cut(s) | 4541 |
| BfuAI | ACCTGC | 2 cut(s) | 3316, 5109 |
| BglII | AGATCT | 2 cut(s) | 235, 899 |
| BlnI | CCTAGG | 1 cut(s) | 4294 |
| BlpI | GCTNAGC | 2 cut(s) | 2452, 3743 |
| BmcAI | AGTACT | 1 cut(s) | 3938 |
| Bme18I | GGWCC | 7 cut(s) | 182, 2652, 2842, 2998, 3383, 4384, 5078 |
| BmeT110I | CYCGRG | 4 cut(s) | 206, 356, 3878, 4121 |
| BmgBI | CACGTC | 1 cut(s) | 1765 |
| BmrI | ACTGGG | 5 cut(s) | 49, 3493, 3571, 3767, 3908 |
| BmuI | ACTGGG | 5 cut(s) | 49, 3493, 3571, 3767, 3908 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3388 |
| BpiI | GAAGAC | 6 cut(s) | 2706, 2895, 3123, 3460, 4009, 4158 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2780, 2812, 4797, 4829 |
| BpmI | CTGGAG | 3 cut(s) | 557, 708, 1077 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3312 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2452, 3743 |
| Bpu14I | TTCGAA | 1 cut(s) | 3072 |
| BpuEI | CTTGAG | 4 cut(s) | 81, 2725, 4710, 4931 |
| BpuMI | CCSGG | 2 cut(s) | 1863, 5098 |
| BsaHI | GRCGYC | 1 cut(s) | 2813 |
| BsaI | GGTCTC | 2 cut(s) | 353, 3353 |
| BsaWI | WCCGGW | 1 cut(s) | 3814 |
| Bse118I | RCCGGY | 1 cut(s) | 194 |
| Bse1I | ACTGG | 7 cut(s) | 44, 1815, 3488, 3566, 3672, 3762, 3914 |
| Bse3DI | GCAATG | 6 cut(s) | 51, 2575, 3594, 4051, 4842, 5023 |
| BseBI | CCWGG | 9 cut(s) | 242, 554, 575, 876, 2996, 3459, 4116, 4176, 4677 |
| BseMI | GCAATG | 6 cut(s) | 51, 2575, 3594, 4051, 4842, 5023 |
| BseNI | ACTGG | 7 cut(s) | 44, 1815, 3488, 3566, 3672, 3762, 3914 |
| BseRI | GAGGAG | 7 cut(s) | 661, 765, 2822, 3000, 3329, 4077, 4139 |
| BseSI | GKGCMC | 3 cut(s) | 4122, 4349, 4780 |
| BseYI | CCCAGC | 3 cut(s) | 484, 3850, 5110 |
| BsgI | GTGCAG | 5 cut(s) | 992, 1148, 1646, 3971, 4006 |
| Bsh1236I | CGCG | 3 cut(s) | 2241, 3638, 5083 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3819 |
| BshNI | GGYRCC | 4 cut(s) | 191, 1769, 3859, 4862 |
| BsiEI | CGRYCG | 1 cut(s) | 3819 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1192, 1656, 3062, 4349, 4572, 4780 |
| BsiHKCI | CYCGRG | 4 cut(s) | 206, 356, 3878, 4121 |
| BsiSI | CCGG | 4 cut(s) | 195, 1863, 3815, 5098 |
| BslFI | GGGAC | 3 cut(s) | 3396, 3500, 4822 |
| BsmAI | GTCTC | 9 cut(s) | 353, 1522, 1682, 2120, 2795, 2804, 2888, 3270, 3353 |
| BsmBI | CGTCTC | 2 cut(s) | 2120, 2804 |
| BsmFI | GGGAC | 3 cut(s) | 3396, 3500, 4822 |
| BsmI | GAATGC | 5 cut(s) | 457, 757, 2268, 2375, 4200 |
| Bso31I | GGTCTC | 2 cut(s) | 353, 3353 |
| BsoBI | CYCGRG | 4 cut(s) | 206, 356, 3878, 4121 |
| Bsp119I | TTCGAA | 1 cut(s) | 3072 |
| Bsp120I | GGGCCC | 1 cut(s) | 4118 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1192, 1656, 3062, 4122, 4349, 4572, 4780 |
| Bsp1407I | TGTACA | 1 cut(s) | 1213 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2452, 3743 |
| Bsp19I | CCATGG | 1 cut(s) | 2297 |
| BspACI | CCGC | 5 cut(s) | 258, 413, 629, 3638, 5081 |
| BspFNI | CGCG | 3 cut(s) | 2241, 3638, 5083 |
| BspHI | TCATGA | 2 cut(s) | 2908, 4897 |
| BspMAI | CTGCAG | 4 cut(s) | 899, 1168, 1277, 3891 |
| BspMI | ACCTGC | 2 cut(s) | 3316, 5109 |
| BspQI | GCTCTTC | 2 cut(s) | 435, 2211 |
| BspT104I | TTCGAA | 1 cut(s) | 3072 |
| BspT107I | GGYRCC | 4 cut(s) | 191, 1769, 3859, 4862 |
| BspTI | CTTAAG | 1 cut(s) | 4541 |
| BspTNI | GGTCTC | 2 cut(s) | 353, 3353 |
| BsrDI | GCAATG | 6 cut(s) | 51, 2575, 3594, 4051, 4842, 5023 |
| BsrFI | RCCGGY | 1 cut(s) | 194 |
| BsrGI | TGTACA | 1 cut(s) | 1213 |
| BsrI | ACTGG | 7 cut(s) | 44, 1815, 3488, 3566, 3672, 3762, 3914 |
| BssAI | RCCGGY | 1 cut(s) | 194 |
| BssNI | GRCGYC | 1 cut(s) | 2813 |
| BssSI | CACGAG | 1 cut(s) | 3354 |
| BssT1I | CCWWGG | 5 cut(s) | 663, 1253, 2233, 2297, 4294 |
| Bst2BI | CACGAG | 1 cut(s) | 3354 |
| Bst2UI | CCWGG | 9 cut(s) | 242, 554, 575, 876, 2996, 3459, 4116, 4176, 4677 |
| BstACI | GRCGYC | 1 cut(s) | 2813 |
| BstAFI | CTTAAG | 1 cut(s) | 4541 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 512, 1660, 2272, 3155, 4106 |
| BstAUI | TGTACA | 1 cut(s) | 1213 |
| BstBI | TTCGAA | 1 cut(s) | 3072 |
| BstDSI | CCRYGG | 1 cut(s) | 2297 |
| BstFNI | CGCG | 3 cut(s) | 2241, 3638, 5083 |
| BstHHI | GCGC | 3 cut(s) | 269, 2243, 4145 |
| BstMAI | GTCTC | 9 cut(s) | 353, 1522, 1682, 2120, 2795, 2804, 2888, 3270, 3353 |
| BstMCI | CGRYCG | 1 cut(s) | 3819 |
| BstNI | CCWGG | 9 cut(s) | 242, 554, 575, 876, 2996, 3459, 4116, 4176, 4677 |
| BstNSI | RCATGY | 6 cut(s) | 533, 1743, 1896, 2826, 2950, 4053 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3388 |
| BstSFI | CTRYAG | 6 cut(s) | 516, 895, 1164, 1273, 2878, 3887 |
| BstSLI | GKGCMC | 3 cut(s) | 4122, 4349, 4780 |
| BstUI | CGCG | 3 cut(s) | 2241, 3638, 5083 |
| BstV2I | GAAGAC | 6 cut(s) | 2706, 2895, 3123, 3460, 4009, 4158 |
| BstX2I | RGATCY | 5 cut(s) | 235, 899, 1241, 1316, 1354 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 4935, 5122 |
| BstYI | RGATCY | 5 cut(s) | 235, 899, 1241, 1316, 1354 |
| BtgI | CCRYGG | 1 cut(s) | 2297 |
| BtrI | CACGTC | 1 cut(s) | 1765 |
| BtsI | GCAGTG | 4 cut(s) | 692, 1073, 1161, 3884 |
| BveI | ACCTGC | 2 cut(s) | 3316, 5109 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3155, 4517 |
| CciI | TCATGA | 2 cut(s) | 2908, 4897 |
| CfoI | GCGC | 3 cut(s) | 269, 2243, 4145 |
| Cfr10I | RCCGGY | 1 cut(s) | 194 |
| CseI | GACGC | 4 cut(s) | 1585, 2295, 2821, 5072 |
| CsiI | ACCWGGT | 1 cut(s) | 4675 |
| DraIII | CACNNNGTG | 4 cut(s) | 1104, 2507, 2767, 4679 |
| EaeI | YGGCCR | 6 cut(s) | 370, 2096, 2643, 3944, 4662, 5124 |
| Eco130I | CCWWGG | 5 cut(s) | 663, 1253, 2233, 2297, 4294 |
| Eco147I | AGGCCT | 1 cut(s) | 76 |
| Eco24I | GRGCYC | 1 cut(s) | 4122 |
| Eco31I | GGTCTC | 2 cut(s) | 353, 3353 |
| Eco47I | GGWCC | 7 cut(s) | 182, 2652, 2842, 2998, 3383, 4384, 5078 |
| Eco57I | CTGAAG | 5 cut(s) | 842, 1331, 2426, 3851, 4170 |
| Eco88I | CYCGRG | 4 cut(s) | 206, 356, 3878, 4121 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2998, 4118, 4384 |
| EcoRI | GAATTC | 1 cut(s) | 3653 |
| EcoRII | CCWGG | 9 cut(s) | 240, 552, 573, 874, 2994, 3457, 4114, 4174, 4675 |
| EcoT14I | CCWWGG | 5 cut(s) | 663, 1253, 2233, 2297, 4294 |
| EcoT22I | ATGCAT | 8 cut(s) | 294, 1431, 1745, 2268, 2431, 2948, 3378, 4051 |
| EcoT38I | GRGCYC | 1 cut(s) | 4122 |
| ErhI | CCWWGG | 5 cut(s) | 663, 1253, 2233, 2297, 4294 |
| Esp3I | CGTCTC | 2 cut(s) | 2120, 2804 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2100, 2132 |
| FaqI | GGGAC | 3 cut(s) | 3396, 3500, 4822 |
| FauNDI | CATATG | 3 cut(s) | 1405, 2898, 2942 |
| FbaI | TGATCA | 4 cut(s) | 1927, 3196, 4894, 5062 |
| FblI | GTMKAC | 2 cut(s) | 2877, 4289 |
| FriOI | GRGCYC | 1 cut(s) | 4122 |
| GlaI | GCGC | 3 cut(s) | 268, 2242, 4144 |
| GsaI | CCCAGC | 3 cut(s) | 488, 3854, 5114 |
| GsuI | CTGGAG | 3 cut(s) | 557, 708, 1077 |
| HapII | CCGG | 4 cut(s) | 195, 1863, 3815, 5098 |
| HgaI | GACGC | 4 cut(s) | 1585, 2295, 2821, 5072 |
| HhaI | GCGC | 3 cut(s) | 269, 2243, 4145 |
| Hin1I | GRCGYC | 1 cut(s) | 2813 |
| Hin6I | GCGC | 3 cut(s) | 267, 2241, 4143 |
| HinP1I | GCGC | 3 cut(s) | 267, 2241, 4143 |
| HincII | GTYRAC | 3 cut(s) | 2113, 2563, 5004 |
| HindII | GTYRAC | 3 cut(s) | 2113, 2563, 5004 |
| HindIII | AAGCTT | 6 cut(s) | 2627, 3182, 3400, 3745, 3959, 4538 |
| HpaI | GTTAAC | 1 cut(s) | 5004 |
| HpaII | CCGG | 4 cut(s) | 195, 1863, 3815, 5098 |
| HphI | GGTGA | 7 cut(s) | 317, 1242, 1244, 1672, 4190, 4217, 4691 |
| Hpy99I | CGWCG | 1 cut(s) | 2097 |
| HpyCH4IV | ACGT | 4 cut(s) | 1764, 2092, 2395, 3835 |
| HpySE526I | ACGT | 4 cut(s) | 1764, 2092, 2395, 3835 |
| Hsp92I | GRCGYC | 1 cut(s) | 2813 |
| HspAI | GCGC | 3 cut(s) | 267, 2241, 4143 |
| KpnI | GGTACC | 1 cut(s) | 3863 |
| KroI | GCCGGC | 1 cut(s) | 194 |
| KroNI | GCCGGC | 1 cut(s) | 196 |
| Ksp22I | TGATCA | 4 cut(s) | 1927, 3196, 4894, 5062 |
| KspAI | GTTAAC | 1 cut(s) | 5004 |
| LguI | GCTCTTC | 2 cut(s) | 435, 2211 |
| LmnI | GCTCC | 8 cut(s) | 61, 176, 576, 1612, 2987, 3316, 3684, 4845 |
| MabI | ACCWGGT | 1 cut(s) | 4675 |
| MaeII | ACGT | 4 cut(s) | 1764, 2092, 2395, 3835 |
| MfeI | CAATTG | 1 cut(s) | 3232 |
| MflI | RGATCY | 5 cut(s) | 235, 899, 1241, 1316, 1354 |
| MhlI | GDGCHC | 7 cut(s) | 1192, 1656, 3062, 4122, 4349, 4572, 4780 |
| MlsI | TGGCCA | 5 cut(s) | 372, 2645, 3946, 4664, 5126 |
| MluNI | TGGCCA | 5 cut(s) | 372, 2645, 3946, 4664, 5126 |
| MmeI | TCCRAC | 8 cut(s) | 83, 1206, 1293, 2308, 3057, 3811, 4221, 4602 |
| Mox20I | TGGCCA | 5 cut(s) | 372, 2645, 3946, 4664, 5126 |
| Mph1103I | ATGCAT | 8 cut(s) | 294, 1431, 1745, 2268, 2431, 2948, 3378, 4051 |
| MroNI | GCCGGC | 1 cut(s) | 194 |
| MroXI | GAANNNNTTC | 3 cut(s) | 991, 1035, 1120 |
| MscI | TGGCCA | 5 cut(s) | 372, 2645, 3946, 4664, 5126 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1013, 1206, 1763, 2683, 2945, 3211 |
| Msp20I | TGGCCA | 5 cut(s) | 372, 2645, 3946, 4664, 5126 |
| MspA1I | CMGCKG | 3 cut(s) | 272, 634, 1694 |
| MspCI | CTTAAG | 1 cut(s) | 4541 |
| MspI | CCGG | 4 cut(s) | 195, 1863, 3815, 5098 |
| MunI | CAATTG | 1 cut(s) | 3232 |
| Mva1269I | GAATGC | 5 cut(s) | 457, 757, 2268, 2375, 4200 |
| MvaI | CCWGG | 9 cut(s) | 242, 554, 575, 876, 2996, 3459, 4116, 4176, 4677 |
| MvnI | CGCG | 3 cut(s) | 2241, 3638, 5083 |
| NaeI | GCCGGC | 1 cut(s) | 196 |
| NciI | CCSGG | 2 cut(s) | 1863, 5098 |
| NcoI | CCATGG | 1 cut(s) | 2297 |
| NdeI | CATATG | 3 cut(s) | 1405, 2898, 2942 |
| NgoMIV | GCCGGC | 1 cut(s) | 194 |
| NmuCI | GTSAC | 7 cut(s) | 1071, 1199, 1232, 1504, 1622, 1756, 3882 |
| NsiI | ATGCAT | 8 cut(s) | 294, 1431, 1745, 2268, 2431, 2948, 3378, 4051 |
| NspI | RCATGY | 6 cut(s) | 533, 1743, 1896, 2826, 2950, 4053 |
| NspV | TTCGAA | 1 cut(s) | 3072 |
| OliI | CACNNNNGTG | 1 cut(s) | 1763 |
| PaeI | GCATGC | 2 cut(s) | 1896, 2950 |
| PaeR7I | CTCGAG | 1 cut(s) | 206 |
| PagI | TCATGA | 2 cut(s) | 2908, 4897 |
| PceI | AGGCCT | 1 cut(s) | 76 |
| PciI | ACATGT | 1 cut(s) | 2822 |
| PciSI | GCTCTTC | 2 cut(s) | 435, 2211 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2098 |
| PctI | GAATGC | 5 cut(s) | 457, 757, 2268, 2375, 4200 |
| PdiI | GCCGGC | 1 cut(s) | 196 |
| PdmI | GAANNNNTTC | 3 cut(s) | 991, 1035, 1120 |
| PflFI | GACNNNGTC | 1 cut(s) | 3759 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1697 |
| PfoI | TCCNGGA | 3 cut(s) | 552, 573, 1861 |
| PpuMI | RGGWCCY | 2 cut(s) | 2998, 4384 |
| PscI | ACATGT | 1 cut(s) | 2822 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3388 |
| PshBI | ATTAAT | 1 cut(s) | 990 |
| PsiI | TTATAA | 1 cut(s) | 1335 |
| Psp5II | RGGWCCY | 2 cut(s) | 2998, 4384 |
| Psp6I | CCWGG | 9 cut(s) | 240, 552, 573, 874, 2994, 3457, 4114, 4174, 4675 |
| PspFI | CCCAGC | 3 cut(s) | 484, 3850, 5110 |
| PspGI | CCWGG | 9 cut(s) | 240, 552, 573, 874, 2994, 3457, 4114, 4174, 4675 |
| PspOMI | GGGCCC | 1 cut(s) | 4118 |
| PspPPI | RGGWCCY | 2 cut(s) | 2998, 4384 |
| PstI | CTGCAG | 4 cut(s) | 899, 1168, 1277, 3891 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3155, 4517 |
| PsuI | RGATCY | 5 cut(s) | 235, 899, 1241, 1316, 1354 |
| PsyI | GACNNNGTC | 1 cut(s) | 3759 |
| PvuII | CAGCTG | 3 cut(s) | 272, 634, 1694 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1013, 1206, 1763, 2683, 2945, 3211 |
| SapI | GCTCTTC | 2 cut(s) | 435, 2211 |
| ScaI | AGTACT | 1 cut(s) | 3938 |
| SduI | GDGCHC | 7 cut(s) | 1192, 1656, 3062, 4122, 4349, 4572, 4780 |
| SexAI | ACCWGGT | 1 cut(s) | 4675 |
| SfcI | CTRYAG | 6 cut(s) | 516, 895, 1164, 1273, 2878, 3887 |
| Sfr274I | CTCGAG | 1 cut(s) | 206 |
| SfuI | TTCGAA | 1 cut(s) | 3072 |
| SinI | GGWCC | 7 cut(s) | 182, 2652, 2842, 2998, 3383, 4384, 5078 |
| SlaI | CTCGAG | 1 cut(s) | 206 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1013, 1206, 1763, 2683, 2945, 3211 |
| SmlI | CTYRAG | 6 cut(s) | 96, 206, 2704, 4541, 4725, 4910 |
| SmoI | CTYRAG | 6 cut(s) | 96, 206, 2704, 4541, 4725, 4910 |
| SpeI | ACTAGT | 1 cut(s) | 2588 |
| SphI | GCATGC | 2 cut(s) | 1896, 2950 |
| SseBI | AGGCCT | 1 cut(s) | 76 |
| SsiI | CCGC | 5 cut(s) | 258, 413, 629, 3638, 5081 |
| SspI | AATATT | 3 cut(s) | 1331, 3097, 4992 |
| StuI | AGGCCT | 1 cut(s) | 76 |
| StyI | CCWWGG | 5 cut(s) | 663, 1253, 2233, 2297, 4294 |
| TaiI | ACGT | 4 cut(s) | 1767, 2095, 2398, 3838 |
| TaqI | TCGA | 5 cut(s) | 207, 215, 3072, 3819, 4804 |
| TatI | WGTACW | 3 cut(s) | 1213, 3936, 4965 |
| TauI | GCSGC | 1 cut(s) | 260 |
| TseFI | GTSAC | 7 cut(s) | 1071, 1199, 1232, 1504, 1622, 1756, 3882 |
| Tsp45I | GTSAC | 7 cut(s) | 1071, 1199, 1232, 1504, 1622, 1756, 3882 |
| TspGWI | ACGGA | 5 cut(s) | 1114, 1900, 2144, 2201, 2509 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3759 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1697 |
| Vha464I | CTTAAG | 1 cut(s) | 4541 |
| VneI | GTGCAC | 2 cut(s) | 4345, 4776 |
| VpaK11BI | GGWCC | 7 cut(s) | 182, 2652, 2842, 2998, 3383, 4384, 5078 |
| VspI | ATTAAT | 1 cut(s) | 990 |
| XbaI | TCTAGA | 2 cut(s) | 3901, 4606 |
| XceI | RCATGY | 6 cut(s) | 533, 1743, 1896, 2826, 2950, 4053 |
| XhoI | CTCGAG | 1 cut(s) | 206 |
| XmaJI | CCTAGG | 1 cut(s) | 4294 |
| XmiI | GTMKAC | 2 cut(s) | 2877, 4289 |
| XmnI | GAANNNNTTC | 3 cut(s) | 991, 1035, 1120 |
| ZrmI | AGTACT | 1 cut(s) | 3938 |
| Zsp2I | ATGCAT | 8 cut(s) | 294, 1431, 1745, 2268, 2431, 2948, 3378, 4051 |