Rh3CG197800

Permuted single zf-CXXC unit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002894
Physical Location & Seq
Forward (+)
17674955 .. 17680252
5298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG197800.1

Sequence Viewer

Length: 3921 bp
ATGGATATGAATGAACAGAGAAAAGATGCCTTCCAAGACTGGGCTTCTTGCATTGCTCCAACAACTCCTTACAGGCCTATTCTCCCAAAACCACCTCAAGAACATAAACACCATGAATTTTTTATGCCCCCAAATAAATTCCCGTTTGCTTTACCAGCCAATGAAGGGAATAATGGAGCTGGACCTGTTGGTGCCGGCAACACACTCGAGATGTCGAGAGAGGTTCCTTGTATAGATCTCCTGGCCCTTGCCCATGCCGCCTCTAGCGCAGCTGATAATAATGCTGTCATGCATGGAGAACCTCAGTATGATGTTCCCTTTCCTCACCACCTTCCTTATGATCTAAATTCACTACCCGAGACCACCTATGGCCAATTTGCACCCATAACACCAGAGAAGGCAAGCTCAAATGCGGATCATAGAAAAGACCAGCAAATTGAAGAGCAGATGAATGCTGGTGCTACCACATTTGAAATCTTTGAGCTGGGAAATAATAAAGATGTTGCAAACCCTGCTACAGATTCTTCACATGCTACTTTTTCCACACAAGTCCAGGAGAATCAGACACAGCTCCAGGATAATCACATCATCAAGGAAGGGAATGATAGCATTGACTTGAATAAGACACCGCAGCTGAAACAAAGGAGGAGAAAGCACAGGCCCAAGGTTATTAGAGAAGGCAAGCCAAAACCACTGCCGAAACCTCCTACTACTAAGGAAACTCCAGCCAGAAGAAAGTATGTAAGGAAGAATGCACTAGACAAAAATGCAACTCCTCCCCCACCAAAGGAACTTGGGGAGTGTACCGATTCAAATAATCTGAAGTCCACGAAGAGATCATGCAGAAGGGTGTTAAATTATGACATGGAAGAACCAGGAGATGATATATCCTCCTGCAGATCTTTCAATTCAGGTTCGGACTCTCAGATGCGTAATTTTTGCACCAATGGAGTTGCATCAAAATCAACTGTGCAGCTCAGAAATGGAATTAATTCAATGGTAGATAACACTCGGATGGAGTTAGCCCATGAACTTGTTCTTTCTACAAATCAATGGCTGAAAGAACACTTGTCACTGCCTGAACAACAATCTCCAGCCACACCGTGTCCTGCCAGAAATAGTTCCGTGCAGCCTAGAGAGTATGTTGATTGCCAACAAGACACTGCAGAAGGAAAAGCAAGAGTGAGTGCTCAAATCTGTCACAAAAATGCTGTACAAACCATGTTGGATGGTGACACTAGATCCTCTTCACCAAGGCCAAATGACTCCAACTGCAGCTCATCCATGATTCTGACACAAGAAAATGAACTGAAGGGATCCAAGCGAAAATATTATAATGCTGTTCAGCAGACAGATCCTAGTACCCGAAATTTACTTGGGGTTCACTACAATAATATGCCAGCATATGACAACATGATGTCTTATATGCATTTTCCATACATATACAAGAAGAAGAGGACTGATAAGGCATATACTTCTATCATATCAAGCACATCATGTCGTGTGACTATGGCAGAAAATGTTTGGAGACAATCAAAACTGCAAGCTGTTGAGTCTATCCTGCCTTCGTACCAGACGCAGAGTTCAAAAAAGAGAAGATCAAAAGCTCCTACACGGGTTCGTGACTTGGCTTCTCTAATTAGAACACCAGAGCACATTCTGCACCAGAGTACCTGTCTCACCAAACCACCAGCTGATGGTAATGGGCAAAGACCTATGAACTGTAACTCAACTCAGACATGCATGGATGCCCTAGTCACTGACGTGGGTGCCACACTCGCAAAGAAAAAGAGAACAAAGAGAAGTTCTGTTACCAGTTCACACCGAAGTATTGTGCTATACAAGAACCAACCATTTGTTCCCGGATCATCAGGTGTTCCACCAGAAGTAGCATGCACACAAATTCTTTCCGTTGATGCTATTACTGATCAATTAAAATGTTTGAACTTAAATAGAGAGAACAGCAAATTTGCATATCAGGGGTATAATGTTGTCTATAATACACAAAAGCAAGAGAACAATGCTTTGGTTCTTTATAGAAGAGATGGCACTGTTGTACCATTTGAGGGGGCTTTTGATCCTATCAAGAAACGTCGGCCACGACCTAAAGTTGACCTTGATGAAGAGACGGATAAAGTATGGAAGCTGCTGATGGATAACATAAACAGTGAAGGCGTTGATGGAACGGATGAACAGAAAGCAAAATGGTGGGAAGAAGAGCGTAGAGTGTTCCAAGGTCGCGCAGACTCTTTTATCGCACGAATGCATCTTGTGCAAGGAGATAGACGCTTCTCTCCATGGAAAGGATCAGTTGTGGACTCAGTGGTTGGAGTTTTCCTGACTCAAAATGTGTCAGATCATCTGTCTAGCTCTGCATTCATGTCGCTCGCAGCACGTTTTCCCCTGAAGTCAGTGAGCAACCAAAATGCATCTGATGAAAAAGTTGCAGGCTTAGCAGTAGATGAACCAGAAGTGTGCATTAGTGAGATTTCAAACCAGCCACTCTGTGATTCTAGTTCCGTAACATTCCATGACACTGAGCATAGTGAAGAAAAAGTTGTCAACAGCAATGAGAACACAGAAACCACTAGTGAGGGAGTTATCTCTACAAATGAACCCGACTGCAAGCTTTCACATTCATTGGCCAACAGGTCCACCACCATAAACCCAAGAACAGCATCAGAATGTTGCATAGAGGAAGACTTGAGAACAGGATATGATATAGTTTCATCTCAAAATTCTGTGGATTCTTCAACTTCTCACACTGTGGAAAAAACAGGATCATGTGAGAGCAACTCAGAGACAGAGGAGACGCCTAATACATGTCAAAACGGCAGTTTGGACCATTCCACTTCGTTTTTACAGAAGGCCGAAGTCTACAGTCTCAAAACCAGCCATATGTCTTCTCATGACAATTTGAATTGTGAACTTTATGAACCCATATGCATGCAGCATGATGACCAAAGAAGATATATAGACAGGGGAGGAGCATCCCAGGACCCTTCCAATAATTTTTGTTTGCATATTACCTCCAACCCAGAAGTAGTGCAAGTTGAGTGCTCTGAGTTGTTCGAAGAGGTAATCCAATCTTCTAATATTTCCAAGAACAAATATGAAGACAGTCTGGGGGAACAGAGTGTGCTAACAGCAGAATCTGCGAGTCAAGATACAATAAGTAATAAGCTTACTGTGAATGATCAAGATGCACAGAGATGTTTCAATGAATCATGCAATTGCATTGAGGGAAAAAATAACTTGGTTCAGTCTCAATTCAGGGTGGGTGGGAACCCGAATAAGGTTGATGTACCTGCTGAGGAGCATAAAAATAAGATTCAGCAAAATTGCAACATTTCTCGTGAGACCACAGATATTATGCATAAGGGACCAGAGTCAGATTTAAGCTTCAACGAGGTCAGTAAGGTGGATGCTGCTACCTCAAAGACAAAGAACAGAAGACCTGGAAAAGAGAAAAAGCAGCAGGACTGGGACAAATTAAGAGAACGAGCAGAACCAAATGGAAGAAAAAGGGAGAAAACAGCAAATACAATGGATTCAGTGGACTGGGAAGCTGTAAGAACTGCAAATGTAAATGACATTGCCCAAACTATCAAAGAGAGGGGGATGAATAATATGCTCGCGGAAAGAATCAAGGAATTCCTTAACCGACTGGTTAGAGAACACGGGAGCGTTGATCTTGAATGGTTGAGAGATGTTCCACCTGACCAAGCAAAAGAGTATCTGCTAAGCTTCCGAGGACTGGGTCTAAAAAGCGTGGAGTGTGTGAGGCTTTTGACACTTCATCATCTTGCTTTTCCGGTCGATACAAATGTTGGACGTATTGCTGTACGGCTGGGATGGGTACCCCTTCAGCCCTTGCCCGAGTCACTGCAGTTGCATCTTCTAGAACTGTTAGTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Perm-CXXC RRM_DME

Protein Analysis

1306

Amino Acids

146.38

Weight (kDa)

6.26

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1335
Acc36I ACCTGC 1 cut(s) 3316
Acc65I GGTACC 1 cut(s) 3859
AccB1I GGYRCC 3 cut(s) 191, 1769, 3859
AccB7I CCANNNNNTGG 1 cut(s) 1697
AccI GTMKAC 1 cut(s) 2877
AccII CGCG 2 cut(s) 2241, 3638
AciI CCGC 4 cut(s) 258, 413, 629, 3638
AclWI GGATC 9 cut(s) 423, 1236, 1311, 1324, 1349, 1873, 2072, 2314, 2788
AcoI YGGCCR 3 cut(s) 370, 2096, 2643
AcsI RAATTY 8 cut(s) 116, 137, 346, 1369, 1902, 1967, 2737, 3653
AcuI CTGAAG 4 cut(s) 842, 1331, 2426, 3851
AcyI GRCGYC 1 cut(s) 2813
AdeI CACNNNGTG 3 cut(s) 1104, 2507, 2767
AfaI GTAC 9 cut(s) 805, 1215, 1363, 1571, 1672, 2058, 3306, 3846, 3861
AfiI CCNNNNNNNGG 8 cut(s) 40, 165, 787, 1697, 2066, 2303, 3295, 3757
AflIII ACRYGT 1 cut(s) 2822
AhlI ACTAGT 1 cut(s) 2588
AjiI CACGTC 1 cut(s) 1765
AjnI CCWGG 6 cut(s) 240, 552, 573, 874, 2994, 3457
AjuI GAANNNNNNNTTGG 4 cut(s) 1842, 1874, 2009, 2041
AleI CACNNNNGTG 1 cut(s) 1763
Alw21I GWGCWC 3 cut(s) 1192, 1656, 3062
Alw26I GTCTC 9 cut(s) 353, 1522, 1682, 2120, 2795, 2804, 2888, 3270, 3353
AlwI GGATC 9 cut(s) 423, 1236, 1311, 1324, 1349, 1873, 2072, 2314, 2788
AlwNI CAGNNNCTG 1 cut(s) 3155
Ama87I CYCGRG 3 cut(s) 206, 356, 3878
AoxI GGCC 8 cut(s) 74, 243, 370, 659, 1256, 2096, 2643, 2868
ApoI RAATTY 8 cut(s) 116, 137, 346, 1369, 1902, 1967, 2737, 3653
AseI ATTAAT 1 cut(s) 990
Asp700I GAANNNNTTC 3 cut(s) 991, 1035, 1120
Asp718I GGTACC 1 cut(s) 3859
AspLEI GCGC 2 cut(s) 269, 2243
AspS9I GGNCC 7 cut(s) 182, 244, 660, 2652, 2842, 2998, 3383
AsuC2I CCSGG 1 cut(s) 1863
AsuHPI GGTGA 4 cut(s) 317, 1242, 1244, 1672
AsuII TTCGAA 1 cut(s) 3072
AvaI CYCGRG 3 cut(s) 206, 356, 3878
AvaII GGWCC 5 cut(s) 182, 2652, 2842, 2998, 3383
BaeI ACNNNNGTAYC 6 cut(s) 1654, 1687, 2040, 2073, 3813, 3846
BalI TGGCCA 2 cut(s) 372, 2645
BamHI GGATCC 1 cut(s) 1316
BanI GGYRCC 3 cut(s) 191, 1769, 3859
BarI GAAGNNNNNNTAC 2 cut(s) 1795, 1827
BauI CACGAG 1 cut(s) 3354
BbsI GAAGAC 4 cut(s) 2706, 2895, 3123, 3460
Bbv12I GWGCWC 3 cut(s) 1192, 1656, 3062
BbvCI CCTCAGC 1 cut(s) 3312
BccI CCATC 7 cut(s) 1009, 1223, 1691, 2039, 2146, 2174, 3849
BceAI ACGGC 2 cut(s) 2848, 3863
BcgI CGANNNNNNTGC 4 cut(s) 187, 221, 2364, 2398
BciT130I CCWGG 6 cut(s) 242, 554, 575, 876, 2996, 3459
BclI TGATCA 2 cut(s) 1927, 3196
BcnI CCSGG 1 cut(s) 1863
BcoDI GTCTC 9 cut(s) 353, 1522, 1682, 2120, 2795, 2804, 2888, 3270, 3353
BcuI ACTAGT 1 cut(s) 2588
BfmI CTRYAG 6 cut(s) 516, 895, 1164, 1273, 2878, 3887
BfuAI ACCTGC 1 cut(s) 3316
BglII AGATCT 2 cut(s) 235, 899
BlpI GCTNAGC 2 cut(s) 2452, 3743
Bme1390I CCNGG 7 cut(s) 242, 554, 575, 876, 1863, 2996, 3459
Bme18I GGWCC 5 cut(s) 182, 2652, 2842, 2998, 3383
BmeT110I CYCGRG 3 cut(s) 206, 356, 3878
BmgBI CACGTC 1 cut(s) 1765
BmgT120I GGNCC 7 cut(s) 182, 244, 660, 2652, 2842, 2998, 3383
BmiI GGNNCC 8 cut(s) 193, 225, 1318, 1771, 3000, 3287, 3384, 3861
BmrFI CCNGG 7 cut(s) 242, 554, 575, 876, 1863, 2996, 3459
BmrI ACTGGG 4 cut(s) 49, 3493, 3571, 3767
BmuI ACTGGG 4 cut(s) 49, 3493, 3571, 3767
BoxI GACNNNNGTC 1 cut(s) 3388
BpiI GAAGAC 4 cut(s) 2706, 2895, 3123, 3460
BplI GAGNNNNNCTC 2 cut(s) 2780, 2812
BpmI CTGGAG 3 cut(s) 557, 708, 1077
Bpu10I CCTNAGC 1 cut(s) 3312
Bpu1102I GCTNAGC 2 cut(s) 2452, 3743
Bpu14I TTCGAA 1 cut(s) 3072
BpuEI CTTGAG 2 cut(s) 81, 2725
BpuMI CCSGG 1 cut(s) 1863
BsaHI GRCGYC 1 cut(s) 2813
BsaI GGTCTC 2 cut(s) 353, 3353
BsaJI CCNNGG 6 cut(s) 663, 1253, 2233, 2297, 2994, 3751
BsaWI WCCGGW 1 cut(s) 3814
Bsc4I CCNNNNNNNGG 8 cut(s) 40, 165, 787, 1697, 2066, 2303, 3295, 3757
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 6 cut(s) 44, 1815, 3488, 3566, 3672, 3762
Bse3DI GCAATG 3 cut(s) 51, 2575, 3594
BseBI CCWGG 6 cut(s) 242, 554, 575, 876, 2996, 3459
BseDI CCNNGG 6 cut(s) 663, 1253, 2233, 2297, 2994, 3751
BseGI GGATG 9 cut(s) 1020, 1234, 1280, 1753, 2194, 2990, 3430, 3627, 3860
BseLI CCNNNNNNNGG 8 cut(s) 40, 165, 787, 1697, 2066, 2303, 3295, 3757
BseMI GCAATG 3 cut(s) 51, 2575, 3594
BseMII CTCAG 9 cut(s) 317, 938, 991, 1748, 2334, 2529, 2811, 3054, 3303
BseNI ACTGG 6 cut(s) 44, 1815, 3488, 3566, 3672, 3762
BseRI GAGGAG 5 cut(s) 661, 765, 2822, 3000, 3329
BseYI CCCAGC 2 cut(s) 484, 3850
BsgI GTGCAG 3 cut(s) 992, 1148, 1646
Bsh1236I CGCG 2 cut(s) 2241, 3638
Bsh1285I CGRYCG 1 cut(s) 3819
BshFI GGCC 8 cut(s) 76, 245, 372, 661, 1258, 2098, 2645, 2870
BshNI GGYRCC 3 cut(s) 191, 1769, 3859
BsiEI CGRYCG 1 cut(s) 3819
BsiHKAI GWGCWC 3 cut(s) 1192, 1656, 3062
BsiHKCI CYCGRG 3 cut(s) 206, 356, 3878
BsiSI CCGG 3 cut(s) 195, 1863, 3815
BslFI GGGAC 2 cut(s) 3396, 3500
BslI CCNNNNNNNGG 8 cut(s) 40, 165, 787, 1697, 2066, 2303, 3295, 3757
BsmAI GTCTC 9 cut(s) 353, 1522, 1682, 2120, 2795, 2804, 2888, 3270, 3353
BsmBI CGTCTC 2 cut(s) 2120, 2804
BsmFI GGGAC 2 cut(s) 3396, 3500
BsmI GAATGC 4 cut(s) 457, 757, 2268, 2375
BsnI GGCC 8 cut(s) 76, 245, 372, 661, 1258, 2098, 2645, 2870
Bso31I GGTCTC 2 cut(s) 353, 3353
BsoBI CYCGRG 3 cut(s) 206, 356, 3878
Bsp119I TTCGAA 1 cut(s) 3072
Bsp1286I GDGCHC 3 cut(s) 1192, 1656, 3062
Bsp1407I TGTACA 1 cut(s) 1213
Bsp1720I GCTNAGC 2 cut(s) 2452, 3743
Bsp19I CCATGG 1 cut(s) 2297
BspACI CCGC 4 cut(s) 258, 413, 629, 3638
BspANI GGCC 8 cut(s) 76, 245, 372, 661, 1258, 2098, 2645, 2870
BspCNI CTCAG 9 cut(s) 316, 937, 990, 1747, 2333, 2530, 2810, 3055, 3304
BspFNI CGCG 2 cut(s) 2241, 3638
BspHI TCATGA 1 cut(s) 2908
BspLI GGNNCC 8 cut(s) 193, 225, 1318, 1771, 3000, 3287, 3384, 3861
BspMAI CTGCAG 4 cut(s) 899, 1168, 1277, 3891
BspMI ACCTGC 1 cut(s) 3316
BspPI GGATC 9 cut(s) 423, 1236, 1311, 1324, 1349, 1873, 2072, 2314, 2788
BspQI GCTCTTC 2 cut(s) 435, 2211
BspT104I TTCGAA 1 cut(s) 3072
BspT107I GGYRCC 3 cut(s) 191, 1769, 3859
BspTNI GGTCTC 2 cut(s) 353, 3353
BsrDI GCAATG 3 cut(s) 51, 2575, 3594
BsrFI RCCGGY 1 cut(s) 194
BsrGI TGTACA 1 cut(s) 1213
BsrI ACTGG 6 cut(s) 44, 1815, 3488, 3566, 3672, 3762
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 6 cut(s) 663, 1253, 2233, 2297, 2994, 3751
BssNI GRCGYC 1 cut(s) 2813
BssSI CACGAG 1 cut(s) 3354
BssT1I CCWWGG 4 cut(s) 663, 1253, 2233, 2297
Bst2BI CACGAG 1 cut(s) 3354
Bst2UI CCWGG 6 cut(s) 242, 554, 575, 876, 2996, 3459
Bst6I CTCTTC 8 cut(s) 435, 827, 1252, 1448, 2035, 2118, 2211, 3069
BstACI GRCGYC 1 cut(s) 2813
BstAPI GCANNNNNTGC 4 cut(s) 512, 1660, 2272, 3155
BstAUI TGTACA 1 cut(s) 1213
BstBI TTCGAA 1 cut(s) 3072
BstDSI CCRYGG 1 cut(s) 2297
BstF5I GGATG 9 cut(s) 1020, 1234, 1280, 1753, 2194, 2990, 3430, 3627, 3860
BstFNI CGCG 2 cut(s) 2241, 3638
BstHHI GCGC 2 cut(s) 269, 2243
BstMAI GTCTC 9 cut(s) 353, 1522, 1682, 2120, 2795, 2804, 2888, 3270, 3353
BstMCI CGRYCG 1 cut(s) 3819
BstMWI GCNNNNNNNGC 9 cut(s) 155, 257, 266, 512, 1660, 1778, 2272, 2453, 3155
BstNI CCWGG 6 cut(s) 242, 554, 575, 876, 2996, 3459
BstNSI RCATGY 5 cut(s) 533, 1743, 1896, 2826, 2950
BstPAI GACNNNNGTC 1 cut(s) 3388
BstSCI CCNGG 7 cut(s) 240, 552, 573, 874, 1861, 2994, 3457
BstSFI CTRYAG 6 cut(s) 516, 895, 1164, 1273, 2878, 3887
BstUI CGCG 2 cut(s) 2241, 3638
BstV2I GAAGAC 4 cut(s) 2706, 2895, 3123, 3460
BstX2I RGATCY 5 cut(s) 235, 899, 1241, 1316, 1354
BstYI RGATCY 5 cut(s) 235, 899, 1241, 1316, 1354
BsuRI GGCC 8 cut(s) 76, 245, 372, 661, 1258, 2098, 2645, 2870
BtgI CCRYGG 1 cut(s) 2297
BtrI CACGTC 1 cut(s) 1765
BtsCI GGATG 9 cut(s) 1020, 1234, 1280, 1753, 2194, 2990, 3430, 3627, 3860
BtsI GCAGTG 4 cut(s) 692, 1073, 1161, 3884
BveI ACCTGC 1 cut(s) 3316
CaiI CAGNNNCTG 1 cut(s) 3155
CciI TCATGA 1 cut(s) 2908
CfoI GCGC 2 cut(s) 269, 2243
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 7 cut(s) 182, 244, 660, 2652, 2842, 2998, 3383
CseI GACGC 3 cut(s) 1585, 2295, 2821
Csp6I GTAC 9 cut(s) 804, 1214, 1362, 1570, 1671, 2057, 3305, 3845, 3860
CviQI GTAC 9 cut(s) 804, 1214, 1362, 1570, 1671, 2057, 3305, 3845, 3860
DraIII CACNNNGTG 3 cut(s) 1104, 2507, 2767
EaeI YGGCCR 3 cut(s) 370, 2096, 2643
Eam1104I CTCTTC 8 cut(s) 435, 827, 1252, 1448, 2035, 2118, 2211, 3069
EarI CTCTTC 8 cut(s) 435, 827, 1252, 1448, 2035, 2118, 2211, 3069
Eco130I CCWWGG 4 cut(s) 663, 1253, 2233, 2297
Eco147I AGGCCT 1 cut(s) 76
Eco31I GGTCTC 2 cut(s) 353, 3353
Eco47I GGWCC 5 cut(s) 182, 2652, 2842, 2998, 3383
Eco57I CTGAAG 4 cut(s) 842, 1331, 2426, 3851
Eco88I CYCGRG 3 cut(s) 206, 356, 3878
EcoO109I RGGNCCY 1 cut(s) 2998
EcoRI GAATTC 1 cut(s) 3653
EcoRII CCWGG 6 cut(s) 240, 552, 573, 874, 2994, 3457
EcoT14I CCWWGG 4 cut(s) 663, 1253, 2233, 2297
EcoT22I ATGCAT 7 cut(s) 294, 1431, 1745, 2268, 2431, 2948, 3378
ErhI CCWWGG 4 cut(s) 663, 1253, 2233, 2297
Esp3I CGTCTC 2 cut(s) 2120, 2804
FalI AAGNNNNNCTT 2 cut(s) 2100, 2132
FaqI GGGAC 2 cut(s) 3396, 3500
FauNDI CATATG 3 cut(s) 1405, 2898, 2942
FbaI TGATCA 2 cut(s) 1927, 3196
FblI GTMKAC 1 cut(s) 2877
FokI GGATG 9 cut(s) 1027, 1241, 1267, 1760, 2201, 2977, 3437, 3634, 3867
GlaI GCGC 2 cut(s) 268, 2242
GsaI CCCAGC 2 cut(s) 488, 3854
GsuI CTGGAG 3 cut(s) 557, 708, 1077
HaeIII GGCC 8 cut(s) 76, 245, 372, 661, 1258, 2098, 2645, 2870
HapII CCGG 3 cut(s) 195, 1863, 3815
HgaI GACGC 3 cut(s) 1585, 2295, 2821
HhaI GCGC 2 cut(s) 269, 2243
Hin1I GRCGYC 1 cut(s) 2813
Hin6I GCGC 2 cut(s) 267, 2241
HinP1I GCGC 2 cut(s) 267, 2241
HincII GTYRAC 2 cut(s) 2113, 2563
HindII GTYRAC 2 cut(s) 2113, 2563
HindIII AAGCTT 4 cut(s) 2627, 3182, 3400, 3745
HpaII CCGG 3 cut(s) 195, 1863, 3815
HphI GGTGA 4 cut(s) 317, 1242, 1244, 1672
Hpy99I CGWCG 1 cut(s) 2097
HpyCH4IV ACGT 4 cut(s) 1764, 2092, 2395, 3835
HpyF10VI GCNNNNNNNGC 9 cut(s) 155, 257, 266, 512, 1660, 1778, 2272, 2453, 3155
HpySE526I ACGT 4 cut(s) 1764, 2092, 2395, 3835
Hsp92I GRCGYC 1 cut(s) 2813
HspAI GCGC 2 cut(s) 267, 2241
KpnI GGTACC 1 cut(s) 3863
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
Ksp22I TGATCA 2 cut(s) 1927, 3196
LguI GCTCTTC 2 cut(s) 435, 2211
LmnI GCTCC 7 cut(s) 61, 176, 576, 1612, 2987, 3316, 3684
MaeII ACGT 4 cut(s) 1764, 2092, 2395, 3835
MfeI CAATTG 1 cut(s) 3232
MflI RGATCY 5 cut(s) 235, 899, 1241, 1316, 1354
MhlI GDGCHC 3 cut(s) 1192, 1656, 3062
MlsI TGGCCA 2 cut(s) 372, 2645
MluNI TGGCCA 2 cut(s) 372, 2645
MlyI GAGTC 9 cut(s) 914, 1259, 1562, 2240, 2312, 2335, 3169, 3398, 3890
MmeI TCCRAC 6 cut(s) 83, 1206, 1293, 2308, 3057, 3811
Mox20I TGGCCA 2 cut(s) 372, 2645
Mph1103I ATGCAT 7 cut(s) 294, 1431, 1745, 2268, 2431, 2948, 3378
MroNI GCCGGC 1 cut(s) 194
MroXI GAANNNNTTC 3 cut(s) 991, 1035, 1120
MscI TGGCCA 2 cut(s) 372, 2645
MseI TTAA 7 cut(s) 854, 990, 1934, 1949, 3398, 3494, 3660
MslI CAYNNNNRTG 6 cut(s) 1013, 1206, 1763, 2683, 2945, 3211
Msp20I TGGCCA 2 cut(s) 372, 2645
MspA1I CMGCKG 3 cut(s) 272, 634, 1694
MspI CCGG 3 cut(s) 195, 1863, 3815
MspR9I CCNGG 7 cut(s) 242, 554, 575, 876, 1863, 2996, 3459
MunI CAATTG 1 cut(s) 3232
Mva1269I GAATGC 4 cut(s) 457, 757, 2268, 2375
MvaI CCWGG 6 cut(s) 242, 554, 575, 876, 2996, 3459
MvnI CGCG 2 cut(s) 2241, 3638
MwoI GCNNNNNNNGC 9 cut(s) 155, 257, 266, 512, 1660, 1778, 2272, 2453, 3155
NaeI GCCGGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 1863
NcoI CCATGG 1 cut(s) 2297
NdeI CATATG 3 cut(s) 1405, 2898, 2942
NgoMIV GCCGGC 1 cut(s) 194
NlaIV GGNNCC 8 cut(s) 193, 225, 1318, 1771, 3000, 3287, 3384, 3861
NmuCI GTSAC 7 cut(s) 1071, 1199, 1232, 1504, 1622, 1756, 3882
NsiI ATGCAT 7 cut(s) 294, 1431, 1745, 2268, 2431, 2948, 3378
NspI RCATGY 5 cut(s) 533, 1743, 1896, 2826, 2950
NspV TTCGAA 1 cut(s) 3072
OliI CACNNNNGTG 1 cut(s) 1763
PaeI GCATGC 2 cut(s) 1896, 2950
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 2908
PceI AGGCCT 1 cut(s) 76
PciI ACATGT 1 cut(s) 2822
PciSI GCTCTTC 2 cut(s) 435, 2211
PcsI WCGNNNNNNNCGW 1 cut(s) 2098
PctI GAATGC 4 cut(s) 457, 757, 2268, 2375
PdiI GCCGGC 1 cut(s) 196
PdmI GAANNNNTTC 3 cut(s) 991, 1035, 1120
PflFI GACNNNGTC 1 cut(s) 3759
PflMI CCANNNNNTGG 1 cut(s) 1697
PfoI TCCNGGA 3 cut(s) 552, 573, 1861
PleI GAGTC 9 cut(s) 914, 1259, 1561, 2240, 2312, 2335, 3168, 3397, 3889
PpsI GAGTC 9 cut(s) 914, 1259, 1561, 2240, 2312, 2335, 3168, 3397, 3889
PpuMI RGGWCCY 1 cut(s) 2998
PscI ACATGT 1 cut(s) 2822
PshAI GACNNNNGTC 1 cut(s) 3388
PshBI ATTAAT 1 cut(s) 990
PsiI TTATAA 1 cut(s) 1335
Psp5II RGGWCCY 1 cut(s) 2998
Psp6I CCWGG 6 cut(s) 240, 552, 573, 874, 2994, 3457
PspFI CCCAGC 2 cut(s) 484, 3850
PspGI CCWGG 6 cut(s) 240, 552, 573, 874, 2994, 3457
PspN4I GGNNCC 8 cut(s) 193, 225, 1318, 1771, 3000, 3287, 3384, 3861
PspPI GGNCC 7 cut(s) 182, 244, 660, 2652, 2842, 2998, 3383
PspPPI RGGWCCY 1 cut(s) 2998
PstI CTGCAG 4 cut(s) 899, 1168, 1277, 3891
PstNI CAGNNNCTG 1 cut(s) 3155
PsuI RGATCY 5 cut(s) 235, 899, 1241, 1316, 1354
PsyI GACNNNGTC 1 cut(s) 3759
PvuII CAGCTG 3 cut(s) 272, 634, 1694
RsaI GTAC 9 cut(s) 805, 1215, 1363, 1571, 1672, 2058, 3306, 3846, 3861
RsaNI GTAC 9 cut(s) 804, 1214, 1362, 1570, 1671, 2057, 3305, 3845, 3860
RseI CAYNNNNRTG 6 cut(s) 1013, 1206, 1763, 2683, 2945, 3211
SapI GCTCTTC 2 cut(s) 435, 2211
SaqAI TTAA 7 cut(s) 854, 990, 1934, 1949, 3398, 3494, 3660
Sau96I GGNCC 7 cut(s) 182, 244, 660, 2652, 2842, 2998, 3383
SchI GAGTC 9 cut(s) 914, 1259, 1562, 2240, 2312, 2335, 3169, 3398, 3890
ScrFI CCNGG 7 cut(s) 242, 554, 575, 876, 1863, 2996, 3459
SduI GDGCHC 3 cut(s) 1192, 1656, 3062
SfcI CTRYAG 6 cut(s) 516, 895, 1164, 1273, 2878, 3887
Sfr274I CTCGAG 1 cut(s) 206
SfuI TTCGAA 1 cut(s) 3072
SinI GGWCC 5 cut(s) 182, 2652, 2842, 2998, 3383
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 6 cut(s) 1013, 1206, 1763, 2683, 2945, 3211
SmlI CTYRAG 3 cut(s) 96, 206, 2704
SmoI CTYRAG 3 cut(s) 96, 206, 2704
SpeI ACTAGT 1 cut(s) 2588
SphI GCATGC 2 cut(s) 1896, 2950
SseBI AGGCCT 1 cut(s) 76
SsiI CCGC 4 cut(s) 258, 413, 629, 3638
SspI AATATT 2 cut(s) 1331, 3097
StuI AGGCCT 1 cut(s) 76
StyD4I CCNGG 7 cut(s) 240, 552, 573, 874, 1861, 2994, 3457
StyI CCWWGG 4 cut(s) 663, 1253, 2233, 2297
TaiI ACGT 4 cut(s) 1767, 2095, 2398, 3838
TaqI TCGA 4 cut(s) 207, 215, 3072, 3819
TatI WGTACW 1 cut(s) 1213
TauI GCSGC 1 cut(s) 260
Tru1I TTAA 7 cut(s) 854, 990, 1934, 1949, 3398, 3494, 3660
Tru9I TTAA 7 cut(s) 854, 990, 1934, 1949, 3398, 3494, 3660
TseFI GTSAC 7 cut(s) 1071, 1199, 1232, 1504, 1622, 1756, 3882
Tsp45I GTSAC 7 cut(s) 1071, 1199, 1232, 1504, 1622, 1756, 3882
TspGWI ACGGA 5 cut(s) 1114, 1900, 2144, 2201, 2509
Tth111I GACNNNGTC 1 cut(s) 3759
Van91I CCANNNNNTGG 1 cut(s) 1697
VpaK11BI GGWCC 5 cut(s) 182, 2652, 2842, 2998, 3383
VspI ATTAAT 1 cut(s) 990
XapI RAATTY 8 cut(s) 116, 137, 346, 1369, 1902, 1967, 2737, 3653
XbaI TCTAGA 1 cut(s) 3901
XceI RCATGY 5 cut(s) 533, 1743, 1896, 2826, 2950
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 2877
XmnI GAANNNNTTC 3 cut(s) 991, 1035, 1120
Zsp2I ATGCAT 7 cut(s) 294, 1431, 1745, 2268, 2431, 2948, 3378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.